Homology VHK313 vs DNA
Query= VHK313 (VHK313Q) /CSM/VH/VHK3-A/VHK313Q.Seq.d/
(1194 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(L35321) Dictyostelium discoideum class VII unconventional m... 585 0.0 7
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 585 0.0 7
(BJ442838) Dictyostelium discoideum cDNA clone:ddv51j03, 3' ... 353 0.0 3
(BJ424013) Dictyostelium discoideum cDNA clone:ddv51j03, 5' ... 585 0.0 3
(AU061886) Dictyostelium discoideum slug cDNA, clone SLG482. 309 e-112 2
(U83089) Dictyostelium discoideum MyoI (myoI) mRNA, partial ... 327 4e-92 3
(BJ419536) Dictyostelium discoideum cDNA clone:ddv36l12, 5' ... 339 1e-88 2
(BJ422694) Dictyostelium discoideum cDNA clone:ddv46b22, 5' ... 180 2e-51 2
(AU039812) Dictyostelium discoideum slug cDNA, clone SLG482. 119 3e-26 2
(CC817914) 1O0004A03F Oxytricha plasmid UUGC1O library Sterk... 48 3e-10 4
(BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve... 50 3e-09 4
(AZ583039) 1M0376E14R Mouse 10kb plasmid UUGC1M library Mus ... 48 1e-08 4
(BZ241111) CH230-324L22.TV CHORI-230 Segment 2 Rattus norveg... 48 2e-08 4
(AX647437) Sequence 1629 from Patent EP1270724. 46 3e-08 4
(DW046515) CLLX13227.b1_F19.ab1 CLL(XYZ) lettuce saligna Lac... 48 4e-08 4
(DW046933) CLLX13616.b1_P19.ab1 CLL(XYZ) lettuce saligna Lac... 48 5e-08 4
(ET061261) MUGQ_CH252P357J11Sp6_CP670_040 CHORI-252 Vervet M... 42 1e-07 5
(CE480293) tigr-gss-dog-17000364769283 Dog Library Canis lup... 42 1e-07 4
(DH676955) Rattus norvegicus DNA, BAC clone: RNB1-228M22, 3'... 48 2e-07 3
(CU570986) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 70 2e-07 1
(DY925978) CHAY9495.b1_M22.ab1 CHA(XYZ) common wild sunflowe... 42 2e-07 3
(DY929347) CHAZ4419.b1_E02.ab1 CHA(XYZ) common wild sunflowe... 42 3e-07 3
(AL184136) Tetraodon nigroviridis genome survey sequence T7 ... 48 3e-07 3
(DY920512) CHAY3894.b1_K13.ab1 CHA(XYZ) common wild sunflowe... 42 3e-07 3
(DY914884) CHAY10775.b1_M05.ab1 CHA(XYZ) common wild sunflow... 42 4e-07 3
(DH777501) Rattus norvegicus DNA, BAC clone: RNB1-364J13, 5'... 48 4e-07 3
(DH601795) Rattus norvegicus DNA, BAC clone: RNB1-127P07, 5'... 42 4e-07 4
(CA319780) UI-M-FW0-cca-b-02-0-UI.r1 NIH_BMAP_FW0 Mus muscul... 48 4e-07 4
(DH562830) Rattus norvegicus DNA, BAC clone: RNB1-075H17, 5'... 42 5e-07 4
(DW046635) CLLX13338.b1_C24.ab1 CLL(XYZ) lettuce saligna Lac... 48 5e-07 4
(EL513628) CHUY396.b1_G03.ab1 CHU(XYZ) puzzle sunflower Heli... 42 6e-07 4
(EL513966) CHUY737.b1_B18.ab1 CHU(XYZ) puzzle sunflower Heli... 42 6e-07 4
(DH772441) Rattus norvegicus DNA, BAC clone: RNB1-357N11, 5'... 48 6e-07 4
(BH336507) CH230-169E2.TJ CHORI-230 Segment 1 Rattus norvegi... 48 7e-07 3
(DH819890) Rattus norvegicus DNA, BAC clone: RNB1-423F22, 5'... 48 7e-07 3
(AB149729) Homo sapiens DNA, STS on chromosome 12, D12S0713i... 32 7e-07 5
(DJ466672) Method for analysing genome using microsatellite ... 32 7e-07 5
(AB018490) Homo sapiens DNA, trinucleotide repeats region. 46 8e-07 4
(CQ342167) Sequence 16261 from Patent WO0157275. 42 9e-07 4
(CQ304933) Sequence 16038 from Patent WO0186003. 42 9e-07 4
(CQ267909) Sequence 16170 from Patent WO0157277. 42 9e-07 4
(CQ229773) Sequence 16612 from Patent WO0157273. 42 9e-07 4
(CQ206364) Sequence 8641 from Patent WO0157271. 42 9e-07 4
(CQ181991) Sequence 13387 from Patent WO0157274. 42 9e-07 4
(CQ146551) Sequence 16573 from Patent WO0157276. 42 9e-07 4
(CQ107909) Sequence 16768 from Patent WO0157272. 42 9e-07 4
(CQ076913) Sequence 12713 from Patent WO0157278. 42 9e-07 4
(CQ057625) Sequence 8445 from Patent WO0157270. 42 9e-07 4
(CQ341185) Sequence 15279 from Patent WO0157275. 42 1e-06 4
(CQ303869) Sequence 14974 from Patent WO0186003. 42 1e-06 4
(CQ266896) Sequence 15157 from Patent WO0157277. 42 1e-06 4
(CQ228754) Sequence 15593 from Patent WO0157273. 42 1e-06 4
(CQ205355) Sequence 7632 from Patent WO0157271. 42 1e-06 4
(CQ180991) Sequence 12387 from Patent WO0157274. 42 1e-06 4
(CQ145546) Sequence 15568 from Patent WO0157276. 42 1e-06 4
(CQ106891) Sequence 15750 from Patent WO0157272. 42 1e-06 4
(CQ075914) Sequence 11714 from Patent WO0157278. 42 1e-06 4
(CQ056637) Sequence 7457 from Patent WO0157270. 42 1e-06 4
(CB791427) AMGNNUC:YRHD1-00002-C3-A rat hypothalamus (10527)... 52 1e-06 3
(CQ329411) Sequence 3505 from Patent WO0157275. 42 1e-06 4
(CQ292390) Sequence 3495 from Patent WO0186003. 42 1e-06 4
(CQ255305) Sequence 3566 from Patent WO0157277. 42 1e-06 4
(CQ216736) Sequence 3575 from Patent WO0157273. 42 1e-06 4
(CQ201223) Sequence 3500 from Patent WO0157271. 42 1e-06 4
(CQ172075) Sequence 3471 from Patent WO0157274. 42 1e-06 4
(CQ133505) Sequence 3527 from Patent WO0157276. 42 1e-06 4
(CQ094745) Sequence 3604 from Patent WO0157272. 42 1e-06 4
(CQ067689) Sequence 3489 from Patent WO0157278. 42 1e-06 4
(CQ052617) Sequence 3437 from Patent WO0157270. 42 1e-06 4
(BZ115869) CH230-255D7.TVB CHORI-230 Segment 2 Rattus norveg... 38 1e-06 4
(AC177308) Strongylocentrotus purpuratus clone R3-1033B15, W... 48 1e-06 5
(AZ840062) 2M0136M19F Mouse 10kb plasmid UUGC1M library Mus ... 40 2e-06 4
(CQ328471) Sequence 2565 from Patent WO0157275. 42 2e-06 4
(CQ291368) Sequence 2473 from Patent WO0186003. 42 2e-06 4
(CQ254334) Sequence 2595 from Patent WO0157277. 42 2e-06 4
(CQ215756) Sequence 2595 from Patent WO0157273. 42 2e-06 4
(CQ200252) Sequence 2529 from Patent WO0157271. 42 2e-06 4
(CQ171117) Sequence 2513 from Patent WO0157274. 42 2e-06 4
(CQ132545) Sequence 2567 from Patent WO0157276. 42 2e-06 4
(CQ093768) Sequence 2627 from Patent WO0157272. 42 2e-06 4
(CQ066726) Sequence 2526 from Patent WO0157278. 42 2e-06 4
(CQ051669) Sequence 2489 from Patent WO0157270. 42 2e-06 4
(BZ243402) CH230-419C24.TJ CHORI-230 Segment 2 Rattus norveg... 40 3e-06 4
(BZ254273) CH230-402H7.TV CHORI-230 Segment 2 Rattus norvegi... 48 3e-06 3
(AC180878) Strongylocentrotus purpuratus clone R3-3067P10, W... 48 3e-06 6
(DH521845) Rattus norvegicus DNA, BAC clone: RNB1-019I20, 5'... 42 3e-06 4
(BZ215927) CH230-250M23.TV CHORI-230 Segment 2 Rattus norveg... 48 3e-06 3
(DH778948) Rattus norvegicus DNA, BAC clone: RNB1-366I19, 5'... 48 3e-06 3
(DH636692) Rattus norvegicus DNA, BAC clone: RNB1-174L24, 3'... 36 3e-06 5
(AA776664) ae79h06.s1 Stratagene schizo brain S11 Homo sapie... 40 4e-06 3
(DE215482) Trifolium pratense DNA, clone:RCG04183. 36 4e-06 4
(AC181652) Strongylocentrotus purpuratus clone R3-10K16, WOR... 44 5e-06 6
(AC152983) Mus musculus 10 BAC RP23-17L11 (Roswell Park Canc... 48 6e-06 4
(BZ223258) CH230-496O4.TVB CHORI-230 Segment 2 Rattus norveg... 44 6e-06 3
(AQ927406) RPCI-23-261L19.TV RPCI-23 Mus musculus genomic cl... 42 6e-06 3
(AC181850) Strongylocentrotus purpuratus clone R3-1022C20, W... 44 7e-06 7
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 7e-06 12
(AQ759124) HS_2249_B2_H02_T7C CIT Approved Human Genomic Spe... 42 7e-06 3
(BZ144309) CH230-462F7.TJ CHORI-230 Segment 2 Rattus norvegi... 48 7e-06 3
(EL513533) CHUX637.b1_I16.ab1 CHU(XYZ) puzzle sunflower Heli... 42 7e-06 3
>(L35321) Dictyostelium discoideum class VII unconventional myosin
(myoI) gene, complete cds.
Length = 7597
Score = 585 bits (295), Expect(7) = 0.0
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 taaaatttcaatcactgatttacttcaaggtttaaaacaaaccgttagatccgttactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 taaaatttcaatcactgatttacttcaaggtttaaaacaaaccgttagatccgttactaa 3219
Query: 61 atttgaagttgatgaatctaaatttgaattaccaccaggtattgaaaatgtacttaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 atttgaagttgatgaatctaaatttgaattaccaccaggtattgaaaatgtacttaaaag 3279
Query: 121 agcaccaggtattaaaagacaagcttcttctttcttaccaggtcaaccaatcccagatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 agcaccaggtattaaaagacaagcttcttctttcttaccaggtcaaccaatcccagatgt 3339
Query: 181 ttattcttcaccacaatatccagttgatgaagctgatgatgatgatagtaataataatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 ttattcttcaccacaatatccagttgatgaagctgatgatgatgatagtaataataatta 3399
Query: 241 cataaatagtaataatggtgatttaccacttccaacatcacaatcctccgatttc 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3400 cataaatagtaataatggtgatttaccacttccaacatcacaatcctccgatttc 3454
Score = 345 bits (174), Expect(7) = 0.0
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 758 tcagttatgggttcgaccaaaccaattgaaattccatcattaggtattccaccaccacca 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579 tcagttatgggttcgaccaaaccaattgaaattccatcattaggtattccaccaccacca 5638
Query: 818 ccatcatcatcaaattcatcagtaccaaattcaccaattggttcaccaatgatgggtatt 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5639 ccatcatcatcaaattcatcagtaccaaattcaccaattggttcaccaatgatgggtatt 5698
Query: 878 ccaccaccaccaccaactatttcagttcattcattgtcaaacagtggtaatagt 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5699 ccaccaccaccaccaactatttcagttcattcattgtcaaacagtggtaatagt 5752
Score = 327 bits (165), Expect(7) = 0.0
Identities = 169/171 (98%)
Strand = Plus / Plus
Query: 1008 actttagatcatcattaagagtatcaatgcttaatacatcaaatgatggtggtgataata 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5829 actttagatcatcattaagagtatcaatgcttaatacatcaaatgatggtggtgataata 5888
Query: 1068 gttctgatgatccatcaaagagattaacagtttcgccagccattggtaccgatagtcaat 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5889 gttctgatgatccatcaaagagattaacagtttcgccagccattggtaccgatagtcaat 5948
Query: 1128 nggcanaatgggcatcaactcgtttccgttcattcaagagagcatcaacat 1178
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5949 tggcacaatgggcatcaactcgtttccgttcattcaagagagcatcaacat 5999
Score = 309 bits (156), Expect(7) = 0.0
Identities = 158/159 (99%)
Strand = Plus / Plus
Query: 555 aaggttcattcccagttgatcatgttgaaattttattatntgatgtaccaccaccacaac 614
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5376 aaggttcattcccagttgatcatgttgaaattttattatctgatgtaccaccaccacaac 5435
Query: 615 cagttcatccagttgctactttatcacccccaatgtcaccaactattccaaacattacaa 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5436 cagttcatccagttgctactttatcacccccaatgtcaccaactattccaaacattacaa 5495
Query: 675 atactccaccaccaccaccatcaattagtgattcaatgt 713
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5496 atactccaccaccaccaccatcaattagtgattcaatgt 5534
Score = 180 bits (91), Expect(7) = 0.0
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 452 tcaacatcagattcaacatcaccatcagcaacagcaacaggtaataatacaccaaattca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3611 tcaacatcagattcaacatcaccatcagcaacagcaacaggtaataatacaccaaattca 3670
Query: 512 tcatcggcatcagcaagtcaatcaactaatc 542
|||||||||||||||||||||||||||||||
Sbjct: 3671 tcatcggcatcagcaagtcaatcaactaatc 3701
Score = 133 bits (67), Expect(7) = 0.0
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 368 ggtggtacatattcattaccaccaatgccagtatttgatttcggtatgattgatccaatt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3527 ggtggtacatattcattaccaccaatgccagtatttgatttcggtatgattgatccaatt 3586
Query: 428 ttaggtg 434
|||||||
Sbjct: 3587 ttaggtg 3593
Score = 30.2 bits (15), Expect(7) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1180 aatcaacaacaagca 1194
|||||||||||||||
Sbjct: 6002 aatcaacaacaagca 6016
Score = 42.1 bits (21), Expect(4) = 1e-06
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 872 ggtattccaccaccaccacca 892
|||||||||||||||||||||
Sbjct: 5621 ggtattccaccaccaccacca 5641
Score = 38.2 bits (19), Expect(4) = 1e-06
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 680 ccaccaccaccaccatcaa 698
|||||||||||||||||||
Sbjct: 3596 ccaccaccaccaccatcaa 3614
Score = 38.2 bits (19), Expect(4) = 1e-06
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 805 tccaccaccaccaccatca 823
|||||||||||||||||||
Sbjct: 5500 tccaccaccaccaccatca 5518
Score = 26.3 bits (13), Expect(4) = 1e-06
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 600 taccaccaccacaacca 616
|||||||||||| ||||
Sbjct: 3498 taccaccaccaccacca 3514
Score = 44.1 bits (22), Expect(3) = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 806 ccaccaccaccaccatcatcatcaaattca 835
|||||||||||||||||| ||||| |||||
Sbjct: 3596 ccaccaccaccaccatcaacatcagattca 3625
Score = 36.2 bits (18), Expect(3) = 3e-04
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 680 ccaccaccaccaccatca 697
||||||||||||||||||
Sbjct: 3500 ccaccaccaccaccatca 3517
Score = 32.2 bits (16), Expect(3) = 3e-04
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 877 tccaccaccaccacca 892
||||||||||||||||
Sbjct: 5500 tccaccaccaccacca 5515
Score = 48.1 bits (24), Expect(3) = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 806 ccaccaccaccaccatcatcatca 829
||||||||||||||||||||||||
Sbjct: 3500 ccaccaccaccaccatcatcatca 3523
Score = 32.2 bits (16), Expect(3) = 0.001
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 682 accaccaccaccatca 697
||||||||||||||||
Sbjct: 3460 accaccaccaccatca 3475
Score = 30.2 bits (15), Expect(3) = 0.001
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 878 ccaccaccaccacca 892
|||||||||||||||
Sbjct: 3596 ccaccaccaccacca 3610
Score = 42.1 bits (21), Expect(3) = 0.013
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 800 ggtattccaccaccaccacca 820
|||||||||||||||||||||
Sbjct: 5693 ggtattccaccaccaccacca 5713
Score = 38.2 bits (19), Expect(3) = 0.013
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 679 tccaccaccaccaccatca 697
|||||||||||||||||||
Sbjct: 5626 tccaccaccaccaccatca 5644
Score = 26.3 bits (13), Expect(3) = 0.013
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 601 accaccaccacaa 613
|||||||||||||
Sbjct: 5536 accaccaccacaa 5548
Score = 42.1 bits (21), Expect(2) = 6.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 808 accaccaccaccatcatcatc 828
|||||||||||||||||||||
Sbjct: 3460 accaccaccaccatcatcatc 3480
Score = 30.2 bits (15), Expect(2) = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 878 ccaccaccaccacca 892
|||||||||||||||
Sbjct: 3500 ccaccaccaccacca 3514
Score = 40.1 bits (20), Expect(3) = 7.0
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 806 ccaccaccaccaccatcatcatca 829
|||||||||||| |||||||||||
Sbjct: 3503 ccaccaccaccatcatcatcatca 3526
Score = 28.2 bits (14), Expect(3) = 7.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 680 ccaccaccaccaccatca 697
|||||||||||| |||||
Sbjct: 3461 ccaccaccaccatcatca 3478
Score = 28.2 bits (14), Expect(3) = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 879 caccaccaccacca 892
||||||||||||||
Sbjct: 3594 caccaccaccacca 3607
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,088,586,648
Number of extensions: 77234399
Number of successful extensions: 10053549
Number of sequences better than 10.0: 14006
Length of query: 1194
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1170
Effective length of database: 97,308,875,965
Effective search space: 113851384879050
Effective search space used: 113851384879050
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home