Homology VHJ647 vs Protein
Query= VHJ647 (VHJ647Q) /CSM/VH/VHJ6-B/VHJ647Q.Seq.d/
(1373 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF421549_1(AF421549|pid:none) Gallus gallus CDH1-D mRNA, partial... 69 6e-10
BT099075_1(BT099075|pid:none) Soybean clone JCVI-FLGm-16H4 unkno... 59 1e-08
JF284509_1(JF284509|pid:none) Cherax quadricarinatus clone v1-18... 64 3e-08
AM462492_6(AM462492|pid:none) Vitis vinifera contig VV78X177628.... 60 2e-07
EU979522_1(EU979522|pid:none) Ornithoctonus huwena clone HWEco7 ... 59 9e-07
FN358262_1(FN358262|pid:none) Schistosoma mansoni genome sequenc... 49 2e-06
FN364425_1(FN364425|pid:none) Schistosoma mansoni genome sequenc... 48 5e-06
FP929128_287(FP929128|pid:none) Leptosphaeria maculans JN3 lm_Su... 55 7e-06
CP003008_93(CP003008|pid:none) Myceliophthora thermophila ATCC 4... 47 1e-05
FN365438_1(FN365438|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN364608_1(FN364608|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN364380_1(FN364380|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN361659_1(FN361659|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN362765_1(FN362765|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN363218_1(FN363218|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN363801_1(FN363801|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN365059_1(FN365059|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN367568_1(FN367568|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN365673_1(FN365673|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN363136_1(FN363136|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN357971_1(FN357971|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN364052_1(FN364052|pid:none) Schistosoma mansoni genome sequenc... 47 1e-05
FN364417_1(FN364417|pid:none) Schistosoma mansoni genome sequenc... 45 2e-05
FN358549_1(FN358549|pid:none) Schistosoma mansoni genome sequenc... 45 2e-05
FN364126_1(FN364126|pid:none) Schistosoma mansoni genome sequenc... 47 3e-05
JN216970_1(JN216970|pid:none) Epinephelus bruneus clone JKJRRC00... 53 4e-05
FN359335_1(FN359335|pid:none) Schistosoma mansoni genome sequenc... 45 4e-05
AY914930_1(AY914930|pid:none) Schistosoma japonicum SJCHGC01014 ... 53 5e-05
FN361429_1(FN361429|pid:none) Schistosoma mansoni genome sequenc... 44 5e-05
EU955514_1(EU955514|pid:none) Zea mays clone 1535262 hypothetica... 50 2e-04
FN359312_1(FN359312|pid:none) Schistosoma mansoni genome sequenc... 44 3e-04
AL844509_687(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 50 4e-04
FN366187_1(FN366187|pid:none) Schistosoma mansoni genome sequenc... 47 4e-04
FN373437_1(FN373437|pid:none) Schistosoma mansoni genome sequenc... 44 4e-04
FP929128_285(FP929128|pid:none) Leptosphaeria maculans JN3 lm_Su... 49 7e-04
FN364050_1(FN364050|pid:none) Schistosoma mansoni genome sequenc... 38 0.003
FN358558_1(FN358558|pid:none) Schistosoma mansoni genome sequenc... 47 0.003
FN365648_1(FN365648|pid:none) Schistosoma mansoni genome sequenc... 47 0.003
HQ206640_1(HQ206640|pid:none) Perca flavescens clone Pf_8031 CHK... 45 0.010
FQ311869_2(FQ311869|pid:none) Azospirillum lipoferum 4B plasmid ... 42 0.064
AM085146_9(AM085146|pid:none) Magnetospirillum gryphiswaldense m... 42 0.084
FN543107_181(FN543107|pid:none) Curvibacter putative symbiont of... 39 0.54
CP000890_242(CP000890|pid:none) Coxiella burnetii RSA 331, compl... 39 0.54
CP000930_2283(CP000930|pid:none) Heliobacterium modesticaldum Ic... 39 0.93
FM179322_2504(FM179322|pid:none) Lactobacillus rhamnosus GG whol... 37 2.1
FM179322_816(FM179322|pid:none) Lactobacillus rhamnosus GG whole... 37 2.1
AP009386_1894(AP009386|pid:none) Burkholderia multivorans ATCC 1... 37 3.5
B72581(B72581)hypothetical protein APES063 - Aeropyrum pernix (s... 36 6.0
JN216989_1(JN216989|pid:none) Epinephelus bruneus clone JKJRRC00... 36 6.0
AY228468_281(AY228468|pid:none) Pinus koraiensis chloroplast, co... 36 6.0
DQ995340_1(DQ995340|pid:none) Saussurea involucrata antifreeze p... 35 7.8
>AF421549_1(AF421549|pid:none) Gallus gallus CDH1-D mRNA, partial cds.
Length = 451
Score = 68.9 bits (167), Expect = 6e-10
Identities = 54/133 (40%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Frame = -3
Query: 1260 NDPSAGSPTDTXXXXXXXLNNEI*IT---FNLYQCCHR*NDPLTLPYHSIGRSDGRCVQR 1090
NDPSAGSPT+T L++++ + DP T H IG SDGRCVQR
Sbjct: 250 NDPSAGSPTETLLRLLLPLDSQVRPSSRRSGRAVADPAGADPRTSLNHPIGSSDGRCVQR 309
Query: 1089 AGTYSA*GNDLRLQGIPRL*SIITKIKPSYVGNSNDYPILPDQEPFCFLH-----CSARA 925
AGTYS D L GIPR II P + S YP LP + CS R
Sbjct: 310 AGTYSTRAYDPHLLGIPRSWGIIAIPDPHHEWGSTGYPRLPAKGTHKLSQSVQRACSPRT 369
Query: 924 AQGI*GHHRPVIA 886
+Q G RPVIA
Sbjct: 370 SQ---GRDRPVIA 379
Score = 45.8 bits (107), Expect = 0.006
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = -1
Query: 716 VSSVIGIDQTNRSTN*ERPCTTTYRIMKD 630
VS VIGI+QTNRSTN ERPCTTT+ I K+
Sbjct: 409 VSFVIGINQTNRSTNKERPCTTTHGIEKE 437
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 4,074,770,616
Number of extensions: 88572210
Number of successful extensions: 157109
Number of sequences better than 10.0: 51
Number of HSP's gapped: 157095
Number of HSP's successfully gapped: 82
Length of query: 457
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 322
Effective length of database: 1,010,438,449
Effective search space: 325361180578
Effective search space used: 325361180578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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