Homology VHJ647 vs DNA
Query= VHJ647 (VHJ647Q) /CSM/VH/VHJ6-B/VHJ647Q.Seq.d/
(1373 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ442608) Dictyostelium discoideum cDNA clone:ddv50m12, 3' ... 1388 0.0 2
(AY171066) Dictyostelium discoideum extrachromosomal palindr... 1134 0.0 1
(AM168071) Dictyostelium discoideum 18S rRNA gene, isolate NC4. 1134 0.0 1
(AM168040) Dictyostelium discoideum 18S rRNA gene, isolate 9... 1134 0.0 1
(BJ423790) Dictyostelium discoideum cDNA clone:ddv50m12, 5' ... 1134 0.0 1
(BJ421651) Dictyostelium discoideum cDNA clone:ddv43k10, 5' ... 1134 0.0 1
(BJ420580) Dictyostelium discoideum cDNA clone:ddv39b21, 5' ... 1134 0.0 1
(BJ413027) Dictyostelium discoideum cDNA clone:ddv13k24, 5' ... 1134 0.0 1
(BJ390246) Dictyostelium discoideum cDNA clone:dds21o15, 5' ... 1134 0.0 1
(K02641) Slime mold (D.discoideum) 17S small subunit ribosom... 1126 0.0 1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri... 1126 0.0 1
(AM168039) Dictyostelium discoideum 18S rRNA gene, isolate V34. 1126 0.0 1
(X00134) Dictyostelium discoideum 17S rRNA sequence. 1122 0.0 1
(AU284274) Dictyostelium discoideum gamete cDNA clone:FC-AG2... 1120 0.0 3
(BJ442893) Dictyostelium discoideum cDNA clone:ddv51d09, 3' ... 1120 0.0 3
(BJ439066) Dictyostelium discoideum cDNA clone:ddv39g12, 3' ... 1120 0.0 3
(BJ435336) Dictyostelium discoideum cDNA clone:ddv26f24, 3' ... 1120 0.0 3
(BJ435225) Dictyostelium discoideum cDNA clone:ddv26a15, 3' ... 1120 0.0 3
(BJ430824) Dictyostelium discoideum cDNA clone:ddv8n23, 3' e... 1120 0.0 3
(BJ356426) Dictyostelium discoideum cDNA clone:dda60c12, 3' ... 1120 0.0 3
(BJ354808) Dictyostelium discoideum cDNA clone:dda54g19, 3' ... 1120 0.0 3
(BJ354039) Dictyostelium discoideum cDNA clone:dda52g07, 3' ... 1120 0.0 3
(BJ334337) Dictyostelium discoideum cDNA clone:dda45p24, 5' ... 1118 0.0 1
(BJ421110) Dictyostelium discoideum cDNA clone:ddv41a24, 5' ... 1116 0.0 1
(BJ390110) Dictyostelium discoideum cDNA clone:dds21o04, 5' ... 1116 0.0 1
(BJ369404) Dictyostelium discoideum cDNA clone:ddc50o12, 5' ... 1116 0.0 1
(BJ368609) Dictyostelium discoideum cDNA clone:ddc47j10, 5' ... 1116 0.0 1
(BJ365576) Dictyostelium discoideum cDNA clone:ddc35g24, 5' ... 1116 0.0 1
(BJ437004) Dictyostelium discoideum cDNA clone:ddv32k21, 3' ... 1112 0.0 3
(AM168038) Dictyostelium dimigraformum 18S rRNA gene, isolat... 1110 0.0 1
(AM168033) Dictyostelium citrinum 18S rRNA gene, isolate OH494. 1110 0.0 1
(BJ366646) Dictyostelium discoideum cDNA clone:ddc39b19, 5' ... 1108 0.0 1
(AM168041) Dictyostelium firmibasis 18S rRNA gene, isolate T... 1102 0.0 1
(BJ348085) Dictyostelium discoideum cDNA clone:dda32k01, 3' ... 1102 0.0 2
(AM168044) Dictyostelium intermedium 18S rRNA gene, isolate ... 1094 0.0 1
(BJ335584) Dictyostelium discoideum cDNA clone:dda50g21, 5' ... 1090 0.0 1
(AY040329) Dictyostelium dimigraformum 18S ribosomal RNA gen... 1078 0.0 1
(BJ367136) Dictyostelium discoideum cDNA clone:ddc41c17, 5' ... 1078 0.0 1
(BJ411876) Dictyostelium discoideum cDNA clone:ddv6l06, 5' e... 1070 0.0 2
(AY040330) Dictyostelium firmibasis 18S ribosomal RNA gene, ... 1063 0.0 1
(BJ327413) Dictyostelium discoideum cDNA clone:dda20h11, 5' ... 1063 0.0 2
(BJ440075) Dictyostelium discoideum cDNA clone:ddv42f14, 3' ... 1049 0.0 2
(BJ431197) Dictyostelium discoideum cDNA clone:ddv13p01, 3' ... 1049 0.0 3
(BJ424065) Dictyostelium discoideum cDNA clone:ddv51d09, 5' ... 1049 0.0 1
(BJ420278) Dictyostelium discoideum cDNA clone:ddv38e21, 5' ... 1045 0.0 1
(BJ444463) Dictyostelium discoideum cDNA clone:ddv56o10, 3' ... 1039 0.0 5
(BJ435973) Dictyostelium discoideum cDNA clone:ddv29o04, 3' ... 1025 0.0 2
(BJ431360) Dictyostelium discoideum cDNA clone:ddv13k24, 3' ... 1025 0.0 3
(BJ420522) Dictyostelium discoideum cDNA clone:ddv39g14, 5' ... 1003 0.0 3
(AU270222) Dictyostelium discoideum vegetative cDNA clone:VS... 1001 0.0 2
(BJ440304) Dictyostelium discoideum cDNA clone:ddv43c11, 3' ... 959 0.0 2
(BJ424037) Dictyostelium discoideum cDNA clone:ddv51o02, 5' ... 955 0.0 2
(BJ415058) Dictyostelium discoideum cDNA clone:ddv21e09, 5' ... 955 0.0 2
(BJ358514) Dictyostelium discoideum cDNA clone:ddc1m20, 5' e... 954 0.0 2
(BJ400215) Dictyostelium discoideum cDNA clone:dds9c11, 3' e... 926 0.0 2
(BJ443522) Dictyostelium discoideum cDNA clone:ddv53n04, 3' ... 898 0.0 5
(BJ373201) Dictyostelium discoideum cDNA clone:ddc1m20, 3' e... 884 0.0 4
(BJ436153) Dictyostelium discoideum cDNA clone:ddv30l03, 3' ... 876 0.0 4
(BJ431243) Dictyostelium discoideum cDNA clone:ddv13k11, 3' ... 870 0.0 2
(BJ424955) Dictyostelium discoideum cDNA clone:ddv54l04, 5' ... 811 0.0 2
(AY040336) Dictyostelium sphaerocephalum 18S ribosomal RNA g... 767 0.0 3
(AY040333) Dictyostelium mucoroides 18S ribosomal RNA gene, ... 759 0.0 4
(AM168050) Dictyostelium medium 18S rRNA gene, isolate TNS-C... 743 0.0 3
(AM168048) Dictyostelium longosporum 18S rRNA gene, isolate ... 743 0.0 3
(AM168035) Dictyostelium clavatum 18S rRNA gene, isolate TNS... 743 0.0 3
(AM168034) Dictyostelium clavatum 18S rRNA gene, isolate TNS... 743 0.0 3
(AM168065) Dictyostelium rosarium 18S rRNA gene, isolate M45. 735 0.0 3
(AM168055) Dictyostelium mucoroides var. stoloniferum 18S rR... 735 0.0 4
(AM168053) Dictyostelium mucoroides 18S rRNA gene, isolate T... 735 0.0 3
(AM168049) Dictyostelium macrocephalum 18S rRNA gene, isolat... 735 0.0 3
(AM168043) Dictyostelium implicatum 18S rRNA gene, isolate 9... 735 0.0 3
(AM168068) Dictyostelium sphaerocephalum 18S rRNA gene, isol... 728 0.0 3
(AM168059) Dictyostelium pseudobrefeldianum 18S rRNA gene, i... 728 0.0 4
(AM168054) Dictyostelium mucoroides 18S rRNA gene, isolate S... 728 0.0 3
(AM168028) Dictyostelium aureum 18S rRNA gene, isolate SL1. 728 0.0 3
(AM167876) Dictyostelium auroecephalum 18S rRNA gene, isolat... 728 0.0 4
(AM168030) Dictyostelium brefeldianum 18S rRNA gene, isolate... 720 0.0 3
(AM168060) Dictyostelium purpureum 18S rRNA gene, isolate C143. 712 0.0 3
(AM168037) Dictyostelium crassicaule 18S rRNA gene, isolate ... 708 0.0 4
(AM168032) Dictyostelium capitatum 18S rRNA gene, isolate 91... 704 0.0 3
(AU270223) Dictyostelium discoideum vegetative cDNA clone:VS... 702 0.0 3
(AY040331) Dictyostelium giganteum 18S ribosomal RNA gene, p... 652 0.0 5
(AM168042) Dictyostelium giganteum 18S rRNA gene, isolate WS... 652 0.0 4
(AM168031) Dictyostelium brunneum 18S rRNA gene, isolate WS700. 652 0.0 4
(DQ340386) Dictyostelium purpureum 17S ribosomal RNA, 5.8S r... 644 0.0 5
(X00601) Dictyostelium discoideum ribosomal RNA gene. 642 0.0 4
(AM168064) Dictyostelium robustum 18S rRNA gene, isolate TNS... 636 0.0 4
(AY040335) Dictyostelium purpureum 18S ribosomal RNA gene, p... 628 0.0 9
(AM168061) Dictyostelium purpureum 18S rRNA gene, isolate WS... 620 0.0 8
(AM168066) Dictyostelium septentrionalis 18S rRNA gene, isol... 605 0.0 8
(BJ443359) Dictyostelium discoideum cDNA clone:ddv52n14, 3' ... 579 0.0 4
(AY040340) Polysphondylium violaceum 18S ribosomal RNA gene,... 569 0.0 8
(AM168108) Polysphondylium violaceum 18S rRNA gene, isolate P6. 569 0.0 11
(AM168046) Dictyostelium laterosorum 18S rRNA gene, isolate ... 569 0.0 8
(AM168067) Dictyostelium septentrionalis 18S rRNA gene, isol... 537 0.0 9
(AM168069) Dictyostelium potamoides 18S rRNA gene, isolate F... 400 0.0 10
(AY040332) Dictyostelium minutum 18S ribosomal RNA gene, par... 373 0.0 10
(AM168078) Dictyostelium gracile 18S rRNA gene, isolate TNS-... 373 0.0 11
(AM168051) Dictyostelium minutum 18S rRNA gene, isolate 71-2. 373 0.0 9
(DQ340387) Dictyostelium polycephalum 17S ribosomal RNA, 5.8... 369 0.0 11
>(BJ442608) Dictyostelium discoideum cDNA clone:ddv50m12, 3' end,
single read.
Length = 791
Score = 1388 bits (700), Expect(2) = 0.0
Identities = 703/703 (100%)
Strand = Plus / Minus
Query: 585 aaaacttaccaagntaagatatagtaaggattgacagactaaaagatctttcatgattct 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaaacttaccaagntaagatatagtaaggattgacagactaaaagatctttcatgattct 730
Query: 645 ataagtggtggtgcatggtcgttcttagttggtggagcgatttgtctggtcaattccgat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ataagtggtggtgcatggtcgttcttagttggtggagcgatttgtctggtcaattccgat 670
Query: 705 aacggacgagacctcgaccctgctaactagtagtatttattagtcgatatagacgatagc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aacggacgagacctcgaccctgctaactagtagtatttattagtcgatatagacgatagc 610
Query: 765 ttttctggggtttggaatgatttcggtcatctcctgcttcaaggagtgtgtagtctgact 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttttctggggtttggaatgatttcggtcatctcctgcttcaaggagtgtgtagtctgact 550
Query: 825 cgataggtacgaattaaaacttcttagagggactacctgcctcaagcaggcggaagtccg 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cgataggtacgaattaaaacttcttagagggactacctgcctcaagcaggcggaagtccg 490
Query: 885 aggcaataacaggtctgtgatgcccttagataccttgggccgcacgcgcgctacaatgta 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aggcaataacaggtctgtgatgcccttagataccttgggccgcacgcgcgctacaatgta 430
Query: 945 ggaaacaaaaaggctcctggtccggaaggattgggtaatcatttgaatttcctacgtaac 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaaacaaaaaggctcctggtccggaaggattgggtaatcatttgaatttcctacgtaac 370
Query: 1005 tgggcttgatctttgtaattattgatcataaacgaggaattccttgtaagcgtaagtcat 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgggcttgatctttgtaattattgatcataaacgaggaattccttgtaagcgtaagtcat 310
Query: 1065 taccttatgctgaatatgtccctgccctttgtacacaccgcccgtcgctcctaccgatcg 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taccttatgctgaatatgtccctgccctttgtacacaccgcccgtcgctcctaccgatcg 250
Query: 1125 aatgatacggtaaagttaacggatcgttttatctgtggcaacactgatataaattaaaag 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aatgatacggtaaagttaacggatcgttttatctgtggcaacactgatataaattaaaag 190
Query: 1185 ttatttaaatctcattgtttagaggaaggagaagtcgtaacaaggtatccgtaggtgaac 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttatttaaatctcattgtttagaggaaggagaagtcgtaacaaggtatccgtaggtgaac 130
Query: 1245 ctgcggatggatcattttttatcttaatatcataaactttatg 1287
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctgcggatggatcattttttatcttaatatcataaactttatg 87
Score = 139 bits (70), Expect(2) = 0.0
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1295 ggataatggaactgcttgcgtataaagaaattaggctttttaattaaggtttaagnagta 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ggataatggaactgcttgcgtataaagaaattaggctttttaattaaggtttaagnagta 20
Query: 1355 agtggnctngtcagattta 1373
|||||||||||||||||||
Sbjct: 19 agtggnctngtcagattta 1
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,170,951,557
Number of extensions: 63218673
Number of successful extensions: 6525448
Number of sequences better than 10.0: 520605
Length of query: 1373
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1349
Effective length of database: 97,308,875,965
Effective search space: 131269673676785
Effective search space used: 131269673676785
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home