Homology VHI774 vs DNA
Query= VHI774 (VHI774Q) /CSM/VH/VHI7-D/VHI774Q.Seq.d/
(1310 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ423312) Dictyostelium discoideum cDNA clone:ddv48d19, 5' ... 607 0.0 2
(BJ442076) Dictyostelium discoideum cDNA clone:ddv48d19, 3' ... 646 0.0 3
(BJ446742) Dictyostelium discoideum cDNA clone:ddv63o17, 3' ... 640 0.0 3
(BJ355468) Dictyostelium discoideum cDNA clone:dda57n06, 3' ... 638 0.0 3
(BJ439559) Dictyostelium discoideum cDNA clone:ddv40i19, 3' ... 624 0.0 3
(BJ337372) Dictyostelium discoideum cDNA clone:dda57n06, 5' ... 607 0.0 2
(AU036983) Dictyostelium discoideum slug cDNA, clone SSA348. 622 e-174 1
(C83957) Dictyostelium discoideum slug cDNA, clone SLA584. 609 e-169 1
(BJ420919) Dictyostelium discoideum cDNA clone:ddv40i19, 5' ... 607 e-169 1
(BJ379678) Dictyostelium discoideum cDNA clone:ddc35k14, 3' ... 595 e-165 1
(BJ388697) Dictyostelium discoideum cDNA clone:dds6g21, 5' e... 494 e-135 1
(AU060213) Dictyostelium discoideum slug cDNA, clone SLA584. 178 3e-40 1
(AU073098) Dictyostelium discoideum slug cDNA, clone SSG130. 133 2e-30 2
(BJ399640) Dictyostelium discoideum cDNA clone:dds6g21, 3' e... 60 4e-07 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 42 4e-05 12
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.001 15
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 32 0.004 12
(Z74796) S.cerevisiae chromosome XV reading frame ORF YOL054w. 36 0.005 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.006 12
(Z74797) S.cerevisiae chromosome XV reading frame ORF YOL055c. 36 0.006 3
(AF361947) Dictyostelium discoideum SgcA (sgcA) mRNA, comple... 40 0.006 5
(BX537341) Zebrafish DNA sequence from clone CH211-103C12 in... 40 0.028 6
(BX470175) Zebrafish DNA sequence from clone DKEY-228K17 in ... 44 0.028 6
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple... 38 0.040 6
(AC173836) Strongylocentrotus purpuratus clone R3-3073P21, W... 48 0.044 2
(AQ231950) HS_3243_B1_F06_MR CIT Approved Human Genomic Sper... 44 0.048 3
(CU468723) Zebrafish DNA sequence from clone CH73-165L19 in ... 52 0.054 1
(CR394570) Zebrafish DNA sequence from clone DKEYP-9D9 in li... 44 0.14 4
(X91067) S.cerevisiae DNA from chromosome XV (contains gpd3,... 36 0.14 3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 0.15 13
(BX537340) Zebrafish DNA sequence from clone DKEYP-93A2 in l... 44 0.16 5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 42 0.16 15
(CT027609) Zebrafish DNA sequence from clone DKEY-57K17 in l... 50 0.21 1
(BX470149) Zebrafish DNA sequence from clone DKEY-242K7 in l... 50 0.21 1
(BC123761) Bos taurus homeobox B4, mRNA (cDNA clone MGC:1427... 50 0.21 1
(AC104445) Homo sapiens chromosome 3 clone RP11-444P10, comp... 50 0.21 1
(AC007599) Homo sapiens chromosome 16 clone RP11-177N22, com... 50 0.21 1
(AC145155) Homo sapiens chromosome 5 clone RP11-99N22, WORKI... 50 0.21 1
(CR933099) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.21 1
(AL345909) Tetraodon nigroviridis genome survey sequence SP6... 50 0.21 1
(B38008) HS-1046-B2-D01-MR.abi CIT Human Genomic Sperm Libra... 50 0.21 1
(AV411685) Lotus japonicus cDNA clone:MWM209h08_r, 5' end. 50 0.21 1
(CR455127) Normalized and Subtracted bovine embryonic and ex... 50 0.21 1
(BQ338024) RC3-NN0068-090600-012-b09 NN0068 Homo sapiens cDN... 50 0.21 1
(EV716899) LB02454.C21_J03 GC_BGC-24 Bos taurus cDNA clone I... 50 0.21 1
(AC177703) Strongylocentrotus purpuratus clone R3-1011J23, W... 46 0.23 6
(EV866087) rpbfe0109_k9.y1 bfe Sus scrofa cDNA 5', mRNA sequ... 38 0.24 2
(EW272612) risp20_m23.y1 isp Sus scrofa cDNA 5', mRNA sequence. 38 0.25 2
(AY428796) Dictyostelium discoideum DIF insensitive mutant A... 38 0.27 4
(EW678071) rvin015_d6.y1 vin Sus scrofa cDNA 5', mRNA sequence. 38 0.28 2
(BX950859) Zebrafish DNA sequence from clone CH211-134M1 in ... 44 0.28 7
(CL098921) ISB1-31P4_Sp6.1 ISB1 Xenopus (Silurana) tropicali... 44 0.28 2
(CT677259) Danio rerio EST, clone ZF_mu_162m07 5'. 48 0.28 2
(EV868478) rpbfe0111_a3.y1 bfe Sus scrofa cDNA 5', mRNA sequ... 38 0.29 2
(AL929039) Zebrafish DNA sequence from clone DKEY-245I6. 44 0.29 5
(CT025891) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 0.30 8
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 0.31 14
(EW270866) risp28_a1.y1 isp Sus scrofa cDNA 5', mRNA sequence. 38 0.32 2
(AC068691) Homo sapiens chromosome 18 clone RP11-105J19 map 18. 44 0.33 3
(AC011755) Homo sapiens BAC clone RP11-575M22 from 2, comple... 44 0.34 3
(AJ939957) Sus scrofa EST, clone C0007317f07, 3' direction. 38 0.35 2
(CU607082) Zebrafish DNA sequence from clone CH73-386H18 in ... 44 0.37 5
(AW415205) 49336 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence. 38 0.38 2
(EW167745) rfat0105_m11.y1 fat Sus scrofa cDNA 5', mRNA sequ... 38 0.39 2
(EW265659) risp04_c19.y1 isp Sus scrofa cDNA 5', mRNA sequence. 38 0.40 2
(EW270912) risp10_b16.y1 isp Sus scrofa cDNA 5', mRNA sequence. 38 0.41 2
(EW264422) risp35_m17.y1 isp Sus scrofa cDNA 5', mRNA sequence. 38 0.42 2
(CO953317) UMC-pfeto1-017-f08 Fetal ovary pfeto Sus scrofa c... 38 0.43 2
(EV870684) rpbfe0122_j19.y1 bfe Sus scrofa cDNA 5', mRNA seq... 38 0.43 2
(EW390755) rmga27_o13.y1 mga Sus scrofa cDNA 5', mRNA sequence. 38 0.43 2
(CR376851) Zebrafish DNA sequence from clone DKEY-48N5 in li... 44 0.44 4
(EV867579) rpbfe0102_d3.y1 bfe Sus scrofa cDNA 5', mRNA sequ... 38 0.46 2
(EV873666) rpbfe0136_c13.y1 bfe Sus scrofa cDNA 5', mRNA seq... 38 0.46 2
(CO937223) UMC-pd12con-006-b07 Day 12 conceptus pd12con Sus ... 38 0.46 2
(EW268069) risp06_l16.y1 isp Sus scrofa cDNA 5', mRNA sequence. 38 0.47 2
(EW266576) risp06_j12.y1 isp Sus scrofa cDNA 5', mRNA sequence. 38 0.47 2
(EV873300) rpbfe0124_c15.y1 bfe Sus scrofa cDNA 5', mRNA seq... 38 0.47 2
(EV866378) rpbfe0110_e22.y1 bfe Sus scrofa cDNA 5', mRNA seq... 38 0.48 2
(EW527589) rrec25_f3.y1 rec Sus scrofa cDNA 5', mRNA sequence. 38 0.51 2
(CR847922) Zebrafish DNA sequence from clone DKEYP-111B5 in ... 46 0.51 3
(EV898364) rcbe09_j22.y1 cbe Sus scrofa cDNA 5', mRNA sequence. 38 0.53 2
(DV897965) POSM0605007_J20F porcine skeletal muscle cDNA lib... 38 0.55 2
(BX119979) Zebrafish DNA sequence from clone CH211-201G8 in ... 44 0.55 6
(EV874390) rpbfe0137_g14.y1 bfe Sus scrofa cDNA 5', mRNA seq... 38 0.55 2
(EV897772) rcbe24_e6.y1 cbe Sus scrofa cDNA 5', mRNA sequence. 38 0.56 2
(AF469478) Ajaia ajaja clone 3s5/10/01 short tandem repeat. 44 0.57 2
(EW676833) rvin032_g2.y1 vin Sus scrofa cDNA 5', mRNA sequence. 38 0.57 2
(EV874455) rpbfe0132_k18.y1 bfe Sus scrofa cDNA 5', mRNA seq... 38 0.57 2
(EW675984) rvin018_m21.y1 vin Sus scrofa cDNA 5', mRNA seque... 38 0.58 2
(CT349010) Sus scrofa genomic clone CH242-333G11, genomic su... 38 0.60 2
(CO992400) UMC-pd6end2-001-e11 Endometrium gilt D6 of estrou... 38 0.60 2
(EV899374) rcbe04_f13.y1 cbe Sus scrofa cDNA 5', mRNA sequence. 38 0.61 2
(AL954843) Zebrafish DNA sequence from clone DKEY-149K8 Cont... 46 0.61 5
(EW593528) rssp26_i24.y1 ssp Sus scrofa cDNA 5', mRNA sequence. 38 0.63 2
(EW396073) rmga28_l5.y1 mga Sus scrofa cDNA 5', mRNA sequence. 38 0.63 2
(EV874405) rpbfe0118_g7.y1 bfe Sus scrofa cDNA 5', mRNA sequ... 38 0.65 2
(EV870973) rpbfe0129_c7.y1 bfe Sus scrofa cDNA 5', mRNA sequ... 38 0.65 2
(DX928300) MUGQ_CH252P079L18Sp6_CP37_021 CHORI-252 Vervet Mo... 44 0.67 2
(EW533861) rret12_k22.y1 ret Sus scrofa cDNA 5', mRNA sequence. 38 0.67 2
(EV871385) rpbfe0140_e1.y1 bfe Sus scrofa cDNA 5', mRNA sequ... 38 0.70 2
>(BJ423312) Dictyostelium discoideum cDNA clone:ddv48d19, 5' end,
single read.
Length = 636
Score = 607 bits (306), Expect(2) = 0.0
Identities = 306/306 (100%)
Strand = Plus / Plus
Query: 1 caacaacaacaattatcaaatttaaaagcagctcaagcagctgctgcaatcgctgcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaacaacaattatcaaatttaaaagcagctcaagcagctgctgcaatcgctgcttca 60
Query: 61 atagcaaataccacttcaacaccaaataccacttcaacagatattcaaaatccattcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atagcaaataccacttcaacaccaaataccacttcaacagatattcaaaatccattcaac 120
Query: 121 tttttaaataatcctttaacaaatacaaatattcaacaaagtttatttcttaatcaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttttaaataatcctttaacaaatacaaatattcaacaaagtttatttcttaatcaaaat 180
Query: 181 atacccggtgtatcaactaatcaaatgattaatagtttaaaccttgctaatggattatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atacccggtgtatcaactaatcaaatgattaatagtttaaaccttgctaatggattatta 240
Query: 241 caaaatacaacaactccacaatctcaccatacaattttagaaattaataataatcatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaaatacaacaactccacaatctcaccatacaattttagaaattaataataatcatcat 300
Query: 301 catcat 306
||||||
Sbjct: 301 catcat 306
Score = 494 bits (249), Expect(2) = 0.0
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 386 aatctatgacaaatagtggtggtagtagtagtactaatagttcaattagtagaaaaaata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatctatgacaaatagtggtggtagtagtagtactaatagttcaattagtagaaaaaata 445
Query: 446 aatttgcaaaatggaataccaatccatttatggaagaagttatttataccaataataaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatttgcaaaatggaataccaatccatttatggaagaagttatttataccaataataaag 505
Query: 506 ttggtattaatacaactacaccaactcaagcactcgctgtaaatggtaatattttagtaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttggtattaatacaactacaccaactcaagcactcgctgtaaatggtaatattttagtaa 565
Query: 566 ctggtgaattatttaaaccatcagatcaaagaattaaatcaaatattcgtcttgataata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctggtgaattatttaaaccatcagatcaaagaattaaatcaaatattcgtcttgataata 625
Query: 626 ctgatcatt 634
|||||||||
Sbjct: 626 ctgatcatt 634
Score = 36.2 bits (18), Expect(2) = 2.9
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 56 cttcaatagcaaataccacttcaaca 81
|||||| | |||||||||||||||||
Sbjct: 74 cttcaacaccaaataccacttcaaca 99
Score = 34.2 bits (17), Expect(2) = 2.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 285 taataataatcatcatcatca 305
||||||| |||||||||||||
Sbjct: 288 taataatcatcatcatcatca 308
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,334,993,671
Number of extensions: 91106564
Number of successful extensions: 8147690
Number of sequences better than 10.0: 364
Length of query: 1310
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1286
Effective length of database: 97,308,875,965
Effective search space: 125139214490990
Effective search space used: 125139214490990
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home