Homology VHE283 vs Protein
Query= VHE283 (VHE283Q) /CSM/VH/VHE2-D/VHE283Q.Seq.d/
(1334 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q6UK63) RecName: Full=Protein pirA; &AY368270_1(AY368270|pid:n... 399 e-109
AY122203_1(AY122203|pid:none) Drosophila melanogaster LD47929 fu... 139 3e-31
(Q299G2) RecName: Full=Cytoplasmic FMR1-interacting protein; Alt... 139 3e-31
BT011115_1(BT011115|pid:none) Drosophila melanogaster LD19991 fu... 139 3e-31
(Q9VF87) RecName: Full=Cytoplasmic FMR1-interacting protein; Alt... 139 3e-31
(Q7L576) RecName: Full=Cytoplasmic FMR1-interacting protein 1; A... 119 5e-25
T32647(T32647)hypothetical protein F56A11.1 - Caenorhabditis ele... 119 5e-25
D38549_1(D38549|pid:none) Homo sapiens KIAA0068 mRNA, partial cds. 119 5e-25
AY687629_1(AY687629|pid:none) Aplysia californica cytoplasmic fr... 118 7e-25
AK146613_1(AK146613|pid:none) Mus musculus 17 days pregnant adul... 118 9e-25
BC154774_1(BC154774|pid:none) Danio rerio cytoplasmic FMR1 inter... 118 9e-25
(Q90YM8) RecName: Full=Cytoplasmic FMR1-interacting protein 1 ho... 118 9e-25
BC135019_1(BC135019|pid:none) Danio rerio cytoplasmic FMR1 inter... 118 9e-25
BC047135_1(BC047135|pid:none) Mus musculus cytoplasmic FMR1 inte... 117 1e-24
CP002688_2277(CP002688|pid:none) Arabidopsis thaliana chromosome... 117 2e-24
(Q5S2C3) RecName: Full=Protein PIR; AltName: Full=PIR of plants;... 117 2e-24
AM393359_1(AM393359|pid:none) Synthetic construct Homo sapiens c... 116 3e-24
AK147632_1(AK147632|pid:none) Mus musculus adult male brain UNDE... 116 3e-24
AB093288_1(AB093288|pid:none) Mus musculus mRNA for mKIAA1168 pr... 116 3e-24
BC028941_1(BC028941|pid:none) Mus musculus cytoplasmic FMR1 inte... 116 3e-24
AM393421_1(AM393421|pid:none) Synthetic construct Homo sapiens c... 116 3e-24
AK303702_1(AK303702|pid:none) Homo sapiens cDNA FLJ55440 complet... 116 3e-24
AK147224_1(AK147224|pid:none) Mus musculus adult male kidney cDN... 116 3e-24
(Q5R414) RecName: Full=Cytoplasmic FMR1-interacting protein 2; ... 116 3e-24
BC011762_1(BC011762|pid:none) Homo sapiens cytoplasmic FMR1 inte... 116 3e-24
AK030397_1(AK030397|pid:none) Mus musculus adult male pituitary ... 116 3e-24
AF334144_1(AF334144|pid:none) Mus musculus CYFIP2 mRNA, complete... 116 3e-24
EF531617_1(EF531617|pid:none) Danio rerio cytoplasmic FMR1 inter... 113 3e-23
BC163239_1(BC163239|pid:none) Danio rerio zgc:194528, mRNA (cDNA... 113 3e-23
BC154082_1(BC154082|pid:none) Xenopus tropicalis cytoplasmic FMR... 112 4e-23
(Q6GQD1) RecName: Full=Cytoplasmic FMR1-interacting protein 2; ... 112 4e-23
AM946363_1(AM946363|pid:none) Lotus japonicus pir gene for 121F-... 109 3e-22
BC056974_1(BC056974|pid:none) Mus musculus cytoplasmic FMR1 inte... 109 3e-22
AC146587_24(AC146587|pid:none) Medicago truncatula clone mth2-14... 104 1e-20
AB050254_1(AB050254|pid:none) Macaca fascicularis brain cDNA, cl... 100 2e-19
AK127094_1(AK127094|pid:none) Homo sapiens cDNA FLJ45151 fis, cl... 100 2e-19
AK028811_1(AK028811|pid:none) Mus musculus 10 days neonate skin ... 98 9e-19
BC002174_1(BC002174|pid:none) Mus musculus cytoplasmic FMR1 inte... 96 5e-18
BC078265_1(BC078265|pid:none) Danio rerio cytoplasmic FMR1 inter... 84 2e-14
FN357433_12(FN357433|pid:none) Schistosoma mansoni genome sequen... 82 5e-14
FN357433_13(FN357433|pid:none) Schistosoma mansoni genome sequen... 82 5e-14
JI170021_1(JI170021|pid:none) TSA: Ascaris suum ASCF_4309_1846 m... 82 9e-14
AK365915_1(AK365915|pid:none) Hordeum vulgare subsp. vulgare mRN... 82 9e-14
AY809773_1(AY809773|pid:none) Schistosoma japonicum SJCHGC05302 ... 72 7e-11
CP003002_1556(CP003002|pid:none) Myceliophthora thermophila ATCC... 37 2.0
AE015929_1648(AE015929|pid:none) Staphylococcus epidermidis ATCC... 35 9.8
>(Q6UK63) RecName: Full=Protein pirA;
&AY368270_1(AY368270|pid:none)
Length = 1336
Score = 399 bits (1026), Expect = e-109
Identities = 203/203 (100%), Positives = 203/203 (100%)
Frame = +3
Query: 3 YAKIFKKNPVVPLYGDMQITLESLVKRSPHFDEKAWGTSTLDSKSALDYEIIHVLDQTRS 182
YAKIFKKNPVVPLYGDMQITLESLVKRSPHFDEKAWGTSTLDSKSALDYEIIHVLDQTRS
Sbjct: 300 YAKIFKKNPVVPLYGDMQITLESLVKRSPHFDEKAWGTSTLDSKSALDYEIIHVLDQTRS 359
Query: 183 LYNEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWK 362
LYNEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWK
Sbjct: 360 LYNEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWK 419
Query: 363 YSKPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKT 542
YSKPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKT
Sbjct: 420 YSKPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKT 479
Query: 543 IHQELQEFVQINLKETIKSFVKN 611
IHQELQEFVQINLKETIKSFVKN
Sbjct: 480 IHQELQEFVQINLKETIKSFVKN 502
Score = 323 bits (829), Expect = 1e-86
Identities = 156/162 (96%), Positives = 156/162 (96%)
Frame = +2
Query: 623 SVLQRFSSIXNIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKSFHE 802
SVLQRFSSI NIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKSFHE
Sbjct: 1096 SVLQRFSSILNIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKSFHE 1155
Query: 803 LFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAVRSDKPALKNFFKNAQIIKD 982
LFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAVRSDKPALKNFFKNAQIIKD
Sbjct: 1156 LFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAVRSDKPALKNFFKNAQIIKD 1215
Query: 983 INNQIFSILNTYCXXXXXSNMILSPPATEQAEQFIVTTTVEE 1108
INNQIFSILNTYC SNMILSPPATEQAEQFIVTTTVEE
Sbjct: 1216 INNQIFSILNTYCPPPPPSNMILSPPATEQAEQFIVTTTVEE 1257
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 3,429,379,322
Number of extensions: 71339434
Number of successful extensions: 157986
Number of sequences better than 10.0: 46
Number of HSP's gapped: 157750
Number of HSP's successfully gapped: 77
Length of query: 444
Length of database: 1,732,582,204
Length adjustment: 135
Effective length of query: 309
Effective length of database: 1,010,438,449
Effective search space: 312225480741
Effective search space used: 312225480741
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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