Homology VHE283 vs DNA
Query= VHE283 (VHE283Q) /CSM/VH/VHE2-D/VHE283Q.Seq.d/
(1334 letters)
Database: /a/DNA.DATA/ddbjhum1.seq;
/a/DNA.DATA/ddbjhum2.seq;
/a/DNA.DATA/ddbjhum3.seq;
/a/DNA.DATA/ddbjhum4.seq;
/a/DNA.DATA/ddbjhum5.seq;
/a/DDBJNEW.DATA/new_ddbjhum.seq;
/a/DNA.DATA/ddbjpri.seq;
/a/DDBJNEW.DATA/new_ddbjpri.seq;
/a/DNA.DATA/ddbjrod1.seq;
/a/DNA.DATA/ddbjrod2.seq;
/a/DNA.DATA/ddbjrod3.seq;
/a/DNA.DATA/ddbjrod4.seq;
/a/DNA.DATA/ddbjrod5.seq;
/a/DDBJNEW.DATA/new_ddbjrod.seq;
/a/DNA.DATA/ddbjmam.seq;
/a/DDBJNEW.DATA/new_ddbjmam.seq;
/a/DNA.DATA/ddbjvrt1.seq;
/a/DNA.DATA/ddbjvrt2.seq;
/a/DNA.DATA/ddbjvrt3.seq;
/a/DDBJNEW.DATA/new_ddbjvrt.seq;
/a/DNA.DATA/ddbjinv1.seq;
/a/DNA.DATA/ddbjinv2.seq;
/a/DDBJNEW.DATA/new_ddbjinv.seq;
/a/DNA.DATA/ddbjpln1.seq;
/a/DNA.DATA/ddbjpln2.seq;
/a/DNA.DATA/ddbjpln3.seq;
/a/DNA.DATA/ddbjpln4.seq;
/a/DDBJNEW.DATA/new_ddbjpln.seq;
/a/DNA.DATA/ddbjbct1.seq;
/a/DNA.DATA/ddbjbct2.seq;
/a/DNA.DATA/ddbjbct3.seq;
/a/DNA.DATA/ddbjbct4.seq;
/a/DDBJNEW.DATA/new_ddbjbct.seq;
/a/DNA.DATA/ddbjvrl1.seq;
/a/DNA.DATA/ddbjvrl2.seq;
/a/DDBJNEW.DATA/new_ddbjvrl.seq;
/a/DNA.DATA/ddbjphg.seq;
/a/DDBJNEW.DATA/new_ddbjphg.seq;
/a/DNA.DATA/ddbjuna.seq;
/a/DDBJNEW.DATA/new_ddbjuna.seq;
/a/DNA.DATA/ddbjgss1.seq;
/a/DNA.DATA/ddbjgss10.seq;
/a/DNA.DATA/ddbjgss11.seq;
/a/DNA.DATA/ddbjgss12.seq;
/a/DNA.DATA/ddbjgss13.seq;
/a/DNA.DATA/ddbjgss14.seq;
/a/DNA.DATA/ddbjgss15.seq;
/a/DNA.DATA/ddbjgss16.seq;
/a/DNA.DATA/ddbjgss17.seq;
/a/DNA.DATA/ddbjgss18.seq;
/a/DNA.DATA/ddbjgss19.seq;
/a/DNA.DATA/ddbjgss2.seq;
/a/DNA.DATA/ddbjgss20.seq;
/a/DNA.DATA/ddbjgss21.seq;
/a/DNA.DATA/ddbjgss22.seq;
/a/DNA.DATA/ddbjgss23.seq;
/a/DNA.DATA/ddbjgss24.seq;
/a/DNA.DATA/ddbjgss25.seq;
/a/DNA.DATA/ddbjgss26.seq;
/a/DNA.DATA/ddbjgss27.seq;
/a/DNA.DATA/ddbjgss28.seq;
/a/DNA.DATA/ddbjgss29.seq;
/a/DNA.DATA/ddbjgss3.seq;
/a/DNA.DATA/ddbjgss30.seq;
/a/DNA.DATA/ddbjgss31.seq;
/a/DNA.DATA/ddbjgss32.seq;
/a/DNA.DATA/ddbjgss33.seq;
/a/DNA.DATA/ddbjgss4.seq;
/a/DNA.DATA/ddbjgss5.seq;
/a/DNA.DATA/ddbjgss6.seq;
/a/DNA.DATA/ddbjgss7.seq;
/a/DNA.DATA/ddbjgss8.seq;
/a/DNA.DATA/ddbjgss9.seq;
/a/DDBJNEW.DATA/new_ddbjgss1.seq;
/a/DDBJNEW.DATA/new_ddbjgss10.seq;
/a/DDBJNEW.DATA/new_ddbjgss11.seq;
/a/DDBJNEW.DATA/new_ddbjgss12.seq;
/a/DDBJNEW.DATA/new_ddbjgss13.seq;
/a/DDBJNEW.DATA/new_ddbjgss14.seq;
/a/DDBJNEW.DATA/new_ddbjgss2.seq;
/a/DDBJNEW.DATA/new_ddbjgss3.seq;
/a/DDBJNEW.DATA/new_ddbjgss4.seq;
/a/DDBJNEW.DATA/new_ddbjgss5.seq;
/a/DDBJNEW.DATA/new_ddbjgss6.seq;
/a/DDBJNEW.DATA/new_ddbjgss7.seq;
/a/DDBJNEW.DATA/new_ddbjgss8.seq;
/a/DDBJNEW.DATA/new_ddbjgss9.seq;
/a/DNA.DATA/ddbjhtg1.seq;
/a/DNA.DATA/ddbjhtg10.seq;
/a/DNA.DATA/ddbjhtg11.seq;
/a/DNA.DATA/ddbjhtg12.seq;
/a/DNA.DATA/ddbjhtg13.seq;
/a/DNA.DATA/ddbjhtg14.seq;
/a/DNA.DATA/ddbjhtg15.seq;
/a/DNA.DATA/ddbjhtg16.seq;
/a/DNA.DATA/ddbjhtg2.seq;
/a/DNA.DATA/ddbjhtg3.seq;
/a/DNA.DATA/ddbjhtg4.seq;
/a/DNA.DATA/ddbjhtg5.seq;
/a/DNA.DATA/ddbjhtg6.seq;
/a/DNA.DATA/ddbjhtg7.seq;
/a/DNA.DATA/ddbjhtg8.seq;
/a/DNA.DATA/ddbjhtg9.seq;
/a/DDBJNEW.DATA/new_ddbjhtg1.seq;
/a/DDBJNEW.DATA/new_ddbjhtg2.seq;
/a/DDBJNEW.DATA/new_ddbjhtg3.seq;
/a/DNA.DATA/ddbjpat1.seq;
/a/DNA.DATA/ddbjpat2.seq;
/a/DNA.DATA/ddbjpat3.seq;
/a/DNA.DATA/ddbjpat4.seq;
/a/DNA.DATA/ddbjpat5.seq;
/a/DDBJNEW.DATA/new_ddbjpat.seq;
/a/DNA.DATA/ddbjsts1.seq;
/a/DNA.DATA/ddbjsts2.seq;
/a/DNA.DATA/ddbjsts3.seq;
/a/DDBJNEW.DATA/new_ddbjsts.seq;
/a/DNA.DATA/ddbjsyn.seq;
/a/DDBJNEW.DATA/new_ddbjsyn.seq;
/a/DNA.DATA/est_atha1.seq;
/a/DDBJNEW.DATA/new_est_atha1.seq;
/a/DNA.DATA/est_btra1.seq;
/a/DDBJNEW.DATA/new_est_btra1.seq;
/a/DNA.DATA/est_cele1.seq;
/a/DNA.DATA/est_crei1.seq;
/a/DDBJNEW.DATA/new_est_crei1.seq;
/a/DNA.DATA/est_cint1.seq;
/a/DNA.DATA/est_drer1.seq;
/a/DDBJNEW.DATA/new_est_drer1.seq;
/a/DNA.DATA/est_dmel1.seq;
/a/DDBJNEW.DATA/new_est_dmel1.seq;
/a/DNA.DATA/est_ggal1.seq;
/a/DDBJNEW.DATA/new_est_ggal1.seq;
/a/DNA.DATA/est_gmax1.seq;
/a/DDBJNEW.DATA/new_est_gmax1.seq;
/a/DNA.DATA/est_hum1.seq;
/a/DNA.DATA/est_hum2.seq;
/a/DNA.DATA/est_hum3.seq;
/a/DNA.DATA/est_hum4.seq;
/a/DNA.DATA/est_hum5.seq;
/a/DNA.DATA/est_hum6.seq;
/a/DDBJNEW.DATA/new_est_hum1.seq;
/a/DNA.DATA/est_hvul1.seq;
/a/DDBJNEW.DATA/new_est_hvul1.seq;
/a/DNA.DATA/est_mous1.seq;
/a/DNA.DATA/est_mous2.seq;
/a/DNA.DATA/est_mous3.seq;
/a/DDBJNEW.DATA/new_est_mous1.seq;
/a/DNA.DATA/est_mtru1.seq;
/a/DDBJNEW.DATA/new_est_mtru1.seq;
/a/DNA.DATA/est_osat1.seq;
/a/DDBJNEW.DATA/new_est_osat1.seq;
/a/DNA.DATA/est_rnor1.seq;
/a/DDBJNEW.DATA/new_est_rnor1.seq;
/a/DNA.DATA/est_taes1.seq;
/a/DDBJNEW.DATA/new_est_taes1.seq;
/a/DNA.DATA/est_xlae1.seq;
/a/DDBJNEW.DATA/new_est_xlae1.seq;
/a/DNA.DATA/est_zmay1.seq;
/a/DDBJNEW.DATA/new_est_zmay1.seq;
/a/DNA.DATA/est_rest1.seq;
/a/DNA.DATA/est_rest10.seq;
/a/DNA.DATA/est_rest11.seq;
/a/DNA.DATA/est_rest2.seq;
/a/DNA.DATA/est_rest3.seq;
/a/DNA.DATA/est_rest4.seq;
/a/DNA.DATA/est_rest5.seq;
/a/DNA.DATA/est_rest6.seq;
/a/DNA.DATA/est_rest7.seq;
/a/DNA.DATA/est_rest8.seq;
/a/DNA.DATA/est_rest9.seq;
/a/DDBJNEW.DATA/new_est_rest1.seq;
/a/DDBJNEW.DATA/new_est_rest2.seq
71,642,774 sequences; 76,246,186,917 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AY368270|AY368270.1 Dictyostelium discoideum Rac-binding com... 1203 0.0 1
EK381364|EK381364.1 1095469462626 Global-Ocean-Sampling_GS-3... 52 0.042 1
BI512543|BI512543.1 BB160009B10C07.5 Bee Brain Normalized Li... 48 0.66 1
AC169550|AC169550.2 Bos taurus clone CH240-223N3, *** SEQUEN... 48 0.66 1
AP006347|AP006347.1 Lotus japonicus genomic DNA, chromosome ... 48 0.66 1
CS459555|CS459555.1 Sequence 36 from Patent WO2006117596. 46 2.6 1
AX653967|AX653967.1 Sequence 3837 from Patent WO03000898. 46 2.6 1
AC161843|AC161843.2 Bos taurus clone CH240-101D9, *** SEQUEN... 46 2.6 1
AC066603|AC066603.3 Homo sapiens chromosome 3 clone RP11-690... 46 2.6 1
AC173386|AC173386.2 Bos taurus clone CH240-526J11, WORKING D... 46 2.6 1
AC168499|AC168499.2 Strongylocentrotus purpuratus clone R3-3... 46 2.6 1
DX481939|DX481939.1 Cpl23603 Papaya Genomic DNA BAC Library ... 46 2.6 1
DX463742|DX463742.1 Cpl05531 Papaya Genomic DNA BAC Library ... 46 2.6 1
CT195141|CT195141.1 Sus scrofa genomic clone CH242-161I5, ge... 46 2.6 1
CL965785|CL965785.1 OsIFCC012746 Oryza sativa Express Librar... 46 2.6 1
AP008208|AP008208.1 Oryza sativa (japonica cultivar-group) g... 46 2.6 1
AP004087|AP004087.3 Oryza sativa (japonica cultivar-group) g... 46 2.6 1
AF336378|AF336378.1 Mus musculus Kel blood group protein (Ke... 46 2.6 1
AC117678|AC117678.16 Mus musculus chromosome 6, clone RP23-4... 46 2.6 1
AC092941|AC092941.5 Homo sapiens 3 BAC RP11-132N15 (Roswell ... 46 2.6 1
AC068706|AC068706.6 Homo sapiens BAC clone RP11-703O4 from 2... 46 2.6 1
ER875067|ER875067.1 MUGQ_CH252P262N04Sp6_CN538_004 CHORI-252... 36 3.2 2
CT027573|CT027573.10 Zebrafish DNA sequence from clone DKEY-... 32 4.7 2
AC159043|AC159043.2 Bos taurus clone CH240-39H22, *** SEQUEN... 32 4.7 2
BX248089|BX248089.5 Zebrafish DNA sequence from clone DKEY-2... 32 4.7 2
BX569791|BX569791.4 Zebrafish DNA sequence *** SEQUENCING IN... 32 4.7 2
Z93403|Z93403.1 Human DNA sequence from clone RP1-308O1 on c... 40 6.3 4
AC173999|AC173999.3 Pan troglodytes BAC clone CH251-530E14 f... 38 6.9 2
AC018630|AC018630.40 Homo sapiens 12 BAC RP11-673D15 (Roswel... 36 7.3 6
AM675328|AM675328.1 Entamoeba terrapinae GSS, clone terra044... 42 9.4 2
DT936150|DT936150.1 BAAC-PNP1283E08.g1 C.remanei EST SB146 C... 36 9.7 2
>AY368270|AY368270.1 Dictyostelium discoideum Rac-binding component of
SCAR regulatory complex (pirA) mRNA, complete cds.
Length = 4011
Score = 1203 bits (607), Expect = 0.0
Identities = 610/611 (99%)
Strand = Plus / Plus
Query: 1 gttatgcaaagattttcaaaaagaatccagtcgtaccattgtatggtgatatgcaaatca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 896 gttatgcaaagattttcaaaaaaaatccagtcgtaccattgtatggtgatatgcaaatca 955
Query: 61 cattggaatcattggttaagagatcaccacatttcgatgagaaggcatggggtacctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 cattggaatcattggttaagagatcaccacatttcgatgagaaggcatggggtacctcaa 1015
Query: 121 cattggatagtaaatcagcgttggattacgagatcattcatgttttggaccaaacacgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 cattggatagtaaatcagcgttggattacgagatcattcatgttttggaccaaacacgtt 1075
Query: 181 ccctctacaacgagtatatggcacgttttgcaaatatggtcaacgagattagagcggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ccctctacaacgagtatatggcacgttttgcaaatatggtcaacgagattagagcggcca 1135
Query: 241 aagctcgtggtccaaaggaaccattgccattggcagagtctgatattcaagcaatcacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 aagctcgtggtccaaaggaaccattgccattggcagagtctgatattcaagcaatcacat 1195
Query: 301 tgatgggtttgaggattctctctgattggacctcaagagtacttcaacaatcggcttgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 tgatgggtttgaggattctctctgattggacctcaagagtacttcaacaatcggcttgga 1255
Query: 361 aatattctaaaccaaacaatgatccaaccatttcagcaacctttgattatgaacgtgtcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 aatattctaaaccaaacaatgatccaaccatttcagcaacctttgattatgaacgtgtcg 1315
Query: 421 ttaaattcaattataccaaagaggagagaaccgctttggttcaattgatcgccatgatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 ttaaattcaattataccaaagaggagagaaccgctttggttcaattgatcgccatgatca 1375
Query: 481 aatcattggcttcattgatgatgaagagtgaaacattacttcaaccaatacttcgtaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 aatcattggcttcattgatgatgaagagtgaaacattacttcaaccaatacttcgtaaga 1435
Query: 541 ccattcatcaagagttgcaagagtttgttcaaatcaatctcaaagagaccattaaatcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 ccattcatcaagagttgcaagagtttgttcaaatcaatctcaaagagaccattaaatcct 1495
Query: 601 ttgtaaagaat 611
|||||||||||
Sbjct: 1496 ttgtaaagaat 1506
Score = 954 bits (481), Expect(3) = 0.0
Identities = 483/484 (99%)
Strand = Plus / Plus
Query: 623 agtgtcctccaacgtttctcttcaatcnttaatattgttcgtcatgattggtctggtgct 682
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3286 agtgtcctccaacgtttctcttcaatccttaatattgttcgtcatgattggtctggtgct 3345
Query: 683 cctccagataatggtgtcatttgcgttgattcctcaacagagttttatcgtttatggagt 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3346 cctccagataatggtgtcatttgcgttgattcctcaacagagttttatcgtttatggagt 3405
Query: 743 gcccttcaatttgtaatctgttggccactctcaaatgaaaatgataaatctttccatgaa 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3406 gcccttcaatttgtaatctgttggccactctcaaatgaaaatgataaatctttccatgaa 3465
Query: 803 ttgtttggtgatggtttaatgtgggccggttgttcattgatccatttccttggtcaacaa 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3466 ttgtttggtgatggtttaatgtgggccggttgttcattgatccatttccttggtcaacaa 3525
Query: 863 tatcgtttcgaattatttgatttctgttatcacattttaaatgtagaagaggctgctgct 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3526 tatcgtttcgaattatttgatttctgttatcacattttaaatgtagaagaggctgctgct 3585
Query: 923 gttcgttcagataaacctgccttaaagaatttctttaagaatgctcaaatcatcaaagat 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3586 gttcgttcagataaacctgccttaaagaatttctttaagaatgctcaaatcatcaaagat 3645
Query: 983 atcaataatcaaatctttagtatactcaatacatattgtccaccaccaccaccttctaat 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3646 atcaataatcaaatctttagtatactcaatacatattgtccaccaccaccaccttctaat 3705
Query: 1043 atgatcctttcaccacctgctactgaacaagctgaacaatttatagttacaaccactgtt 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3706 atgatcctttcaccacctgctactgaacaagctgaacaatttatagttacaaccactgtt 3765
Query: 1103 gaag 1106
||||
Sbjct: 3766 gaag 3769
Score = 71.9 bits (36), Expect(3) = 0.0
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1170 attctggaagtagtttatcactttctgctgctggtg 1205
||||||||||||||||||||||||||||||||||||
Sbjct: 3833 attctggaagtagtttatcactttctgctgctggtg 3868
Score = 30.2 bits (15), Expect(3) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1273 gagttcaagtattga 1287
|||||||||||||||
Sbjct: 3939 gagttcaagtattga 3953
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 71642774
Number of Hits to DB: 994,963,972
Number of extensions: 57692626
Number of successful extensions: 5090266
Number of sequences better than 10.0: 31
Length of query: 1334
Length of database: 76,246,186,917
Length adjustment: 24
Effective length of query: 1310
Effective length of database: 74,526,760,341
Effective search space: 97630056046710
Effective search space used: 97630056046710
X1: 11 (21.8 bits)
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
------=_Part_0_8984226.1184335562503--
Dictyostelium discoideum cDNA Project Home