Dictyostelium discoideum cDNA Clone VHD627

Sequence VHD627

AATCATTAAA ACACACACAC ACTCAACACA CTATCACATA CATTATATAT
TTATTAAAAA TATAGAAATA ATAATAAAAT ATTACATGTA TATGAAAAAA
AGAAAAAATG CAACAACCAA TTTCGATTCA ACAACCAGTA GTTAATAATA
TAAATAATAG TCCAAATAAT CAAGCAAATA TAAATAACAA TACAACTAAT
AATACCAATA ATAATAATAA TAATAATAAT ACTACTAATA ATATTGCTAA
CAACAATAAT TCCAATAACA TCAATAATAA TAATGAAATT AATAATAGTA
ATATAAATAA TAATATAAAT AATGGTATAA ATAATGATAT AGATAGAGGT
GGTGAAAAGA AAGCAAATAA ATTAATTGCA AAAACAACAA AGAAATTTAA
TAAAGATATG ACAGCATATA CAAGTGGTAA ATTTTTTGAA CTTTGGAGAA
ATCAAGTTGT ACGTGATAAA ATATTAGGTT ATGTTAGAAT TCATAATTTA
CATTATGATA AGAGAGTTTT TAAATGTATA GATTTAAATA ATTGTATTGA
TAACGGTGCA GATTTACAAC AACAACATAA TTGTCATAGA G---------
-TGATGATTC CACCATTGGT GCAATTTTAA ATTCATTCTC ATCTTCAAGT
AGTCGTGAAA CATTCCCACG TTCTGTTGAA TCGTTACATT TAAACATTGT
AAATGTATTG GATAAAGAAA TTAACATTCC ATCCAATGTT ACTAAATTAA
TTATCACTGG TAATAATTTA CAACATGATG GTCCTGACGT TTTCATGGTT
GGTAAAAAGG GCTCAAAAAT CACTCATTTA AAACTTAGAG GTTATGAAAA
ACCTATTTGT CAAGAAATGT TTAAGAATTT AGTTAACCTA AAATCAATTC
AATTCATTGG TGCCTACAAT CATCAATTAG GACCAAACTG TTTCCCACCA
CAATCAATTA CAAATCTCGA ATTTGATTGT TTACCATCGG TCATCCCAAT
TGGTTCCTTA CCATCAACTT TAAAATCATT AAGAGTTAAA TCATTTTGTA
CTCCATTCTT AAAAAATTCA TTACCATCTT CACTCTTAAT TTTAGAATGT
GCTTTTGTTC GTTCTTTCAT TGACTCTTAT GAAATTGTTG ATGAGATATT
TGTTGAACAA CAAGCTCAAT ACGCTCAACA ACAATTATTA CAAAATGAAC
AAGCATTACA AGCTCAAAAA CAATTAGAAA TACAACAACA AGTGCTCAAC
AAAGNATTAC AACAATTAAA A

Translated Amino Acid Sequence VHD627

slkhthtqhtityiiyllki*k***nitci*KKEKMQQPISIQQPVVNNINNSPNNQANI
NNNTTNNTNNNNNNNNTTNNIANNNNSNNINNNNEINNSNINNNINNGINNDIDRGGEKK
ANKLIAKTTKKFNKDMTAYTSGKFFELWRNQVVRDKILGYVRIHNLHYDKRVFKCIDLNN
CIDNGADLQQQHNCHR---

---DDSTIGAILNSFSSSSSRETFPRSVESLHLNIVNVLDKEINIPSNVTKLIITGNNLQ
HDGPDVFMVGKKGSKITHLKLRGYEKPICQEMFKNLVNLKSIQFIGAYNHQLGPNCFPPQ
SITNLEFDCLPSVIPIGSLPSTLKSLRVKSFCTPFLKNSLPSSLLILECAFVRSFIDSYE
IVDEIFVEQQAQYAQQQLLQNEQALQAQKQLEIQQQVLNKXLQQLK

Homology VHD627 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHD627 (VHD627Q) /CSM/VH/VHD6-B/VHD627Q.Seq.d/                       1778   0.0
CHO169 (CHO169Q) /CSM/CH/CHO1-C/CHO169Q.Seq.d/                       1009   0.0
AHA596 (AHA596Q) /CSM/AH/AHA5-D/AHA596Q.Seq.d/                        993   0.0
AHQ254 (AHQ254Q) /CSM/AH/AHQ2-C/AHQ254Q.Seq.d/                        874   0.0
SHF646 (SHF646Q) /CSM/SH/SHF6-B/SHF646Q.Seq.d/                        496   e-139
CHH261 (CHH261Q) /CSM/CH/CHH2-C/CHH261Q.Seq.d/                        496   e-139
VFM874 (VFM874Q) /CSM/VF/VFM8-D/VFM874Q.Seq.d/                         42   0.021
VFH108 (VFH108Q) /CSM/VF/VFH1-A/VFH108Q.Seq.d/                         42   0.021
SLA528 (SLA528Q) /CSM/SL/SLA5-B/SLA528Q.Seq.d/                         42   0.021
FC-IC0784 (FC-IC0784Q) /CSM/FC-IC/FC-IC0784Q.Seq.d/                    40   0.081

Homology VHD627 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 ma...  1138   0.0    1
AM484068|AM484068.2 Vitis vinifera contig VV78X098699.5, who...    46   0.007  3
AC181677|AC181677.1 Strongylocentrotus purpuratus clone R3-1...    40   0.27   6
AC180191|AC180191.1 Strongylocentrotus purpuratus clone R3-3...    48   0.63   1
AC176043|AC176043.1 Strongylocentrotus purpuratus clone R3-1...    48   0.63   1
CT390695|CT390695.1 Sus scrofa genomic clone PigE-44F18, gen...    38   0.68   2
AL732603|AL732603.3 Mouse DNA sequence from clone RP23-154H8...    42   0.83   3
AL163227|AL163227.2 Homo sapiens chromosome 21 segment HS21C...    36   1.2    2
AC130119|AC130119.4 Rattus norvegicus clone CH230-26A13, WOR...    34   1.2    2
AP000475|AP000475.4 Homo sapiens genomic DNA, chromosome 21 ...    36   1.3    2

Homology VHD627 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...   355   4e-96
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    53   3e-05
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...    45   0.008
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    43   0.032
(Q552Z2) RecName: Full=Probable serine/threonine-protein kinase ...    42   0.054
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    39   0.46
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    38   1.0
HB807279_1(HB807279|pid:none) Sequence 156493 from Patent EP2090...    37   1.7
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom...    37   1.7
AP005633_7(AP005633|pid:none) Oryza sativa Japonica Group genomi...    37   1.7

Homology VHD627 vs Genome