Dictyostelium discoideum cDNA Clone VHD171

Sequence VHD171

ATAAAACATA CAAAATGTCA AAAAATTCAG GTTTACCATC ATTCGCTTCA
ACTGAAGCTG ATAATTCACA AGGTTTTGTA TTATCAGTAT CAGGTCCAGT
CGTAATTGCT AATCAATTAG CTGGTGCTGC TATGTACGAG TTGGTTCGTG
TAGGTCACAA TCAATTAGTT GGTGAAATTA TTAGATTAGA AGAAGATACT
GCCACAATTC AAGTTTACGA AGAAACTTCT GGTTTAACTG TTGGTGATCC
AGTATTAAGA ACTCATAAAC CATTAACAGT TGAATTAGGT CCAGGTATTA
TGAATAATAT TTTTGATGGT ATTCAACGTC CATTAAATGC AATTGCAGAG
ATTACAAAAG GTATTTATAT TCCAAGAGGT ATTAATACTC CATCATTAAA
TAGAACTATT AAATGGCCAT ATCAACCAGA TACCAAATTA AAAGTTGGTG
ACAATGTTAG TGGTGGTGAT ATTTTTGGTC AAGTTGTTGA AAATAATTTA
ATCATCCATA AGATTATGGT TCCACCAAAG GAAATGGGTA CCATCGTAGA
GATTGCACCA GCTGGTGAAT ACACTTTGGA TCATGCACTT T---------
-CTGGTCGTG TATCATGTAT TGGTCATCCA ACTCGTATTG GTTCAGTTAC
AATNGTCGGT GCAGTCTCTC CCCCAGGTGG AGATTTTGCT GATCCAGTCA
CTGCTGCCAC TTTAGGTATC GTCCAAGTAT TCTGGGGTTT AGATAAAAAA
TTAGCACAAC GTAAACATTT CCCATCCATC AATTGGTTAA TTTCTTTCTC
CAAATATATG CAAGCTCTTG ATACTCATTA TGATCAAATG GATCCAGAAT
TCGTTCCACT CCGTACCAGA GCCAAGGAAA TTCTTCAAAT GGAAGAAGAT
CTCTCTGAAA TCGTCCAATT GGTCGGTCAA GATTCTTTAG GTGAATCTGA
AAAGATTACC ATTGAAGTCG CTCGTATTAT TCGTGATGAT TTCCTTCAAC
AAAATGGTTT CTCTCCATAC GATAAATGTT GTCCATTCTT CAAGACCGTT
TGGATGTTAA AGAATATGAT GACTTTCTAC AATTTAGCAC AAAAAGCTGT
TGAATCAAGT ACCGCTGATA ATAAAGTTAC TTGGAATCAA ATTAAAAATG
AATTAAAAGA AATCATTCAC AGAATTACTT CAATGAAATT CCAAGATCCA
ACTGACGGTG AACAAACTTT AACTGCTCAT TTCTCAACTC TCAATGAAGA
TATCATTACT GCTTTCAGAA ACTTTAGTGA TTTAGTTTAA AATAAATGAT
ATTAATAAAA AATAATATAA ATATATAANA GTAAATAAAA AAATAAAAAA
AG

Translated Amino Acid Sequence VHD171

KTYKMSKNSGLPSFASTEADNSQGFVLSVSGPVVIANQLAGAAMYELVRVGHNQLVGEII
RLEEDTATIQVYEETSGLTVGDPVLRTHKPLTVELGPGIMNNIFDGIQRPLNAIAEITKG
IYIPRGINTPSLNRTIKWPYQPDTKLKVGDNVSGGDIFGQVVENNLIIHKIMVPPKEMGT
IVEIAPAGEYTLDHAL---

---GRVSCIGHPTRIGSVTXVGAVSPPGGDFADPVTAATLGIVQVFWGLDKKLAQRKHFP
SINWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQLVGQDSLGESEK
ITIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAVESSTADNKVTW
NQIKNELKEIIHRITSMKFQDPTDGEQTLTAHFSTLNEDIITAFRNFSDLV*nk*y**ki
i*iyxsk*knkk

Homology VHD171 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHD171 (VHD171Q) /CSM/VH/VHD1-C/VHD171Q.Seq.d/                       2486   0.0
VHP385 (VHP385Q) /CSM/VH/VHP3-D/VHP385Q.Seq.d/                       1354   0.0
SLE162 (SLE162Q) /CSM/SL/SLE1-C/SLE162Q.Seq.d/                       1354   0.0
VFC688 (VFC688Q) /CSM/VF/VFC6-D/VFC688Q.Seq.d/                       1352   0.0
VFC742 (VFC742Q) /CSM/VF/VFC7-B/VFC742Q.Seq.d/                       1350   0.0
VHH516 (VHH516Q) /CSM/VH/VHH5-A/VHH516Q.Seq.d/                       1348   0.0
VHL630 (VHL630Q) /CSM/VH/VHL6-B/VHL630Q.Seq.d/                       1346   0.0
VFC543 (VFC543Q) /CSM/VF/VFC5-B/VFC543Q.Seq.d/                       1344   0.0
VHB101 (VHB101Q) /CSM/VH/VHB1-A/VHB101Q.Seq.d/                       1342   0.0
VHJ289 (VHJ289Q) /CSM/VH/VHJ2-D/VHJ289Q.Seq.d/                       1338   0.0

Homology VHD171 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U49169|U49169.1 Dictyostelium discoideum V-ATPase A subunit ...  1354   0.0    1
L43963|L43963.1 Dictyostelium discoideum vacuolar proton tra...   460   0.0    2
AB093510|AB093510.1 Saccharomyces exiguus VMA1-2 gene for va...    80   4e-41  7
AB093509|AB093509.1 Saccharomyces exiguus VMA1-1 gene for va...    74   7e-35  7
BI772943|BI772943.1 kq08f06.y1 TBN95TM-SSR Strongyloides ste...   115   2e-32  3
AB093511|AB093511.1 Saccharomyces unisporus VMA1 gene for va...    74   4e-28  4
AR548187|AR548187.1 Sequence 3318 from patent US 6747137.          62   5e-27  5
DY892011|DY892011.1 CeleSEQ8899 Cunninghamella elegans pBlue...   117   1e-25  3
CR382136|CR382136.1 Debaryomyces hansenii chromosome D of st...    76   1e-25  4
AB093506|AB093506.1 Kluyveromyces lactis VMA1 gene for vacuo...    58   2e-25  8

Homology VHD171 vs Protein

Sequences producing significant alignments:                      (bits) Value


(P54647) RecName: Full=V-type proton ATPase catalytic subunit A;...   462   e-128
(P38607) Vacuolar ATP synthase catalytic subunit A, osteoclast i...   318   3e-85
A56807(A56807) H+-transporting two-sector ATPase (EC 3.6.3.14), ...   317   7e-85
I50715(I50715) A2 isoform of vacuolar H+-ATPase subunit A - chic...   315   4e-84
(Q90647) RecName: Full=V-type proton ATPase catalytic subunit A;...   315   4e-84
AX407287_1(AX407287|pid:none) Sequence 58 from Patent WO0226984.      315   5e-84
(P31404) RecName: Full=V-type proton ATPase catalytic subunit A;...   314   6e-84
M80430_1(M80430|pid:none) Bovine vacuolar H+-ATPase A subunit mR...   314   6e-84
BC105145_1(BC105145|pid:none) Bos taurus ATPase, H+ transporting...   314   6e-84
(P31400) RecName: Full=V-type proton ATPase catalytic subunit A;...   313   1e-83

Homology VHD171 vs Genome