Homology VHC604 vs Protein
Query= VHC604 (VHC604Q) /CSM/VH/VHC6-A/VHC604Q.Seq.d/
(692 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q6UK63) RecName: Full=Protein pirA; &AY368270_1(AY368270|pid:n... 326 6e-88
CP002688_2277(CP002688|pid:none) Arabidopsis thaliana chromosome... 111 3e-23
(Q5S2C3) RecName: Full=Protein PIR; AltName: Full=PIR of plants;... 111 3e-23
AC146587_24(AC146587|pid:none) Medicago truncatula clone mth2-14... 111 3e-23
AM946363_1(AM946363|pid:none) Lotus japonicus pir gene for 121F-... 111 3e-23
AY122203_1(AY122203|pid:none) Drosophila melanogaster LD47929 fu... 111 4e-23
(Q299G2) RecName: Full=Cytoplasmic FMR1-interacting protein; Alt... 111 4e-23
BT011115_1(BT011115|pid:none) Drosophila melanogaster LD19991 fu... 111 4e-23
(Q9VF87) RecName: Full=Cytoplasmic FMR1-interacting protein; Alt... 111 4e-23
AY687629_1(AY687629|pid:none) Aplysia californica cytoplasmic fr... 100 9e-20
(Q7L576) RecName: Full=Cytoplasmic FMR1-interacting protein 1; A... 94 5e-18
D38549_1(D38549|pid:none) Homo sapiens KIAA0068 mRNA, partial cds. 94 5e-18
(Q90YM8) RecName: Full=Cytoplasmic FMR1-interacting protein 1 ho... 93 1e-17
AK146613_1(AK146613|pid:none) Mus musculus 17 days pregnant adul... 93 1e-17
BC047135_1(BC047135|pid:none) Mus musculus cytoplasmic FMR1 inte... 93 1e-17
AK028811_1(AK028811|pid:none) Mus musculus 10 days neonate skin ... 93 1e-17
BC154774_1(BC154774|pid:none) Danio rerio cytoplasmic FMR1 inter... 91 5e-17
BC135019_1(BC135019|pid:none) Danio rerio cytoplasmic FMR1 inter... 91 7e-17
EF531617_1(EF531617|pid:none) Danio rerio cytoplasmic FMR1 inter... 88 3e-16
BC163239_1(BC163239|pid:none) Danio rerio zgc:194528, mRNA (cDNA... 88 3e-16
AM393359_1(AM393359|pid:none) Synthetic construct Homo sapiens c... 88 4e-16
AK147632_1(AK147632|pid:none) Mus musculus adult male brain UNDE... 88 4e-16
AB093288_1(AB093288|pid:none) Mus musculus mRNA for mKIAA1168 pr... 88 4e-16
AM393421_1(AM393421|pid:none) Synthetic construct Homo sapiens c... 88 4e-16
AK303702_1(AK303702|pid:none) Homo sapiens cDNA FLJ55440 complet... 88 4e-16
AK147224_1(AK147224|pid:none) Mus musculus adult male kidney cDN... 88 4e-16
(Q5R414) RecName: Full=Cytoplasmic FMR1-interacting protein 2; ... 88 4e-16
BC011762_1(BC011762|pid:none) Homo sapiens cytoplasmic FMR1 inte... 88 4e-16
AK030397_1(AK030397|pid:none) Mus musculus adult male pituitary ... 88 4e-16
BC056974_1(BC056974|pid:none) Mus musculus cytoplasmic FMR1 inte... 88 4e-16
AF334144_1(AF334144|pid:none) Mus musculus CYFIP2 mRNA, complete... 88 4e-16
(Q6GQD1) RecName: Full=Cytoplasmic FMR1-interacting protein 2; ... 86 1e-15
BC154082_1(BC154082|pid:none) Xenopus tropicalis cytoplasmic FMR... 86 2e-15
T32647(T32647)hypothetical protein F56A11.1 - Caenorhabditis ele... 83 1e-14
FN357433_12(FN357433|pid:none) Schistosoma mansoni genome sequen... 61 4e-08
FN357433_13(FN357433|pid:none) Schistosoma mansoni genome sequen... 61 4e-08
BC078265_1(BC078265|pid:none) Danio rerio cytoplasmic FMR1 inter... 52 4e-05
CP002453_3933(CP002453|pid:none) Cellulophaga algicola DSM 14237... 37 1.2
CP000922_1185(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 36 2.0
CP002792_1056(CP002792|pid:none) Methanothermococcus okinawensis... 35 2.6
AP012202_852(AP012202|pid:none) Candidatus Arthromitus sp. SFB-m... 35 3.4
AY692272_1(AY692272|pid:none) Borrelia turicatae P-209 gene, com... 34 7.6
CP000743_1095(CP000743|pid:none) Methanococcus aeolicus Nankai-3... 34 7.6
CP002737_378(CP002737|pid:none) Methanotorris igneus Kol 5, comp... 34 7.6
FQ032826_21(FQ032826|pid:none) Uncultured Sphingobacteria bacter... 34 7.6
AE013599_51(AE013599|pid:none) Drosophila melanogaster chromosom... 33 9.9
HE575324_1535(HE575324|pid:none) Trypanosoma congolense IL3000 a... 33 9.9
CP002687_1874(CP002687|pid:none) Arabidopsis thaliana chromosome... 33 9.9
>(Q6UK63) RecName: Full=Protein pirA;
&AY368270_1(AY368270|pid:none)
Length = 1336
Score = 326 bits (836), Expect = 6e-88
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 193 NEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWKYS 372
NEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWKYS
Sbjct: 362 NEYMARFANMVNEIRAAKARGPKEPLPLAESDIQAITLMGLRILSDWTSRVLQQSAWKYS 421
Query: 373 KPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKTIH 552
KPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKTIH
Sbjct: 422 KPNNDPTISATFDYERVVKFNYTKEERTALVQLIAMIKSLASLMMKSETLLQPILRKTIH 481
Query: 553 QELQEFVQINLKETIKSFVKNNPKKKDNIKLEMSQLKNISVDWFSG 690
QELQEFVQINLKETIKSFVKNNPKKKDNIKLEMSQLKNISVDWFSG
Sbjct: 482 QELQEFVQINLKETIKSFVKNNPKKKDNIKLEMSQLKNISVDWFSG 527
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,804,722,590
Number of extensions: 35353666
Number of successful extensions: 79790
Number of sequences better than 10.0: 48
Number of HSP's gapped: 79724
Number of HSP's successfully gapped: 48
Length of query: 230
Length of database: 1,732,582,204
Length adjustment: 127
Effective length of query: 103
Effective length of database: 1,053,232,153
Effective search space: 108482911759
Effective search space used: 108482911759
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
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