Homology VHC604 vs DNA
Query= VHC604 (VHC604Q) /CSM/VH/VHC6-A/VHC604Q.Seq.d/
(692 letters)
Database: /db/pub/db/a/DNA.DATA/ddbjhum1.seq;
/db/pub/db/a/DNA.DATA/ddbjhum2.seq;
/db/pub/db/a/DNA.DATA/ddbjhum3.seq;
/db/pub/db/a/DNA.DATA/ddbjhum4.seq;
/db/pub/db/a/DNA.DATA/ddbjhum5.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjhum.seq;
/db/pub/db/a/DNA.DATA/ddbjpri.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjpri.seq;
/db/pub/db/a/DNA.DATA/ddbjrod1.seq;
/db/pub/db/a/DNA.DATA/ddbjrod2.seq;
/db/pub/db/a/DNA.DATA/ddbjrod3.seq;
/db/pub/db/a/DNA.DATA/ddbjrod4.seq;
/db/pub/db/a/DNA.DATA/ddbjrod5.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjrod.seq;
/db/pub/db/a/DNA.DATA/ddbjmam.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjmam.seq;
/db/pub/db/a/DNA.DATA/ddbjvrt1.seq;
/db/pub/db/a/DNA.DATA/ddbjvrt2.seq;
/db/pub/db/a/DNA.DATA/ddbjvrt3.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjvrt.seq;
/db/pub/db/a/DNA.DATA/ddbjinv1.seq;
/db/pub/db/a/DNA.DATA/ddbjinv2.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjinv.seq;
/db/pub/db/a/DNA.DATA/ddbjpln1.seq;
/db/pub/db/a/DNA.DATA/ddbjpln2.seq;
/db/pub/db/a/DNA.DATA/ddbjpln3.seq;
/db/pub/db/a/DNA.DATA/ddbjpln4.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjpln.seq;
/db/pub/db/a/DNA.DATA/ddbjbct1.seq;
/db/pub/db/a/DNA.DATA/ddbjbct2.seq;
/db/pub/db/a/DNA.DATA/ddbjbct3.seq;
/db/pub/db/a/DNA.DATA/ddbjbct4.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjbct.seq;
/db/pub/db/a/DNA.DATA/ddbjvrl1.seq;
/db/pub/db/a/DNA.DATA/ddbjvrl2.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjvrl.seq;
/db/pub/db/a/DNA.DATA/ddbjphg.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjphg.seq;
/db/pub/db/a/DNA.DATA/ddbjuna.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjuna.seq;
/db/pub/db/a/DNA.DATA/ddbjgss1.seq;
/db/pub/db/a/DNA.DATA/ddbjgss10.seq;
/db/pub/db/a/DNA.DATA/ddbjgss11.seq;
/db/pub/db/a/DNA.DATA/ddbjgss12.seq;
/db/pub/db/a/DNA.DATA/ddbjgss13.seq;
/db/pub/db/a/DNA.DATA/ddbjgss14.seq;
/db/pub/db/a/DNA.DATA/ddbjgss15.seq;
/db/pub/db/a/DNA.DATA/ddbjgss16.seq;
/db/pub/db/a/DNA.DATA/ddbjgss17.seq;
/db/pub/db/a/DNA.DATA/ddbjgss18.seq;
/db/pub/db/a/DNA.DATA/ddbjgss19.seq;
/db/pub/db/a/DNA.DATA/ddbjgss2.seq;
/db/pub/db/a/DNA.DATA/ddbjgss20.seq;
/db/pub/db/a/DNA.DATA/ddbjgss21.seq;
/db/pub/db/a/DNA.DATA/ddbjgss22.seq;
/db/pub/db/a/DNA.DATA/ddbjgss23.seq;
/db/pub/db/a/DNA.DATA/ddbjgss24.seq;
/db/pub/db/a/DNA.DATA/ddbjgss25.seq;
/db/pub/db/a/DNA.DATA/ddbjgss26.seq;
/db/pub/db/a/DNA.DATA/ddbjgss27.seq;
/db/pub/db/a/DNA.DATA/ddbjgss28.seq;
/db/pub/db/a/DNA.DATA/ddbjgss29.seq;
/db/pub/db/a/DNA.DATA/ddbjgss3.seq;
/db/pub/db/a/DNA.DATA/ddbjgss30.seq;
/db/pub/db/a/DNA.DATA/ddbjgss31.seq;
/db/pub/db/a/DNA.DATA/ddbjgss32.seq;
/db/pub/db/a/DNA.DATA/ddbjgss33.seq;
/db/pub/db/a/DNA.DATA/ddbjgss4.seq;
/db/pub/db/a/DNA.DATA/ddbjgss5.seq;
/db/pub/db/a/DNA.DATA/ddbjgss6.seq;
/db/pub/db/a/DNA.DATA/ddbjgss7.seq;
/db/pub/db/a/DNA.DATA/ddbjgss8.seq;
/db/pub/db/a/DNA.DATA/ddbjgss9.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss10.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss11.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss12.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss13.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss14.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss2.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss3.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss4.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss5.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss6.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss7.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss8.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjgss9.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg1.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg10.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg11.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg12.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg13.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg14.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg15.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg16.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg2.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg3.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg4.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg5.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg6.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg7.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg8.seq;
/db/pub/db/a/DNA.DATA/ddbjhtg9.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjhtg1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjhtg2.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjhtg3.seq;
/db/pub/db/a/DNA.DATA/ddbjpat1.seq;
/db/pub/db/a/DNA.DATA/ddbjpat2.seq;
/db/pub/db/a/DNA.DATA/ddbjpat3.seq;
/db/pub/db/a/DNA.DATA/ddbjpat4.seq;
/db/pub/db/a/DNA.DATA/ddbjpat5.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjpat.seq;
/db/pub/db/a/DNA.DATA/ddbjsts1.seq;
/db/pub/db/a/DNA.DATA/ddbjsts2.seq;
/db/pub/db/a/DNA.DATA/ddbjsts3.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjsts.seq;
/db/pub/db/a/DNA.DATA/ddbjsyn.seq;
/db/pub/db/a/DDBJNEW.DATA/new_ddbjsyn.seq;
/db/pub/db/a/DNA.DATA/est_atha1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_atha1.seq;
/db/pub/db/a/DNA.DATA/est_btra1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_btra1.seq;
/db/pub/db/a/DNA.DATA/est_cele1.seq;
/db/pub/db/a/DNA.DATA/est_crei1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_crei1.seq;
/db/pub/db/a/DNA.DATA/est_cint1.seq;
/db/pub/db/a/DNA.DATA/est_drer1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_drer1.seq;
/db/pub/db/a/DNA.DATA/est_dmel1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_dmel1.seq;
/db/pub/db/a/DNA.DATA/est_ggal1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_ggal1.seq;
/db/pub/db/a/DNA.DATA/est_gmax1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_gmax1.seq;
/db/pub/db/a/DNA.DATA/est_hum1.seq;
/db/pub/db/a/DNA.DATA/est_hum2.seq;
/db/pub/db/a/DNA.DATA/est_hum3.seq;
/db/pub/db/a/DNA.DATA/est_hum4.seq;
/db/pub/db/a/DNA.DATA/est_hum5.seq;
/db/pub/db/a/DNA.DATA/est_hum6.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_hum1.seq;
/db/pub/db/a/DNA.DATA/est_hvul1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_hvul1.seq;
/db/pub/db/a/DNA.DATA/est_mous1.seq;
/db/pub/db/a/DNA.DATA/est_mous2.seq;
/db/pub/db/a/DNA.DATA/est_mous3.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_mous1.seq;
/db/pub/db/a/DNA.DATA/est_mtru1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_mtru1.seq;
/db/pub/db/a/DNA.DATA/est_osat1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_osat1.seq;
/db/pub/db/a/DNA.DATA/est_rnor1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_rnor1.seq;
/db/pub/db/a/DNA.DATA/est_taes1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_taes1.seq;
/db/pub/db/a/DNA.DATA/est_xlae1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_xlae1.seq;
/db/pub/db/a/DNA.DATA/est_zmay1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_zmay1.seq;
/db/pub/db/a/DNA.DATA/est_rest1.seq;
/db/pub/db/a/DNA.DATA/est_rest10.seq;
/db/pub/db/a/DNA.DATA/est_rest11.seq;
/db/pub/db/a/DNA.DATA/est_rest2.seq;
/db/pub/db/a/DNA.DATA/est_rest3.seq;
/db/pub/db/a/DNA.DATA/est_rest4.seq;
/db/pub/db/a/DNA.DATA/est_rest5.seq;
/db/pub/db/a/DNA.DATA/est_rest6.seq;
/db/pub/db/a/DNA.DATA/est_rest7.seq;
/db/pub/db/a/DNA.DATA/est_rest8.seq;
/db/pub/db/a/DNA.DATA/est_rest9.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_rest1.seq;
/db/pub/db/a/DDBJNEW.DATA/new_est_rest2.seq
71,424,958 sequences; 75,242,108,524 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AY368270|AY368270.1 Dictyostelium discoideum Rac-binding com... 995 0.0 1
EK381364|EK381364.1 1095469462626 Global-Ocean-Sampling_GS-3... 52 0.021 1
AP006347|AP006347.1 Lotus japonicus genomic DNA, chromosome ... 48 0.33 1
AX653967|AX653967.1 Sequence 3837 from Patent WO03000898. 46 1.3 1
CL965785|CL965785.1 OsIFCC012746 Oryza sativa Express Librar... 46 1.3 1
AP008208|AP008208.1 Oryza sativa (japonica cultivar-group) g... 46 1.3 1
AP004087|AP004087.3 Oryza sativa (japonica cultivar-group) g... 46 1.3 1
AC109180|AC109180.20 Mus musculus chromosome 10, clone RP23-... 46 1.3 1
BJ701745|BJ701745.1 Ptyochromis sp. 'redtail sheller' cDNA c... 34 2.2 2
AX647391|AX647391.1 Sequence 1583 from Patent EP1270724. 36 4.6 2
AC136840|AC136840.24 Medicago truncatula clone mth2-33n3, co... 40 4.7 2
DT609246|DT609246.1 ACAG-aab11g11.g1 Hydra_EST_UCI-9 Hydra m... 44 5.2 1
DN245705|DN245705.2 ACAE-aaa29b08.b1 Hydra EST UCI 5 Hydra m... 44 5.2 1
DN245681|DN245681.2 ACAE-aaa29f14.b1 Hydra EST UCI 5 Hydra m... 44 5.2 1
CN773855|CN773855.1 taf58b11.x2 Hydra EST Darmstadt I Hydra ... 44 5.2 1
AC137263|AC137263.1 Rattus norvegicus clone CH230-unknown, *... 44 5.2 1
AC133258|AC133258.2 Rattus norvegicus clone CH230-325I17, **... 44 5.2 1
AC094034|AC094034.7 Rattus norvegicus clone CH230-88O16, WOR... 44 5.2 1
AC026633|AC026633.3 Homo sapiens chromosome 7 clone RP11-448... 44 5.2 1
AM613284|AM613284.1 Entamoeba invadens IP1 GSS, clone inv035... 44 5.2 1
AM464673|AM464673.1 Vitis vinifera, whole genome shotgun seq... 44 5.2 1
CR391945|CR391945.9 Zebrafish DNA sequence from clone CH211-... 44 5.2 1
BX511246|BX511246.4 Zebrafish DNA sequence from clone DKEY-2... 44 5.2 1
AC154254|AC154254.2 Mus musculus BAC clone RP24-201L14 from ... 44 5.2 1
AC015983|AC015983.7 Homo sapiens BAC clone RP11-560I19 from ... 44 5.2 1
AC010135|AC010135.3 Homo sapiens BAC clone RP11-128D13 from ... 40 7.4 2
>AY368270|AY368270.1 Dictyostelium discoideum Rac-binding component of
SCAR regulatory complex (pirA) mRNA, complete cds.
Length = 4011
Score = 995 bits (502), Expect = 0.0
Identities = 502/502 (100%)
Strand = Plus / Plus
Query: 191 acaacgagtatatggcacgttttgcaaatatggtcaacgagattagagcggccaaagctc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 acaacgagtatatggcacgttttgcaaatatggtcaacgagattagagcggccaaagctc 1141
Query: 251 gtggtccaaaggaaccattgccattggcagagtctgatattcaagcaatcacattgatgg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 gtggtccaaaggaaccattgccattggcagagtctgatattcaagcaatcacattgatgg 1201
Query: 311 gtttgaggattctctctgattggacctcaagagtacttcaacaatcggcttggaaatatt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 gtttgaggattctctctgattggacctcaagagtacttcaacaatcggcttggaaatatt 1261
Query: 371 ctaaaccaaacaatgatccaaccatttcagcaacctttgattatgaacgtgtcgttaaat 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 ctaaaccaaacaatgatccaaccatttcagcaacctttgattatgaacgtgtcgttaaat 1321
Query: 431 tcaattataccaaagaggagagaaccgctttggttcaattgatcgccatgatcaaatcat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 tcaattataccaaagaggagagaaccgctttggttcaattgatcgccatgatcaaatcat 1381
Query: 491 tggcttcattgatgatgaagagtgaaacattacttcaaccaatacttcgtaagaccattc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 tggcttcattgatgatgaagagtgaaacattacttcaaccaatacttcgtaagaccattc 1441
Query: 551 atcaagagttgcaagagtttgttcaaatcaatctcaaagagaccattaaatcctttgtaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1442 atcaagagttgcaagagtttgttcaaatcaatctcaaagagaccattaaatcctttgtaa 1501
Query: 611 agaataatccaaagaagaaggataacatcaaattggagatgtcacaattgaagaatatct 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 agaataatccaaagaagaaggataacatcaaattggagatgtcacaattgaagaatatct 1561
Query: 671 ctgtcgattggttcagtggttt 692
||||||||||||||||||||||
Sbjct: 1562 ctgtcgattggttcagtggttt 1583
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 71424958
Number of Hits to DB: 478,966,415
Number of extensions: 27685682
Number of successful extensions: 2042280
Number of sequences better than 10.0: 27
Length of query: 692
Length of database: 75,242,108,524
Length adjustment: 23
Effective length of query: 669
Effective length of database: 73,599,334,490
Effective search space: 49237954773810
Effective search space used: 49237954773810
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
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Dictyostelium discoideum cDNA Project Home