<List of Series> <Series: VHC5-C> <Clone: VHC570> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Clone VHC570
Dictyostelium discoideum cDNA Project Home
Sequence VHC570
CTTTATTTAG TCGTCATAAA CAGAATATAT AAAGAGATCA ATGGCTGATA
CTACAACTGC TGCTCAAGCC GATCAAAAAC CAACTCGTGC TTTTGGTGCT
GGTCGTCCAC AAAGAGGTGC TGGTGGTGCC CCACAAAGAG GTGGTCCACG
TCCACAAAGA GGTGGTCAAG GTGAAACCAA ATCATGGACT CCAGTCACCA
AATTAGGTCG TCTCGTTGCT CTTGGTTTAG TCGAGAATAT CCACGAAATC
TATCTTTTCT CTTTACCAAT CAAGGAGTAC CAAATCATTG ATAAATTCCT
TAACCTCAAG GATGAAGTTA TGAAGATTGT TCCAGTTCAA AAGCAAACTC
GTGCTGGTCA ACGTACCCGT TTCAAGGCTT TCGTCGTTGT TGGTGATCAC
AACGGTCATG TAGGTCTCGG TGTTAAATGC GCTAAGGAAG TTGCCACCGC
CATTTCTGGT GCTATCGTTG CTGCCAAATT ATCAGTCATC CCAGTTCGTC
GTGGTTATTG GGGTAACAAA CTCGGTGCTC CACACACTGT CCCAACCAAA
GTCACTGGTA AATGCGGTTC CGTCGCTGTA CGTCTCGTTC CAGCCCCAAG
AGGTACTGGT ATCGTTGCTG CTCGTGTTCC AAAGAAATTA CTCCAATATG
CTGGTGTTGA TGATGTTTAC ACATCTTCAC GTGGTAAGAC CAGAACCATG
GGTAACTTTG TCATGGCCAC TTTCTTCGCC ATCACCAAGA CCTTTGCTTA
CTTAACCCCA GATCTTTGGA GAGAAGTCAA ATTAATCAAG ACTCCATACC
AAGAACACTC TGCCAAATTA TCCGAAAAAC AACAATAAAT CAATTTAATA
ATTTTTTACT
Translated Amino Acid Sequence VHC570
<All Frames>
fi*ss*TEYIKRSMADTTTAAQADQKPTRAFGAGRPQRGAGGAPQRGGPRPQRGGQGETK
SWTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLNLKDEVMKIVPVQKQTRAGQ
RTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTV
PTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMAT
FFAITKTFAYLTPDLWREVKLIKTPYQEHSAKLSEKQQ*inliify
Homology VHC570 vs CSM-cDNA
<more CSM info>
Sequences producing significant alignments: (bits) Value
VHC570 (VHC570Q) /CSM/VH/VHC5-C/VHC570Q.Seq.d/ 1705 0.0
VHC440 (VHC440Q) /CSM/VH/VHC4-B/VHC440Q.Seq.d/ 1661 0.0
SLE490 (SLE490Q) /CSM/SL/SLE4-D/SLE490Q.Seq.d/ 1645 0.0
AFO729 (AFO729Q) /CSM/AF/AFO7-B/AFO729Q.Seq.d/ 1374 0.0
SLA855 (SLA855Q) /CSM/SL/SLA8-C/SLA855Q.Seq.d/ 1368 0.0
VHN687 (VHN687Q) /CSM/VH/VHN6-D/VHN687Q.Seq.d/ 1360 0.0
VFE388 (VFE388Q) /CSM/VF/VFE3-D/VFE388Q.Seq.d/ 1360 0.0
FC-BD02 (FC-BD02Q) /CSM/FC/FC-BD/FC-BD02Q.Seq.d/ 1225 0.0
SLC152 (SLC152Q) /CSM/SL/SLC1-C/SLC152Q.Seq.d/ 1174 0.0
VFF647 (VFF647Q) /CSM/VF/VFF6-B/VFF647Q.Seq.d/ 1162 0.0
Homology VHC570 vs DNA
<more DNA info>
Sequences producing significant alignments: (bits) Value N
X56297|X56297.1 D.discoideum LLRep3 mRNA. 1582 0.0 1
EC761924|EC761924.1 PSE00000209 rw_mgpallid Polysphondylium ... 373 e-102 3
EC760561|EC760561.1 PSE00007289 rw_mgpallid Polysphondylium ... 325 1e-84 1
EC761077|EC761077.1 PSE00006667 rw_mgpallid Polysphondylium ... 258 6e-72 2
EC760770|EC760770.1 PSE00001406 rw_mgpallid Polysphondylium ... 206 2e-56 2
EC761820|EC761820.1 PSE00007415 rw_mgpallid Polysphondylium ... 178 3e-48 2
EC761207|EC761207.1 PSE00000771 rw_mgpallid Polysphondylium ... 178 3e-48 2
EH431996|EH431996.1 NPE00000628 Neocallimastix patriciarum Z... 145 6e-43 4
EC760562|EC760562.1 PSE00008019 rw_mgpallid Polysphondylium ... 143 1e-37 2
AL031798|AL031798.1 S.pombe chromosome III cosmid c576. 109 6e-35 4
Homology VHC570 vs Protein
<more Protein info>
Sequences producing significant alignments: (bits) Value
(P27685) RecName: Full=40S ribosomal protein S2; AltName: Full=P... 441 e-122
JN048932_1(JN048932|pid:none) Dictyostelium lacteum clone DL0215... 379 e-103
JN048898_1(JN048898|pid:none) Acytostelium subglobosum clone ADB... 363 6e-99
AY961548_1(AY961548|pid:none) Lysiphlebus testaceipes ribosomal ... 332 1e-89
AY085726_1(AY085726|pid:none) Arabidopsis thaliana clone 17415 m... 332 1e-89
EF146355_1(EF146355|pid:none) Populus trichocarpa clone WS0117_H... 331 3e-89
(Q9SCM3) RecName: Full=40S ribosomal protein S2-4; &AK228054_1(... 330 4e-89
AY088743_1(AY088743|pid:none) Arabidopsis thaliana clone 93867 m... 330 6e-89
AB008017_1(AB008017|pid:none) Arabidopsis thaliana RF12 mRNA, pa... 330 6e-89
(Q93VB8) RecName: Full=40S ribosomal protein S2-2; &AB076984_1(... 330 6e-89
Homology VHC570 vs Genome
<more Genome info>
<List of Series> <Series: VHC5-C> <Clone: VHC570> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Project Home