Dictyostelium discoideum cDNA Clone VHC468

Sequence VHC468

ACGTTTTATC TTCCATCCAC AAAATGTCTG CCAAAGCTGC CACCAAAAAC
GCTACTAAGG TTGCCGTCAA AGCACCAGAA GCAACTACAC CAGTTGAAAC
CAAAAAATCA AAGAAAGACA ATGTCATGAG AGGTCTCAGA ATTGAAAAGT
TAGTTCTCAA CATTTGTGTT GGTGAATCTG GTGATAGATT AGTTCGTGCT
GCTAAAGTAC TTGAACAATT AACTGGTCAA ACCCCAGTCT ACTCTAAAGC
TCGTTACACT GTCAGATCTT TCAACATTCG TCGTAATGAA CAAATCGCTG
CTCACGTCAC TGTCCGTGGT GAAAAAGCTG CTGAAATCTT AGAAAAAGGT
CTCAAAGTTA GAGAATTCGA ACTCCGTGCC CGTAACTTCT CAACCCAAGG
TTCATTTGGT TTTGGTATCC AAGAACACAT CGATTTAGGT ATTAAATACG
ATCCATCAAT CGGTATTTAC GGTATGGATT TCTTCGTCGT ACTTTCACGT
CCAGGTTTCC GTGTTGCTCA CAAAAAGAGA GCCGGTGCTA AAGTTGGTTT
CCAACANAAA ATCGGTAAAG AAGATGCCGT TAACTGGTTC AAAACCACTT
ATGATGGTAT TGTTATTGGT GGAAAGAAAT AAACAATTGT TCACACATAA
A--------- -ACGTTTTAT CTTCCATCCA CAAAATGTCT GCCAAAGCTG
CCACCAAAAA CGCTACTAAG GTTGCCGTCA AAGCACCAGA AGCAACTACA
CCAGTTGAAA CCAAAAAATC AAAGAAAGAC AATGTCATGA GAGGTCTCAG
AATTGAAAAG TTAGTTCTCA ACATTTGTGT TGGTGAATCT GGTGATAGAT
TAGTTCGTGC TGCTAAAGTA CTTGAACAAT TAACTGGTCA AACCCCAGTC
TACTCTAAAG CTCGTTACAC TGTCAGATCT TTCAACATTC GTCGTAATGA
ACAAATCGCT GCTCACGTCA CTGTCCGTGG TGAAAAAGCT GCTGAAATCT
TAGAAAAAGG TCTCAAAGTT AGAGAATTCG AACTCCGTGC CCGTAACTTC
TCAACCCAAG GTTCATTTGG TTTTGGTATC CAAGAACACA TCGATTTAGG
TATTAAATAC GATCCATCAA TCGGTATTTA CGGTATGGAT TTCTTCGTCG
TACTTTCACG TCCAGGTTTC CGTGTTGCTC ACAAAAAGAG AGCCGGTGCT
AAAGTTGGTT TCCAACATAA AATCGGTAAA GAAGATGCCG TTAACTGGTT
CAAAACCACT TATGATGGTA TTGTTATTGG GGAAAGAA

Translated Amino Acid Sequence VHC468

tfylpstkclpklppktllrlpskhqkqlhqlkpknqrktms*evselks*fstfvlvnl
vid*fvllkylnn*lvkpqstlklvtlsdlstfvvmnkslltslsvvkkllks*kkvskl
ensnsvpvtsqpkvhlvlvskntsi*VLNTIHQSVFTVWISSSYFHVQVSVLLTKREPVL
KLVSNXKSVKKMPLTGSKPLMMVLLLVERNKQLFTHK---

---VLSSIHKMSAKAATKNATKVAVKAPEATTPVETKKSKKDNVMRGLRIEKLVLNICVG
ESGDRLVRAAKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGL
KVREFELRARNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGFRVAHKKRA
GAKVGFQHKIGKEDAVNWFKTTYDGIVIGER

Homology VHC468 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHC468 (VHC468Q) /CSM/VH/VHC4-C/VHC468Q.Seq.d/                       2488   0.0
FC-AR12 (FC-AR12Q) /CSM/FC/FC-AR/FC-AR12Q.Seq.d/                     1247   0.0
FC-AE20 (FC-AE20Q) /CSM/FC/FC-AE/FC-AE20Q.Seq.d/                     1241   0.0
FC-AG19 (FC-AG19Q) /CSM/FC/FC-AG/FC-AG19Q.Seq.d/                     1239   0.0
VHH863 (VHH863Q) /CSM/VH/VHH8-C/VHH863Q.Seq.d/                       1223   0.0
VFF502 (VFF502Q) /CSM/VF/VFF5-A/VFF502Q.Seq.d/                       1193   0.0
FC-BL21 (FC-BL21Q) /CSM/FC/FC-BL/FC-BL21Q.Seq.d/                     1187   0.0
VFA578 (VFA578Q) /CSM/VF/VFA5-D/VFA578Q.Seq.d/                        977   0.0
VSG602 (VSG602Q) /CSM/VS/VSG6-A/VSG602Q.Seq.d/                        567   e-160
FC-IC1530 (FC-IC1530Q) /CSM/FC-IC/FC-IC1530Q.Seq.d/                   543   e-153

Homology VHC468 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


X15382|X15382.1 D.discoideum vegetative specific gene V18 ge...   444   0.0    3
DY888699|DY888699.1 CeleSEQ5922 Cunninghamella elegans pBlue...   101   7e-55  6
DY887908|DY887908.1 CeleSEQ4729 Cunninghamella elegans pBlue...   101   7e-55  6
DY892633|DY892633.1 CeleSEQ11218 Cunninghamella elegans pBlu...   101   1e-54  6
DY887925|DY887925.1 CeleSEQ4753 Cunninghamella elegans pBlue...   101   1e-52  5
DY887476|DY887476.1 CeleSEQ3825 Cunninghamella elegans pBlue...   101   7e-51  4
DY895556|DY895556.1 CeleSEQ15407 Cunninghamella elegans pBlu...    94   3e-50  6
EC762560|EC762560.1 PSE00006758 rw_mgpallid Polysphondylium ...    98   2e-49  4
DY887052|DY887052.1 CeleSEQ2922 Cunninghamella elegans pBlue...    78   5e-44  5
DY885127|DY885127.1 CeleSEQ321 Cunninghamella elegans pBlues...    78   1e-43  5

Homology VHC468 vs Protein

Sequences producing significant alignments:                      (bits) Value


(P16168) RecName: Full=60S ribosomal protein L11; AltName: Full=...   365   2e-99
EZ419774_1(EZ419774|pid:none) TSA: Cimex lectularius CL-4-24-44 ...   269   3e-70
AM049026_1(AM049026|pid:none) Curculio glandium mRNA for ribosom...   269   3e-70
BT127135_1(BT127135|pid:none) Dendroctonus ponderosae clone DPO0...   266   2e-69
EF639091_1(EF639091|pid:none) Triatoma infestans clone tin-445 r...   265   3e-69
AK340094_1(AK340094|pid:none) Acyrthosiphon pisum ACYPI008302 mR...   265   4e-69
AK339843_1(AK339843|pid:none) Acyrthosiphon pisum ACYPI004755 mR...   265   4e-69
EU045352_1(EU045352|pid:none) Phlebotomus papatasi 60S ribosomal...   265   4e-69
GU084276_1(GU084276|pid:none) Manduca sexta ribosomal protein L1...   265   4e-69
AB374946_1(AB374946|pid:none) Solea senegalensis RPL11 mRNA for ...   265   5e-69

Homology VHC468 vs Genome