<List of Series> <Series: VHC4-B> <Clone: VHC440> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Clone VHC440
Dictyostelium discoideum cDNA Project Home
Sequence VHC440
AGTCGTCATA AACAGAATAT ATAAAGAGAT CAATGGCTGA TACTACAACT
GCTGCTCAAG CCGATCAAAA ACCAACTCGT GCTTTTGGTG CTGGTCGTCC
ACAAAGAGGT GCTGGTGGTG CCCCACAAAG AGGTGGTCCA CGTCCACAAA
GAGGTGGTCA AGGTGAAACC AAATCATGGA CTCCAGTCAC CAAATTAGGT
CGTCTCGTTG CTCTTGGTTT AGTCGAGAAT ATCCACGAAA TCTATCTTTT
CTCTTTACCA ATCAAGGAGT ACCAAATCAT TGATAAATTC CTTAACCTCA
AGGATGAAGT TATGAAGATT GTTCCAGTTC AAAAGCAAAC TCGTGCTGGT
CAACGTACCC GTTTCAAGGC TTTCGTCGTT GTTGGTGATC ACAACGGTCA
TGTAGGTCTC GGTGTTAAAT GCGCTAAGGA AGTTGCCACC GCCATTTCTG
GTGCTATCGT TGCTGCCAAA TTATCAGTCA TCCCAGTTCG TCGTGGTTAT
TGGGGTAACA AACTCGGTGC TCCACACACT GTCCCAACCA AAGTCACTGG
TAAATGCGGT TCCGTCGCTG TACGTCTCGT TCCAGCCCCA AGAGGTACTG
GTATCGTTGC TGCTCGTGTT CCAAAGAAAT TACTCCAATA TGCTGGTGTT
GATGATGTTT ACACATCTTC ACGTGGTAAG ACCAGAACCA TGGGTAACTT
TGTCATGGCC ACTTTCTTCG CCATCACCAA GACCTTTGCT TACTTAACCC
CAGATCTTTG GAGAGAAGTC AAATTAATCA AGACTCCATA CCAAGAACAC
TCTGCCAAAT TATCCGAAAA ACAACAATAA ATCAATTTTA ATTAATTTTT
TAC
Translated Amino Acid Sequence VHC440
<All Frames>
ss*TEYIKRSMADTTTAAQADQKPTRAFGAGRPQRGAGGAPQRGGPRPQRGGQGETKSWT
PVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLNLKDEVMKIVPVQKQTRAGQRTR
FKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTK
VTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFA
ITKTFAYLTPDLWREVKLIKTPYQEHSAKLSEKQQ*infn*ff
Homology VHC440 vs CSM-cDNA
<more CSM info>
Sequences producing significant alignments: (bits) Value
VHC440 (VHC440Q) /CSM/VH/VHC4-B/VHC440Q.Seq.d/ 1691 0.0
SLE490 (SLE490Q) /CSM/SL/SLE4-D/SLE490Q.Seq.d/ 1673 0.0
VHC570 (VHC570Q) /CSM/VH/VHC5-C/VHC570Q.Seq.d/ 1661 0.0
AFO729 (AFO729Q) /CSM/AF/AFO7-B/AFO729Q.Seq.d/ 1374 0.0
SLA855 (SLA855Q) /CSM/SL/SLA8-C/SLA855Q.Seq.d/ 1368 0.0
VFE388 (VFE388Q) /CSM/VF/VFE3-D/VFE388Q.Seq.d/ 1362 0.0
VHN687 (VHN687Q) /CSM/VH/VHN6-D/VHN687Q.Seq.d/ 1360 0.0
FC-BD02 (FC-BD02Q) /CSM/FC/FC-BD/FC-BD02Q.Seq.d/ 1251 0.0
SLC152 (SLC152Q) /CSM/SL/SLC1-C/SLC152Q.Seq.d/ 1201 0.0
FC-AC19 (FC-AC19Q) /CSM/FC/FC-AC/FC-AC19Q.Seq.d/ 1189 0.0
Homology VHC440 vs DNA
<more DNA info>
Sequences producing significant alignments: (bits) Value N
X56297|X56297.1 D.discoideum LLRep3 mRNA. 1582 0.0 1
EC761924|EC761924.1 PSE00000209 rw_mgpallid Polysphondylium ... 373 e-102 3
EC760561|EC760561.1 PSE00007289 rw_mgpallid Polysphondylium ... 325 1e-84 1
EC761077|EC761077.1 PSE00006667 rw_mgpallid Polysphondylium ... 258 6e-72 2
EC760770|EC760770.1 PSE00001406 rw_mgpallid Polysphondylium ... 206 2e-56 2
EC761820|EC761820.1 PSE00007415 rw_mgpallid Polysphondylium ... 178 3e-48 2
EC761207|EC761207.1 PSE00000771 rw_mgpallid Polysphondylium ... 178 3e-48 2
EH431996|EH431996.1 NPE00000628 Neocallimastix patriciarum Z... 145 6e-43 4
EC760562|EC760562.1 PSE00008019 rw_mgpallid Polysphondylium ... 143 1e-37 2
AL031798|AL031798.1 S.pombe chromosome III cosmid c576. 109 5e-35 4
Homology VHC440 vs Protein
<more Protein info>
Sequences producing significant alignments: (bits) Value
(P27685) RecName: Full=40S ribosomal protein S2; AltName: Full=P... 441 e-122
JN048932_1(JN048932|pid:none) Dictyostelium lacteum clone DL0215... 379 e-103
JN048898_1(JN048898|pid:none) Acytostelium subglobosum clone ADB... 363 6e-99
AY961548_1(AY961548|pid:none) Lysiphlebus testaceipes ribosomal ... 332 1e-89
AY085726_1(AY085726|pid:none) Arabidopsis thaliana clone 17415 m... 332 1e-89
EF146355_1(EF146355|pid:none) Populus trichocarpa clone WS0117_H... 331 3e-89
(Q9SCM3) RecName: Full=40S ribosomal protein S2-4; &AK228054_1(... 330 4e-89
AY088743_1(AY088743|pid:none) Arabidopsis thaliana clone 93867 m... 330 6e-89
AB008017_1(AB008017|pid:none) Arabidopsis thaliana RF12 mRNA, pa... 330 6e-89
(Q93VB8) RecName: Full=40S ribosomal protein S2-2; &AB076984_1(... 330 6e-89
Homology VHC440 vs Genome
<more Genome info>
<List of Series> <Series: VHC4-B> <Clone: VHC440> <SEQ> <Translated> <CSM> <DNA> <Protein> <Genome> <PSORT> <MOTIF>
Dictyostelium discoideum cDNA Project Home