Dictyostelium discoideum cDNA Clone VHC289

Sequence VHC289

ATAGTCCTGA TTATTACATC TTTTTAAAAC AAAAATGTTT GTTGCTAGAA
GATTATCTAA AAACATCACA CAAATTAGCA AAACTGCAGT TAAAACCTCA
GTTCGTGCTG TCCCAGTTAG AGGTTTCAAA ACTACTTCAG TTAACCAAGC
CGCAGCACCA GCACCAAAAA CTTCACAAGA AAAAGAATAC TTTGAAAAGA
ATAAGAGTCT TTTAGATAAA GAATCAAATG AAGAATCAAC TGAAGTTGAT
TATTCAAAAT TAAACGAAAA TCAAGGTGTT GTACATCAAG TAATTGGTGC
CGTCGTTGAT GTTTACTTCC CACACGGTAA ATTACCATAC ATCAATGATG
CTTTAATTGT AGATGATTTC CAAGCTGAAA ATGTCGAAAA AGTAATTGAA
GATCTTAACA ACCCATCTTT AAAGGGTAAA ATCGATTTCA ACAATGTTCC
AATTTCAAAC ATTAAATTAG TTTTAGAAGT TGCTCAACAT TTAGGTGATG
GTATCGTTCG TTGTGTCGCT CTCGATATTA CTGATGGTTT AGGTCGTGGT
GCACTCGTCC TCAACACTGG TTCCCCATTG ATGGTTCCAG TCGGTCAAGC
TACCCTTGGT CGTATTATGA ACGTTATTGG TGAACCAATC GATGGTT---
-------CCA GCTGATGATT TGACTGATCC AGCCCCAGCC ACTACATTTG
CACATCTTGA TGCCACCACT GTACTTTCTC GTGCCATCTC TGAATTGGGT
ATCTATCCAT GTGTCGATCC ATTAGATTCA ACNTCATTGA TGATGGATCC
AAATATTATT GGTGTTGAAC ATTACAAAGT TGCCACCGAT GTACAAAAGA
TCCTCCAAGA ATATAAATCA CTTCAAGATA TTATTGCCAT TTTAGGTATG
GATGATTTAT CTGAAGACCA AAAAGCAACT GTATTCCGTG CTCGTAAGAT
TCAACGTTTC TTATCACAAC CATTCGAAGT TGCCCACGCC TTCACCAATA
TGGAAGGTAG ATTCGTTAAA CTCTCCGACT CTATCAAAGC CTTCAAAGGT
ATCCTCGAAG GTAAATACGA TCATCTCCCA GAAGCTGCCT TCTATATGGT
TGGTGGTATC GAAGATGTCG AAATTAAAGC TGCTAAACTC TTAGAATCCG
CTGGTAAAGA AGAAAAGAAA ACCACCACTA CCTCCACCAC TGGTCAAGTC
AAAGAAGAAA CTGTCAGAGA AAAAGTTACC AGACTCGTCG ATGAAGCTTA
CAATGCTAAA GTCAAGAAAT TAAAGGAATA TGGTGCCTCA ACTGCTCACC
TTGAAGAATT ACGTGCTCAA TATGAAAAGA ACTTTGAATC TGAAATCAGT
CAATTAGAAG TTTTATTAAA AAAATAAATT ACTTCCAAAA CTAAAAANAA
TTATATAATA TTCAAATA

Translated Amino Acid Sequence VHC289

*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQE
KEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIV
DDFQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDGL
GRGALVLNTGSPLMVPVGQATLGRIMNVIGEPIDG---

---PADDLTDPAPATTFAHLDATTVLSRAISELGIYPCVDPLDSTSLMMDPNIIGVEHYK
VATDVQKILQEYKSLQDIIAILGMDDLSEDQKATVFRARKIQRFLSQPFEVAHAFTNMEG
RFVKLSDSIKAFKGILEGKYDHLPEAAFYMVGGIEDVEIKAAKLLESAGKEEKKTTTTST
TGQVKEETVREKVTRLVDEAYNAKVKKLKEYGASTAHLEELRAQYEKNFESEISQLEVLL
KK*itsktkxnyiifk

Homology VHC289 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VHC289 (VHC289Q) /CSM/VH/VHC2-D/VHC289Q.Seq.d/                       2656   0.0
VHO660 (VHO660Q) /CSM/VH/VHO6-C/VHO660Q.Seq.d/                       1413   0.0
VHO862 (VHO862Q) /CSM/VH/VHO8-C/VHO862Q.Seq.d/                       1402   0.0
VHA544 (VHA544Q) /CSM/VH/VHA5-B/VHA544Q.Seq.d/                       1402   0.0
AHF618 (AHF618Q) /CSM/AH/AHF6-A/AHF618Q.Seq.d/                       1402   0.0
AHB641 (AHB641Q) /CSM/AH/AHB6-B/AHB641Q.Seq.d/                       1398   0.0
VHA449 (VHA449Q) /CSM/VH/VHA4-C/VHA449Q.Seq.d/                       1394   0.0
VHI695 (VHI695Q) /CSM/VH/VHI6-D/VHI695Q.Seq.d/                       1388   0.0
VHE445 (VHE445Q) /CSM/VH/VHE4-B/VHE445Q.Seq.d/                       1388   0.0
VHK118 (VHK118Q) /CSM/VH/VHK1-A/VHK118Q.Seq.d/                       1386   0.0

Homology VHC289 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AR548202|AR548202.1 Sequence 3333 from patent US 6747137.          66   9e-44  8
DV184533|DV184533.1 CT036_H07_CT036_3700_90.ab1 C. tentans t...    84   3e-40  4
AX110914|AX110914.1 Sequence 1647 from Patent WO0123604.           92   6e-37  5
AX109728|AX109728.1 Sequence 461 from Patent WO0123604.            58   5e-33  7
U37764|U37764.1 Kluyveromyces lactis F1 ATPase beta subunit ...    58   1e-32  6
AX109755|AX109755.1 Sequence 488 from Patent WO0123604.            66   2e-32  6
AX109756|AX109756.1 Sequence 489 from Patent WO0123604.            66   2e-32  6
AB104883|AB104883.1 Zygosaccharomyces rouxii ZrATP2 gene for...    62   5e-31  6
EH012423|EH012423.1 USDA-FP_185325 Lysiphlebus testaceipes a...   113   1e-30  2
BQ090955|BQ090955.1 ku22f10.y1 Strongyloides ratti L3 adult ...    84   8e-30  3

Homology VHC289 vs Protein

Sequences producing significant alignments:                      (bits) Value


BT127859_1(BT127859|pid:none) Dendroctonus ponderosae clone DPO1...   218   5e-55
(P72247) RecName: Full=ATP synthase subunit beta;          EC=3....   218   8e-55
AK159737_1(AK159737|pid:none) Mus musculus osteoclast-like cell ...   218   8e-55
GN102155_1(GN102155|pid:none) Sequence 6936 from Patent WO200903...   217   1e-54
(Q5ZLC5) RecName: Full=ATP synthase subunit beta, mitochondrial;...   217   1e-54
(Q162S9) RecName: Full=ATP synthase subunit beta;          EC=3....   217   1e-54
(P38482) RecName: Full=ATP synthase subunit beta, mitochondrial;...   217   1e-54
BC067388_1(BC067388|pid:none) Xenopus tropicalis ATP synthase, H...   216   2e-54
AK151081_1(AK151081|pid:none) Mus musculus bone marrow macrophag...   216   2e-54
BC037127_1(BC037127|pid:none) Mus musculus ATP synthase, H+ tran...   216   2e-54

Homology VHC289 vs Genome