Homology VFM870 vs DNA
Query= VFM870 (VFM870Q) /CSM/VF/VFM8-C/VFM870Q.Seq.d/
(1460 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ435285) Dictyostelium discoideum cDNA clone:ddv26l18, 3' ... 938 0.0 2
(BJ435476) Dictyostelium discoideum cDNA clone:ddv27b07, 3' ... 906 0.0 2
(BJ432507) Dictyostelium discoideum cDNA clone:ddv18k23, 3' ... 783 0.0 3
(BJ432027) Dictyostelium discoideum cDNA clone:ddv17j11, 3' ... 783 0.0 4
(BJ376445) Dictyostelium discoideum cDNA clone:ddc28f17, 3' ... 823 0.0 2
(AU039683) Dictyostelium discoideum slug cDNA, clone SLG177. 924 0.0 2
(BJ400498) Dictyostelium discoideum cDNA clone:dds13c18, 3' ... 777 0.0 3
(C89896) Dictyostelium discoideum slug cDNA, clone SSG591. 924 0.0 2
(AU052429) Dictyostelium discoideum slug cDNA, clone SLD303. 924 0.0 1
(BJ416513) Dictyostelium discoideum cDNA clone:ddv26l18, 5' ... 444 0.0 4
(AU061810) Dictyostelium discoideum slug cDNA, clone SLG177. 434 0.0 4
(BJ414356) Dictyostelium discoideum cDNA clone:ddv18k23, 5' ... 444 0.0 7
(BJ416774) Dictyostelium discoideum cDNA clone:ddv27b07, 5' ... 444 0.0 4
(BJ413910) Dictyostelium discoideum cDNA clone:ddv17j11, 5' ... 436 e-175 6
(BJ363795) Dictyostelium discoideum cDNA clone:ddc28f17, 5' ... 444 e-128 5
(AU073294) Dictyostelium discoideum slug cDNA, clone SSG591. 287 2e-75 2
(EJ201163) 1092344299968 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.006 3
(AU272194) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 48 0.031 2
(AU272193) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 48 0.031 2
(AU272192) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 48 0.031 2
(AU271385) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 48 0.031 2
(AU271383) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 48 0.031 2
(AU271625) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 48 0.031 2
(AU272191) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 48 0.033 2
(BJ437635) Dictyostelium discoideum cDNA clone:ddv34j23, 3' ... 48 0.060 2
(ER218949) 1095525021197 Global-Ocean-Sampling_GS-33-01-01-1... 52 0.062 1
(AM467185) Vitis vinifera contig VV78X270036.7, whole genome... 50 0.24 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 50 0.24 1
(AC179107) Strongylocentrotus purpuratus clone R3-4011E22, W... 50 0.24 1
(EG799065) EST_ssal_evd_55942 ssalevd thymus Salmo salar cDN... 34 0.58 3
(EG824658) EST_ssal_evd_26173 ssalevd thymus Salmo salar cDN... 34 0.72 3
(GM963355) Sequence 52 from Patent WO2008142167. 48 0.97 1
(GM963354) Sequence 51 from Patent WO2008142167. 48 0.97 1
(GM963308) Sequence 5 from Patent WO2008142167. 48 0.97 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 48 0.97 1
(AC131378) Strongylocentrotus purpuratus clone Sp117A3, *** ... 48 0.97 1
(AC181345) Strongylocentrotus purpuratus clone R3-40H23, WOR... 48 0.97 1
(AC178984) Strongylocentrotus purpuratus clone R3-1108M19, W... 48 0.97 1
(AC168473) Strongylocentrotus purpuratus clone R3-3121F19, W... 48 0.97 1
(AL186554) Tetraodon nigroviridis genome survey sequence T7 ... 48 0.97 1
(EL423080) CHCM2658.b1_D18.ab1 CHC(LMS) Texas blueweed Helia... 48 0.97 1
(AU272097) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 48 0.97 1
(AU271626) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 48 0.97 1
(AU061131) Dictyostelium discoideum slug cDNA, clone SLD323. 48 0.97 1
(BJ415009) Dictyostelium discoideum cDNA clone:ddv21l01, 5' ... 48 0.97 1
(BX318968) AGENAE Rainbow trout multi-tissues - normalized +... 34 1.5 3
(FE259915) CAPH7982.fwd CAPH Naegleria gruberi amoeba stage ... 36 2.6 2
(BU652316) 1112099B12.y1 C. reinhardtii CC-1690 (mt+), CC-16... 32 2.6 2
(FE256470) CAPH6132.rev CAPH Naegleria gruberi amoeba stage ... 36 3.3 2
(FE267616) CAZO6232.fwd CAZO Naegleria gruberi Flagellate St... 36 3.3 2
(FE267615) CAZO6232.rev CAZO Naegleria gruberi Flagellate St... 36 3.3 2
(FE259914) CAPH7982.rev CAPH Naegleria gruberi amoeba stage ... 36 3.3 2
(FE257729) CAPH6776.rev CAPH Naegleria gruberi amoeba stage ... 36 3.3 2
(FE257091) CAPH6444.rev CAPH Naegleria gruberi amoeba stage ... 36 3.3 2
(FE251972) CAPH3761.rev CAPH Naegleria gruberi amoeba stage ... 36 3.3 2
(FE248122) CAPH1499.rev CAPH Naegleria gruberi amoeba stage ... 36 3.3 2
(FE259518) CAPH7741.rev CAPH Naegleria gruberi amoeba stage ... 36 3.4 2
(FE257092) CAPH6444.fwd CAPH Naegleria gruberi amoeba stage ... 36 3.4 2
(FE256471) CAPH6132.fwd CAPH Naegleria gruberi amoeba stage ... 36 3.4 2
(FE258406) CAPH713.rev CAPH Naegleria gruberi amoeba stage N... 36 3.4 2
(FE258407) CAPH713.fwd CAPH Naegleria gruberi amoeba stage N... 36 3.4 2
(FE253947) CAPH4803.rev CAPH Naegleria gruberi amoeba stage ... 36 3.4 2
(FE253948) CAPH4803.fwd CAPH Naegleria gruberi amoeba stage ... 36 3.4 2
(FE248123) CAPH1499.fwd CAPH Naegleria gruberi amoeba stage ... 36 3.4 2
(FE257730) CAPH6776.fwd CAPH Naegleria gruberi amoeba stage ... 36 3.5 2
(FE251973) CAPH3761.fwd CAPH Naegleria gruberi amoeba stage ... 36 3.5 2
(FE257243) CAPH6525.fwd CAPH Naegleria gruberi amoeba stage ... 36 3.6 2
(AL031347) Human DNA sequence from clone RP4-596H12 on chrom... 46 3.8 1
(AC020734) Homo sapiens BAC clone RP11-665I14 from 4, comple... 46 3.8 1
(AC041018) Homo sapiens chromosome 4 clone RP11-478O20 map 4... 46 3.8 1
(EJ956493) 1093018975225 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.8 1
(EI752525) CHORI520R123O21TF BAC library from the breast cel... 46 3.8 1
(DX567272) MUGQ_CH252P043K13Sp6_AV933_005 CHORI-252 Vervet M... 46 3.8 1
(CU403023) Eucalyptus gunnii EST from cold-acclimated leaves... 46 3.8 1
(BY939007) Bombyx mori cDNA, clone:E_FL_e100_19N01_F_0, 5' e... 46 3.8 1
(BG386672) 602454932F1 NIH_MGC_15 Homo sapiens cDNA clone IM... 46 3.8 1
(BI556463) 603237209F1 NCI_CGAP_Mam3 Mus musculus cDNA clone... 42 4.0 2
(EJ698882) 1092956028829 Global-Ocean-Sampling_GS-30-02-01-1... 40 5.0 2
(AC021206) Homo sapiens chromosome 1 clone RP11-184E11, WORK... 32 7.0 2
(AL137793) Human DNA sequence from clone RP5-1065P14 on chro... 32 7.1 2
(DU690918) Bst023448 lambda03 Boechera stricta genomic clone... 32 7.3 3
>(BJ435285) Dictyostelium discoideum cDNA clone:ddv26l18, 3' end,
single read.
Length = 670
Score = 938 bits (473), Expect(2) = 0.0
Identities = 476/476 (100%)
Strand = Plus / Minus
Query: 985 tctcacccaaatggttggaccgatgttggtcaattccttttgggtttggcagaaggttta 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tctcacccaaatggttggaccgatgttggtcaattccttttgggtttggcagaaggttta 417
Query: 1045 gtttcaactgttgcatcaaatactaaactttgtttccaaagtgttggttcatctatcact 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtttcaactgttgcatcaaatactaaactttgtttccaaagtgttggttcatctatcact 357
Query: 1105 gatttcgaaaatgcattccaattaattgattcaggtttttcaagactttcaaaaccatta 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gatttcgaaaatgcattccaattaattgattcaggtttttcaagactttcaaaaccatta 297
Query: 1165 attgaacaaggtttaatggatttaggtagtggtttactcgaagttgctattgcttttgaa 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attgaacaaggtttaatggatttaggtagtggtttactcgaagttgctattgcttttgaa 237
Query: 1225 acttgtaatgttcaaaatctcgctagtgaaattaaagcacttgctacaaatatagaaagt 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 acttgtaatgttcaaaatctcgctagtgaaattaaagcacttgctacaaatatagaaagt 177
Query: 1285 ggtgaacttggtatcctcgaagtaattgtcaaagaaaccattaacattttccataatggt 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggtgaacttggtatcctcgaagtaattgtcaaagaaaccattaacattttccataatggt 117
Query: 1345 aatcaacttaccactgaattcaaattaacaatctctgattacaagagtcaaaattacttg 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aatcaacttaccactgaattcaaattaacaatctctgattacaagagtcaaaattacttg 57
Query: 1405 ggtatgggttataatattggtggtatcgtcggtattttacttaaagnattaaaata 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ggtatgggttataatattggtggtatcgtcggtattttacttaaagnattaaaata 1
Score = 287 bits (145), Expect(2) = 0.0
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 791 cagattcaatgagtggatcagattcaatgagtggatcagattcaatgagtggatcatcat 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cagattcaatgagtggatcagattcaatgagtggatcagattcaatgagtggatcatcat 611
Query: 851 ttacaggtggaaatagtggtggtagtacatcaactggttcaggtagttattcaggtaatc 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttacaggtggaaatagtggtggtagtacatcaactggttcaggtagttattcaggtaatc 551
Query: 911 catcattaactggttcatcagaata 935
|||||||||||||||||||||||||
Sbjct: 550 catcattaactggttcatcagaata 526
Score = 75.8 bits (38), Expect = 4e-09
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 791 cagattcaatgagtggatcagattcaatgagtggatca 828
||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cagattcaatgagtggatcagattcaatgagtggatca 615
Score = 75.8 bits (38), Expect = 4e-09
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 809 cagattcaatgagtggatcagattcaatgagtggatca 846
||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cagattcaatgagtggatcagattcaatgagtggatca 633
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,262,675,081
Number of extensions: 76909760
Number of successful extensions: 5600258
Number of sequences better than 10.0: 81
Length of query: 1460
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1436
Effective length of database: 99,340,224,878
Effective search space: 142652562924808
Effective search space used: 142652562924808
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home