Homology VFM702 vs Protein

Query= VFM702 (VFM702Q) /CSM/VF/VFM7-A/VFM702Q.Seq.d/
         (1041 letters)

Database: nrp_B
           5,349,213 sequences; 1,732,582,204 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       265   3e-84
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   261   2e-83
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   121   4e-29
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    87   2e-15
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...    61   9e-08
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    51   1e-04
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    50   2e-04
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    45   0.009
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    45   0.009
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...    44   0.019
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...    42   0.043
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso...    40   0.28
AP008215_740(AP008215|pid:none) Oryza sativa (japonica cultivar-...    38   0.81
AB475006_1(AB475006|pid:none) Oryza sativa Japonica Group DN1 ge...    38   0.81
FJ501956_1(FJ501956|pid:none) Oryza sativa Indica Group keratin ...    38   0.81
FJ554569_1(FJ554569|pid:none) Oryza sativa Japonica Group cultiv...    38   0.81
T27318(T27318)hypothetical protein Y69H2.3a - Caenorhabditis ele...    37   1.4
Z98877_13(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   1.4
T27319(T27319)hypothetical protein Y69H2.3b - Caenorhabditis ele...    37   1.4
FJ644567_1(FJ644567|pid:none) Fenneropenaeus merguiensis thrombo...    37   1.4
Z98877_11(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   1.4
Z98877_12(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   1.4
FN357293_49(FN357293|pid:none) Schistosoma mansoni genome sequen...    36   3.1
AM494959_45(AM494959|pid:none) Leishmania braziliensis chromosom...    35   6.8
FR798997_46(FR798997|pid:none) Leishmania braziliensis MHOM/BR/7...    35   6.8
BC140725_1(BC140725|pid:none) Homo sapiens keratin associated pr...    27   8.9
Z98877_9(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, comp...    35   8.9

>(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;
          Length = 555

 Score =  265 bits (676), Expect(2) = 3e-84
 Identities = 113/118 (95%), Positives = 114/118 (96%)
 Frame = -2

Query: 1040 CKSXRSCAFLPFVSC*GKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFV 861
            CKS RSCA+LPFVSC GKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFV
Sbjct: 38   CKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFV 97

Query: 860  PYHSPNTTTCESLXCXARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCP 687
            PYHSPNTTTCESL C ARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCP
Sbjct: 98   PYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCP 155

 Score = 72.8 bits (177), Expect(2) = 3e-84
 Identities = 36/82 (43%), Positives = 44/82 (53%), Gaps = 20/82 (24%)
 Frame = -3

Query: 685 QGFYXEEQGGSACCVPHHDGCGNIQXXXXXVF-------------------PQLCKVTQC 563
           +GFY EEQGGSACCVPHHDGCGNIQ                             C+   C
Sbjct: 156 EGFYCEEQGGSACCVPHHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHC 215

Query: 562 PTDFSCKMIRGNPTCIK-ARPP 500
           P  +SC++I+G  TC++ ARPP
Sbjct: 216 PHGYSCRVIKGCATCVRDARPP 237

 Score =  153 bits (386), Expect = 2e-35
 Identities = 67/67 (100%), Positives = 67/67 (100%)
 Frame = -3

Query: 595 VFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPS 416
           VFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPS
Sbjct: 358 VFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPS 417

Query: 415 NCTNTRF 395
           NCTNTRF
Sbjct: 418 NCTNTRF 424

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,113,176,324
Number of extensions: 40821836
Number of successful extensions: 125155
Number of sequences better than 10.0: 27
Number of HSP's gapped: 124948
Number of HSP's successfully gapped: 38
Length of query: 347
Length of database: 1,732,582,204
Length adjustment: 133
Effective length of query: 214
Effective length of database: 1,021,136,875
Effective search space: 218523291250
Effective search space used: 218523291250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)




Dictyostelium discoideum cDNA Project Home