Dictyostelium discoideum cDNA Clone VFM557

Sequence VFM557

ATGACATTTT ACGCTATTGG TTTGCGTTTA AAGTGTAATG ATTAATAGGG
ATGGATGGGG GTGTTCATAT TGGTGGGCGA GAGGTGAAAT TCGTTGACCC
TATCAAGATG AACTTCTGCG AAAGCATTCA CCAAATACTT CCCCATTAAT
CAAGAACGAA AGTTTGGGGA TCGAAGACGA TCAGATACCG TCGTAGTCCA
AACTATAAAC TATGTCGACC AGGGATCGGT TAAAATTTTT TCAAAATTTA
ATCGGCACCT TGTGAGAAAT CATGAGTGTT TAGATTCCGG GGGGAGTATG
GTCGCAAGTC TGAAACTTAA AGGAATTGAC GGAAGGGCAC ACAATGGAGT
GGAGCCTGCG GCTTAATTTG ACTCAACTCG GGAAAACTTA CCAAGCTAAG
ATATAGTAAG GATTGACAGA CTAAAAGATC TTTCATGATT CTATAAGTGG
TGGTGCATGG TCGTTCTTAG TTGGTGGAGC GATTTGTCTG GTCAATTCCG
ATAACGGACG AGACCTCGAC CTGCTAACTA GTAGTATTTA TTAGTCGATA
TAGACGATAG CTTTTCTGGG GTTTGGAATG ATTTCGGTCA TCTCCTGCTT
CAAGGAGTGT GTAGTCTGAC TCGATAGGTA CGAATTAAAA CTTCTTAGAG
GGACTACCTG CCTCAAGCAG GCGGAAGTCC GAGGCAATAA CAGGTCTGTG
ATGCCCTTAG ATACCTTGGG CCGCACGCGC GCTACAATGT AGGAAACAAA
AAGGCTCCTG GTCCGGAAGG ATTGGGTAAT CATTTGAATT TCCTACGTAA
CTGGGCTTGA TCTTTGTAAT TATTGATCAT AAACGAGGAA TTCCTTGTAA
GCGTAAGTCA TTACCTTATG CTGAATATGT CCCTGCCCTT TGTACACACC
GCCCGTCGCT CCTACCGATC GAATGATACG GTAAAGTTAA CGGATCGTTT
TATCTGTGGC AACACTGATA TAAATTAAAA GTTATTTAAA TCTCATTGTT
TAGAGGAAGG AGAAGTCGTA ACAAGGTATC CGTAGGTGAA CCTGCGGATG
GATCATTTTT TATCTTAATA TCATAAACTT TATGTTTTTT TGGATAATGG
AACTGCTTGC GTATAAAGAA ATTAGGCTTT TTAATTAAGG TTTAAGNAGT
AAGTGGNCTT GTCAGATTT

Translated Amino Acid Sequence VFM557

mtfyaiglrlkcnd**gwmgvfilvger*nsltlsr*TSAKAFTKYFPINQERKFGDRRR
SDTVVVQTINYVDQGSVKIFSKFNRHLVRNHECLDSGGSMVASLKLKGIDGRAHNGVEPA
A*fdstrenlps*divridrlkdls*fykwwcmvvlswwsdlsgqfr*rtrprpan**yl
lvdiddsfsgvwndfghlllqgvcsltr*vrikts*rdylpqaggsprq*qvcdalrylg
pharynvgnkkapgpeglgnhlnflrnwa*sl*lliineeflvsvshylmlnmslpfvht
arrsyrsndtvkltdrficgntdin*klfkshcleegevvtryp*vnlrmdhfls*yhkl
yvfldngtacv*rn*af*lrfkx*vxlsd

Homology VFM557 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFM557 (VFM557Q) /CSM/VF/VFM5-C/VFM557Q.Seq.d/                       2264   0.0
SFE142 (SFE142Q) /CSM/SF/SFE1-B/SFE142Q.Seq.d/                       1941   0.0
AHO642 (AHO642Q) /CSM/AH/AHO6-B/AHO642Q.Seq.d/                       1505   0.0
VHJ647 (VHJ647Q) /CSM/VH/VHJ6-B/VHJ647Q.Seq.d/                       1481   0.0
VHA586 (VHA586Q) /CSM/VH/VHA5-D/VHA586Q.Seq.d/                       1445   0.0
FC-AG24 (FC-AG24Q) /CSM/FC/FC-AG/FC-AG24Q.Seq.d/                     1405   0.0
VHK334 (VHK334Q) /CSM/VH/VHK3-B/VHK334Q.Seq.d/                       1342   0.0
VFO216 (VFO216Q) /CSM/VF/VFO2-A/VFO216Q.Seq.d/                       1340   0.0
VFG294 (VFG294Q) /CSM/VF/VFG2-D/VFG294Q.Seq.d/                       1340   0.0
VHE244 (VHE244Q) /CSM/VH/VHE2-B/VHE244Q.Seq.d/                       1326   0.0

Homology VFM557 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AY171066) Dictyostelium discoideum extrachromosomal palindr...  2149   0.0    2
(X00134) Dictyostelium discoideum 17S rRNA sequence.             2099   0.0    1
(K02641) Slime mold (D.discoideum) 17S small subunit ribosom...  2099   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  2077   0.0    2
(AM168071) Dictyostelium discoideum 18S rRNA gene, isolate NC4.  2076   0.0    1
(AM168039) Dictyostelium discoideum 18S rRNA gene, isolate V34.  2044   0.0    1
(AM168038) Dictyostelium dimigraformum 18S rRNA gene, isolat...  2044   0.0    1
(AM168040) Dictyostelium discoideum 18S rRNA gene, isolate 9...  2038   0.0    1
(AM168033) Dictyostelium citrinum 18S rRNA gene, isolate OH494.  2020   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1491   0.0    3

Homology VFM557 vs Protein

Sequences producing significant alignments:                      (bits) Value


AF421549_1(AF421549|pid:none) Gallus gallus CDH1-D mRNA, partial...    95   8e-18
BT055295_1(BT055295|pid:none) Zea mays full-length cDNA clone ZM...    62   8e-08
FP929128_286(FP929128|pid:none) Leptosphaeria maculans v23.1.3 l...    61   1e-07
AM462492_6(AM462492|pid:none) Vitis vinifera contig VV78X177628....    60   2e-07
AB220473_1(AB220473|pid:none) Macaca fascicularis mRNA, clone Qf...    58   1e-06
AY914930_1(AY914930|pid:none) Schistosoma japonicum SJCHGC01014 ...    53   4e-05
EU955514_1(EU955514|pid:none) Zea mays clone 1535262 hypothetica...    50   2e-04
AL844509_687(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    50   3e-04
FP929128_285(FP929128|pid:none) Leptosphaeria maculans v23.1.3 l...    49   5e-04
AE014843_35(AE014843|pid:none) Plasmodium falciparum 3D7 chromos...    34   0.003

Homology VFM557 vs Genome