Homology VFM284 vs Protein
Query= VFM284 (VFM284Q) /CSM/VF/VFM2-D/VFM284Q.Seq.d/
(934 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC147178_12(AC147178|pid:none) Medicago truncatula clone mth2-14... 47 0.001
AC147178_11(AC147178|pid:none) Medicago truncatula clone mth2-14... 44 0.013
AB023033_7(AB023033|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.048
AM424178_2(AM424178|pid:none) Vitis vinifera contig VV78X111729.... 42 0.062
AL844509_312(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.081
AK364133_1(AK364133|pid:none) Hordeum vulgare subsp. vulgare mRN... 41 0.081
CP002416_1668(CP002416|pid:none) Clostridium thermocellum DSM 13... 39 0.40
CP000581_222(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 38 0.69
EF517792_9(EF517792|pid:none) Capsicum frutescens BAC 215H17, co... 38 0.90
EF517794_9(EF517794|pid:none) Solanum bulbocastanum BAC 27I18, c... 38 0.90
AY722927_1(AY722927|pid:none) Borrelia garinii PBi variable plas... 37 1.2
EF517793_3(EF517793|pid:none) Petunia integrifolia subsp. inflat... 37 1.5
CP001357_432(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 37 1.5
FR823385_229(FR823385|pid:none) Neospora caninum Liverpool compl... 37 2.0
AY710429_16(AY710429|pid:none) Cryptococcus gattii strain E566 M... 37 2.0
AF542529_27(AF542529|pid:none) Cryptococcus neoformans var. grub... 37 2.0
(Q8I4R2) RecName: Full=Reticulocyte-binding protein 3; Flags: Pr... 37 2.0
CP002108_329(CP002108|pid:none) Mycoplasma leachii PG50 clone MU... 36 2.6
CP001733_1395(CP001733|pid:none) Aggregatibacter actinomycetemco... 36 2.6
CP002394_2761(CP002394|pid:none) Bacillus cellulosilyticus DSM 2... 36 2.6
HE576755_73(HE576755|pid:none) Naumovozyma castellii CBS 4309 co... 36 3.4
CP001719_1122(CP001719|pid:none) Methanobrevibacter ruminantium ... 36 3.4
CP000123_305(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 36 3.4
GU474866_4(GU474866|pid:none) Uncultured beta proteobacterium HF... 36 3.4
CP000609_1723(CP000609|pid:none) Methanococcus maripaludis C5, c... 36 3.4
AL844505_191(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 36 3.4
AE017344_579(AE017344|pid:none) Cryptococcus neoformans var. neo... 35 4.5
CP002728_1071(CP002728|pid:none) Tepidanaerobacter sp. Re1, comp... 35 4.5
AM295250_1158(AM295250|pid:none) Staphylococcus carnosus subsp. ... 35 5.8
BC072054_1(BC072054|pid:none) Xenopus laevis hypothetical protei... 35 5.8
AP009608_711(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ... 35 5.8
AP012202_1254(AP012202|pid:none) Candidatus Arthromitus sp. SFB-... 35 5.8
AY710430_8(AY710430|pid:none) Cryptococcus gattii strain WM276 M... 35 5.8
AE015929_1276(AE015929|pid:none) Staphylococcus epidermidis ATCC... 35 7.6
AK159723_1(AK159723|pid:none) Mus musculus osteoclast-like cell ... 35 7.6
CP001056_482(CP001056|pid:none) Clostridium botulinum B str. Ekl... 35 7.6
BX950229_1665(BX950229|pid:none) Methanococcus maripaludis strai... 35 7.6
BT081308_1(BT081308|pid:none) Caligus clemensi clone ccle-evs-50... 35 7.6
(Q9CZT4) RecName: Full=DNA-directed RNA polymerase III subunit R... 35 7.6
CP002105_975(CP002105|pid:none) Acetohalobium arabaticum DSM 550... 35 7.6
AK146279_1(AK146279|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 35 7.6
BT080614_1(BT080614|pid:none) Caligus clemensi clone ccle-evs-50... 35 7.6
AL844506_99(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 34 9.9
CP002913_1795(CP002913|pid:none) Methanococcus maripaludis X1, c... 34 9.9
AE015927_1998(AE015927|pid:none) Clostridium tetani E88, complet... 34 9.9
AK222789_1(AK222789|pid:none) Homo sapiens mRNA for polymerase (... 34 9.9
CP000361_914(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 34 9.9
(Q9NVU0) RecName: Full=DNA-directed RNA polymerase III subunit R... 34 9.9
CP002163_166(CP002163|pid:none) Candidatus Sulcia muelleri CARI,... 34 9.9
AP009049_2(AP009049|pid:none) Clostridium kluyveri NBRC 12016 DN... 34 9.9
AB040885_1(AB040885|pid:none) Homo sapiens mRNA for KIAA1452 pro... 34 9.9
AP009049_3196(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 34 9.9
HE580270_289(HE580270|pid:none) Naumovozyma dairenensis CBS 421 ... 34 9.9
>AC147178_12(AC147178|pid:none) Medicago truncatula clone
mth2-142i4, complete sequence.
Length = 434
Score = 47.0 bits (110), Expect = 0.001
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +3
Query: 690 LKKMATIVRYSYVLKTTGNQKVDKYRDIILEAFNKSGG---LKKDDIINLLREKMDTNYV 860
L ++A + YVLK+ N D +RD++++ SG LKK +I+ R K+
Sbjct: 349 LGEVACDIHGCYVLKSAQN---DPFRDVVIDMLRGSGPNGKLKKAEILEAARRKLGR--- 402
Query: 861 EIPQNIFIQVLTELAEAKGKVWVL 932
++P N +I+ ++EL +KG WVL
Sbjct: 403 DVPNNEYIKAVSELCVSKGSFWVL 426
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,724,950,209
Number of extensions: 28476734
Number of successful extensions: 67915
Number of sequences better than 10.0: 53
Number of HSP's gapped: 67859
Number of HSP's successfully gapped: 53
Length of query: 311
Length of database: 1,732,582,204
Length adjustment: 131
Effective length of query: 180
Effective length of database: 1,031,835,301
Effective search space: 185730354180
Effective search space used: 185730354180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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