Homology VFL450 vs Protein
Query= VFL450 (VFL450Q) /CSM/VF/VFL4-C/VFL450Q.Seq.d/
(627 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54QX3) RecName: Full=COP9 signalosome complex subunit 1; ... 308 2e-82
FB781974_1(FB781974|pid:none) Sequence 1247 from Patent WO200803... 186 6e-46
AF106844_1(AF106844|pid:none) Oryza sativa rCOP11 protein (rCOP1... 186 7e-46
EU964381_1(EU964381|pid:none) Zea mays clone 278453 COP9 signalo... 185 1e-45
BT123801_1(BT123801|pid:none) Picea sitchensis clone WS04717_H18... 180 4e-44
AK117532_1(AK117532|pid:none) Arabidopsis thaliana At3g61140 mRN... 179 7e-44
BT052344_1(BT052344|pid:none) Medicago truncatula clone MTYFD_FE... 178 2e-43
AM461944_1(AM461944|pid:none) Vitis vinifera contig VV78X085418.... 176 6e-43
AL137898_4(AL137898|pid:none) Arabidopsis thaliana DNA chromosom... 175 2e-42
FN393041_1(FN393041|pid:none) Carica papaya mRNA for Cop11 prote... 171 3e-41
BX897685_6(BX897685|pid:none) Zebrafish DNA sequence from clone ... 166 1e-39
BC080478_1(BC080478|pid:none) Xenopus tropicalis MGC89799 protei... 163 5e-39
AK088490_1(AK088490|pid:none) Mus musculus 2 days neonate thymus... 162 1e-38
(Q6NRT5) RecName: Full=COP9 signalosome complex subunit 1; ... 162 1e-38
AL663090_4(AL663090|pid:none) Mouse DNA sequence from clone RP23... 162 1e-38
AB171362_1(AB171362|pid:none) Macaca fascicularis brain cDNA clo... 162 1e-38
BC150066_1(BC150066|pid:none) Bos taurus G protein pathway suppr... 162 1e-38
CR861104_1(CR861104|pid:none) Pongo abelii mRNA; cDNA DKFZp459M2... 162 1e-38
U20285_1(U20285|pid:none) Human Gps1 (GPS1) mRNA, complete cds. 162 1e-38
AK297872_1(AK297872|pid:none) Homo sapiens cDNA FLJ55804 complet... 162 1e-38
AK306331_1(AK306331|pid:none) Pan troglodytes mRNA for COP9 sign... 162 1e-38
AK093283_1(AK093283|pid:none) Homo sapiens cDNA FLJ35964 fis, cl... 162 1e-38
BC064503_1(BC064503|pid:none) Homo sapiens G protein pathway sup... 162 1e-38
AB169327_1(AB169327|pid:none) Macaca fascicularis testis cDNA, c... 162 1e-38
(P97834) RecName: Full=COP9 signalosome complex subunit 1; ... 161 3e-38
FN597582_1(FN597582|pid:none) Citrus x paradisi mRNA for Cop11 p... 160 3e-38
DQ311361_1(DQ311361|pid:none) Bombyx mori G protein pathway supp... 159 1e-37
JO840665_1(JO840665|pid:none) TSA: Amblyomma maculatum Am-43085 ... 154 2e-36
(Q9VVU5) RecName: Full=COP9 signalosome complex subunit 1b; ... 152 9e-36
AF129080_1(AF129080|pid:none) Drosophila melanogaster COP9 signa... 150 6e-35
CR954204_14(CR954204|pid:none) Ostreococcus tauri strain OTTH059... 129 1e-28
CP001323_930(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 129 1e-28
CP000584_10(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ... 124 3e-27
HE601629_199(HE601629|pid:none) Schistosoma mansoni strain Puert... 120 7e-26
HE601629_198(HE601629|pid:none) Schistosoma mansoni strain Puert... 120 7e-26
FN357358_21(FN357358|pid:none) Schistosoma mansoni genome sequen... 120 7e-26
FR824053_110(FR824053|pid:none) Albugo laibachii Nc14, genomic c... 120 7e-26
JI167437_1(JI167437|pid:none) TSA: Ascaris suum ASCF_2568_2497 m... 112 1e-23
EF215373_1(EF215373|pid:none) Callithrix jacchus clone H21-42.2_... 103 8e-21
FQ790320_4(FQ790320|pid:none) Botryotinia fuckeliana isolate T4 ... 98 3e-19
(Q7RXQ1) RecName: Full=COP9 signalosome complex subunit 1; ... 94 4e-18
(Q5BD89) RecName: Full=COP9 signalosome complex subunit 1; ... 91 3e-17
CP003004_553(CP003004|pid:none) Myceliophthora thermophila ATCC ... 91 6e-17
FP929125_47(FP929125|pid:none) Leptosphaeria maculans JN3 lm_Sup... 89 2e-16
AP007151_564(AP007151|pid:none) Aspergillus oryzae RIB40 DNA, SC... 89 2e-16
CP003012_656(CP003012|pid:none) Thielavia terrestris NRRL 8126 c... 87 5e-16
CU633900_445(CU633900|pid:none) Podospora anserina S mat+ genomi... 87 6e-16
AK354238_1(AK354238|pid:none) Hordeum vulgare subsp. vulgare mRN... 76 1e-12
BT041149_1(BT041149|pid:none) Zea mays full-length cDNA clone ZM... 74 4e-12
(Q9GS00) RecName: Full=COP9 signalosome complex subunit 1; ... 74 4e-12
FR824124_35(FR824124|pid:none) Albugo laibachii Nc14, genomic co... 72 2e-11
AK364186_1(AK364186|pid:none) Hordeum vulgare subsp. vulgare mRN... 72 2e-11
GN109511_1(GN109511|pid:none) Sequence 14292 from Patent WO20090... 70 8e-11
BT052608_1(BT052608|pid:none) Medicago truncatula clone MTYFD_FE... 70 8e-11
(Q93Y35) RecName: Full=Probable 26S proteasome non-ATPase regula... 69 1e-10
AF051233_1(AF051233|pid:none) Picea mariana KIAA0107-like protei... 69 2e-10
BT097569_1(BT097569|pid:none) Soybean clone JCVI-FLGm-22A4 unkno... 68 3e-10
GN109467_1(GN109467|pid:none) Sequence 14248 from Patent WO20090... 68 3e-10
GN109509_1(GN109509|pid:none) Sequence 14290 from Patent WO20090... 67 5e-10
GN109513_1(GN109513|pid:none) Sequence 14294 from Patent WO20090... 67 5e-10
GN109475_1(GN109475|pid:none) Sequence 14256 from Patent WO20090... 67 9e-10
BT077883_1(BT077883|pid:none) Lepeophtheirus salmonis Pacific fo... 67 9e-10
GN109489_1(GN109489|pid:none) Sequence 14270 from Patent WO20090... 66 1e-09
FM992695_780(FM992695|pid:none) Candida dubliniensis CD36 chromo... 66 1e-09
FQ311434_76(FQ311434|pid:none) Sporisorium reilianum SRZ2 chromo... 65 2e-09
FQ311434_61(FQ311434|pid:none) Sporisorium reilianum SRZ2 chromo... 65 2e-09
BT094843_1(BT094843|pid:none) Soybean clone JCVI-FLGm-6E4 unknow... 65 3e-09
DQ975456_1(DQ975456|pid:none) Capsicum annuum 26S proteasome sub... 64 6e-09
(Q55C75) RecName: Full=26S proteasome non-ATPase regulatory subu... 64 7e-09
DQ630904_1(DQ630904|pid:none) Gryllus firmus putative accessory ... 61 5e-08
CP000500_582(CP000500|pid:none) Scheffersomyces stipitis CBS 605... 61 5e-08
AL049657_3(AL049657|pid:none) Arabidopsis thaliana DNA chromosom... 61 5e-08
AE014186_276(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 60 6e-08
DQ630907_1(DQ630907|pid:none) Gryllus pennsylvanicus putative ac... 60 6e-08
EZ422386_1(EZ422386|pid:none) TSA: Glossina morsitans morsitans ... 60 6e-08
CR940353_359(CR940353|pid:none) Theileria annulata strain Ankara... 60 8e-08
AM910991_270(AM910991|pid:none) Plasmodium knowlesi strain H chr... 60 1e-07
AM269894_150(AM269894|pid:none) Eimeria tenella chromosome 1, or... 59 1e-07
BC064247_1(BC064247|pid:none) Xenopus tropicalis proteasome (pro... 59 2e-07
AE014840_35(AE014840|pid:none) Plasmodium falciparum 3D7 chromos... 59 2e-07
CU928170_511(CU928170|pid:none) Kluyveromyces thermotolerans str... 59 2e-07
CP000589_200(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 58 3e-07
HE605206_123(HE605206|pid:none) Candida parapsilosis strain CDC3... 58 4e-07
AE017345_56(AE017345|pid:none) Cryptococcus neoformans var. neof... 58 4e-07
HE580267_466(HE580267|pid:none) Naumovozyma dairenensis CBS 421 ... 57 7e-07
HE576752_1128(HE576752|pid:none) Naumovozyma castellii CBS 4309 ... 57 9e-07
BC108599_1(BC108599|pid:none) Xenopus laevis hypothetical protei... 55 2e-06
BC059159_1(BC059159|pid:none) Rattus norvegicus proteasome (pros... 55 3e-06
CP000290_43(CP000290|pid:none) Cryptococcus gattii WM276 chromos... 55 3e-06
(Q15008) RecName: Full=26S proteasome non-ATPase regulatory subu... 55 3e-06
AY359879_1(AY359879|pid:none) Homo sapiens KIAA0107 isoform mRNA... 55 3e-06
BT082315_1(BT082315|pid:none) Anoplopoma fimbria clone afim-evh-... 55 3e-06
AK095059_1(AK095059|pid:none) Homo sapiens cDNA FLJ37740 fis, cl... 55 3e-06
FQ310506_515(FQ310506|pid:none) Dicentrarchus labrax chromosome ... 55 3e-06
FR799584_294(FR799584|pid:none) Leishmania mexicana MHOM/GT/2001... 54 4e-06
AP007155_147(AP007155|pid:none) Aspergillus oryzae RIB40 DNA, SC... 54 4e-06
(Q3T0B2) RecName: Full=26S proteasome non-ATPase regulatory subu... 54 4e-06
(O94308) RecName: Full=COP9 signalosome complex subunit 1; ... 54 6e-06
BT075430_1(BT075430|pid:none) Osmerus mordax clone omor-eva-513-... 54 8e-06
BT043716_1(BT043716|pid:none) Salmo salar clone HM5_2909 proteas... 54 8e-06
HE573027_1687(HE573027|pid:none) Trypanosoma vivax Y486 annotate... 53 1e-05
CT005269_294(CT005269|pid:none) Leishmania major strain Friedlin... 53 1e-05
GU589177_1(GU589177|pid:none) Ictalurus punctatus clone CBZB4464... 53 1e-05
HE575324_1463(HE575324|pid:none) Trypanosoma congolense IL3000 a... 52 2e-05
JP286218_1(JP286218|pid:none) TSA: Hymenochirus curtipes Hymenoc... 52 2e-05
(P68352) RecName: Full=COP9 signalosome complex subunit 1; ... 52 3e-05
(Q94899) RecName: Full=COP9 signalosome complex subunit 2; ... 51 5e-05
JI170366_1(JI170366|pid:none) TSA: Ascaris suum ASCF_4544_1776 m... 50 6e-05
EZ424129_1(EZ424129|pid:none) TSA: Glossina morsitans morsitans ... 50 8e-05
DQ087923_1(DQ087923|pid:none) Larix decidua probable 26S proteas... 50 8e-05
BT077002_1(BT077002|pid:none) Caligus rogercresseyi clone crog-e... 49 1e-04
DQ087922_1(DQ087922|pid:none) Larix laricina probable 26S protea... 49 2e-04
AB169606_1(AB169606|pid:none) Macaca fascicularis brain cDNA, cl... 48 4e-04
BC108778_1(BC108778|pid:none) Xenopus laevis hypothetical protei... 48 4e-04
AK146153_1(AK146153|pid:none) Mus musculus cDNA, RIKEN full-leng... 48 4e-04
AJ720904_1(AJ720904|pid:none) Gallus gallus mRNA for hypothetica... 48 4e-04
FR824270_16(FR824270|pid:none) Albugo laibachii Nc14, genomic co... 48 4e-04
(P61201) RecName: Full=COP9 signalosome complex subunit 2; ... 48 4e-04
AK010383_1(AK010383|pid:none) Mus musculus ES cells cDNA, RIKEN ... 48 4e-04
AB209799_1(AB209799|pid:none) Homo sapiens mRNA for COP9 constit... 48 4e-04
AF071312_1(AF071312|pid:none) Mus musculus COP9 complex subunit ... 48 4e-04
AK222590_1(AK222590|pid:none) Homo sapiens mRNA for COP9 constit... 47 0.001
AB024033_23(AB024033|pid:none) Arabidopsis thaliana genomic DNA,... 46 0.002
BC114035_1(BC114035|pid:none) Bos taurus COP9 constitutive photo... 45 0.002
FN318118_1(FN318118|pid:none) Schistosoma japonicum isolate Anhu... 45 0.002
CP001948_52(CP001948|pid:none) Encephalitozoon intestinalis ATCC... 45 0.003
JI167754_1(JI167754|pid:none) TSA: Ascaris suum ASCF_2787_2396 m... 45 0.003
FN357329_20(FN357329|pid:none) Schistosoma mansoni genome sequen... 44 0.005
AY118505_1(AY118505|pid:none) Drosophila melanogaster LD10463 fu... 44 0.005
BT073643_1(BT073643|pid:none) Oncorhynchus mykiss clone omyk-evn... 43 0.010
JO843379_1(JO843379|pid:none) TSA: Amblyomma maculatum Am-2619 m... 42 0.017
FQ311430_881(FQ311430|pid:none) Sporisorium reilianum SRZ2 chrom... 42 0.023
FQ857236_5(FQ857236|pid:none) Piriformospora indica PIRI_contig_... 42 0.023
FN357475_9(FN357475|pid:none) Schistosoma mansoni genome sequenc... 41 0.050
BT077675_1(BT077675|pid:none) Lepeophtheirus salmonis Pacific fo... 41 0.050
(A8X379) RecName: Full=Probable 26S proteasome regulatory subuni... 41 0.050
FN319010_1(FN319010|pid:none) Schistosoma japonicum isolate Anhu... 40 0.066
AE014134_2830(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.086
AM910995_449(AM910995|pid:none) Plasmodium knowlesi strain H chr... 40 0.086
CP000423_2045(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 40 0.11
CP001951_9(CP001951|pid:none) Encephalitozoon intestinalis ATCC ... 39 0.15
EF576315_1(EF576315|pid:none) Oryza sativa (indica cultivar-grou... 39 0.15
AM270250_1(AM270250|pid:none) Aspergillus niger contig An11c0330... 38 0.43
CP002365_1523(CP002365|pid:none) Lactococcus lactis subsp. lacti... 38 0.43
AE005176_1654(AE005176|pid:none) Lactococcus lactis subsp. lacti... 38 0.43
EF576335_1(EF576335|pid:none) Oryza sativa (indica cultivar-grou... 37 0.56
CP001087_3822(CP001087|pid:none) Desulfobacterium autotrophicum ... 37 0.56
CU633899_116(CU633899|pid:none) Podospora anserina S mat+ genomi... 37 0.95
AP007167_278(AP007167|pid:none) Aspergillus oryzae RIB40 DNA, SC... 36 1.2
CP002874_1711(CP002874|pid:none) Brachyspira intermedia PWS/A, c... 36 1.2
CP001834_1814(CP001834|pid:none) Lactococcus lactis subsp. lacti... 36 1.2
CP000923_328(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 36 1.6
FN424190_38(FN424190|pid:none) Paramecium caudatum complete mito... 36 1.6
AM920435_305(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 36 1.6
FR823391_62(FR823391|pid:none) Neospora caninum Liverpool comple... 36 1.6
AK352672_1(AK352672|pid:none) Thellungiella halophila mRNA, comp... 36 1.6
JN258408_804(JN258408|pid:none) Megavirus chiliensis, complete g... 36 1.6
AK358799_1(AK358799|pid:none) Hordeum vulgare subsp. vulgare mRN... 36 1.6
CP002991_431(CP002991|pid:none) Thermoanaerobacter wiegelii Rt8.... 35 2.7
(Q20938) RecName: Full=Probable 26S proteasome regulatory subuni... 35 2.8
FO081266_16(FO081266|pid:none) Caenorhabditis elegans Cosmid F57... 35 2.8
H88493(H88493)protein F57B9.10 [imported] - Caenorhabditis elegans 35 2.8
AK064788_1(AK064788|pid:none) Oryza sativa Japonica Group cDNA c... 35 2.8
CR954201_330(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 35 2.8
CP002686_1660(CP002686|pid:none) Arabidopsis thaliana chromosome... 35 3.6
AC146468_9(AC146468|pid:none) Oryza sativa (japonica cultivar-gr... 35 3.6
EU969379_1(EU969379|pid:none) Zea mays clone 329471 26S proteaso... 35 3.6
BT053774_1(BT053774|pid:none) Zea mays full-length cDNA clone ZM... 35 3.6
CP001357_14(CP001357|pid:none) Brachyspira hyodysenteriae WA1, c... 34 4.7
BT035753_1(BT035753|pid:none) Zea mays full-length cDNA clone ZM... 34 4.7
CP000903_841(CP000903|pid:none) Bacillus weihenstephanensis KBAB... 34 4.7
CP000507_2982(CP000507|pid:none) Shewanella amazonensis SB2B, co... 34 4.7
BT088060_1(BT088060|pid:none) Zea mays full-length cDNA clone ZM... 34 4.7
BT069707_1(BT069707|pid:none) Zea mays full-length cDNA clone ZM... 34 4.7
CP000377_2984(CP000377|pid:none) Silicibacter sp. TM1040, comple... 34 6.2
(Q7SI58) RecName: Full=COP9 signalosome complex subunit 2; ... 34 6.2
CP001186_536(CP001186|pid:none) Bacillus cereus G9842, complete ... 34 6.2
CP001574_241(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 34 6.2
CP000907_61(CP000907|pid:none) Bacillus weihenstephanensis KBAB4... 34 6.2
(A1XG13) RecName: Full=Putative membrane protein ycf1; ... 33 7.9
AC091330_42(AC091330|pid:none) Trypanosoma brucei chromosome 3 c... 33 8.0
BT051932_1(BT051932|pid:none) Medicago truncatula clone MTYF5_F6... 33 8.0
EZ422812_1(EZ422812|pid:none) TSA: Glossina morsitans morsitans ... 33 8.0
AP008955_2596(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 33 8.0
BT093274_1(BT093274|pid:none) Soybean clone JCVI-FLGm-24C13 unkn... 33 8.0
>(Q54QX3) RecName: Full=COP9 signalosome complex subunit 1;
Short=Signalosome subunit 1;
&DQ309429_1(DQ309429|pid:none)
Length = 458
Score = 308 bits (788), Expect = 2e-82
Identities = 158/188 (84%), Positives = 158/188 (84%)
Frame = +1
Query: 13 KKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILY 192
KKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILY
Sbjct: 264 KKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVEILY 323
Query: 193 QRIRSKALVQYFSPYQSVDMNIMASAFNTXVTXLEKEISKLIMENEIQARIDSHNKRLYA 372
QRIRSKALVQYFSPYQSVDMNIMASAFNT VT LEKEISKLIMENEIQARIDSHNKRLYA
Sbjct: 324 QRIRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLYA 383
Query: 373 RKADQRTTTFEKTVQVGSDFQXXXXXXXXXXXXXXXXXXTVSNRKDNERGNWENPXXXXX 552
RKADQRTTTFEKTVQVGSDFQ TVSNRKDNERGNWENP
Sbjct: 384 RKADQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSNRKDNERGNWENPHHHHQ 443
Query: 553 XXXXXFGL 576
FGL
Sbjct: 444 MQHQMFGL 451
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,491,078,648
Number of extensions: 27565925
Number of successful extensions: 62924
Number of sequences better than 10.0: 185
Number of HSP's gapped: 62901
Number of HSP's successfully gapped: 186
Length of query: 209
Length of database: 1,732,582,204
Length adjustment: 126
Effective length of query: 83
Effective length of database: 1,058,581,366
Effective search space: 87862253378
Effective search space used: 87862253378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Dictyostelium discoideum cDNA Project Home