Dictyostelium discoideum cDNA Clone VFL450

Sequence VFL450

---------- TAAAGAAGAA AGTGATTGAT GATCCAATGT TTAAAAACTA
TTTAGAATTA GTACCAGAAC TTAGGGAATT AATTAACGAT TTCTATAATA
CCAAGTATGG TTCATGTTTA AAGTATCTCG ATAAAATGAA GCCAATTTTA
TTATTGGATA TTCATCTCTA TAAACATGTG GAGATTTTAT ATCAAAGAAT
TAGAAGCAAA GCATTGGTTC AATACTTTTC ACCATACCAA TCGGTCGATA
TGAATATTAT GGCCAGTGCT TTCAATACCN CTGTCACTNT TTTGGAAAAG
GAGATCAGTA AACTCATTAT GGAAAATGAG ATCCAAGCTC GTATCGATTC
TCATAATAAA CGTCTATACG CTAGAAAAGC CGATCAAAGA ACAACCACCT
TTGAAAAAAC CGTTCAAGTT GGTTCCGATT TCCAAAACTC TTCAAATTCT
CTCCTCTTAC GTTTANAGAT GTTAAATAAT AATATCTCAA CCGTTTCAAA
TCGTAAAGAT AATGAAAGAG GTAATTGGGA AAATCCACAT CATCATCACC
AAATGCAACA TCAAATGTTT GGTTTATTTA ATAATAATAA TAAATTTTAA
ATCCAAATAA AAAAAATAAA AAAAAAA

Translated Amino Acid Sequence VFL450

---KKKVIDDPMFKNYLELVPELRELINDFYNTKYGSCLKYLDKMKPILLLDIHLYKHVE
ILYQRIRSKALVQYFSPYQSVDMNIMASAFNTXVTXLEKEISKLIMENEIQARIDSHNKR
LYARKADQRTTTFEKTVQVGSDFQNSSNSLLLRLXMLNNNISTVSNRKDNERGNWENPHH
HHQMQHQMFGLFNNNNKF*iqikkikkk

Homology VFL450 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFL450 (VFL450Q) /CSM/VF/VFL4-C/VFL450Q.Seq.d/                       1168   0.0
AFN309 (AFN309Q) /CSM/AF/AFN3-A/AFN309Q.Seq.d/                       1122   0.0
VSF853 (VSF853Q) /CSM/VS/VSF8-C/VSF853Q.Seq.d/                       1118   0.0
AFJ190 (AFJ190Q) /CSM/AF/AFJ1-D/AFJ190Q.Seq.d/                       1090   0.0
AFG409 (AFG409Q) /CSM/AF/AFG4-A/AFG409Q.Seq.d/                       1088   0.0
AFH239 (AFH239Q) /CSM/AF/AFH2-B/AFH239Q.Seq.d/                       1086   0.0
AFO845 (AFO845Q) /CSM/AF/AFO8-B/AFO845Q.Seq.d/                       1072   0.0
AFD533 (AFD533Q) /CSM/AF/AFD5-B/AFD533Q.Seq.d/                       1070   0.0
VSF618 (VSF618Q) /CSM/VS/VSF6-A/VSF618Q.Seq.d/                       1061   0.0
AFJ388 (AFJ388Q) /CSM/AF/AFJ3-D/AFJ388Q.Seq.d/                       1053   0.0

Homology VFL450 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(DQ309429) Dictyostelium discoideum COP9 signalosome complex...  1108   0.0    1
(BJ433976) Dictyostelium discoideum cDNA clone:ddv23d14, 3' ...  1108   0.0    1
(AU265896) Dictyostelium discoideum vegetative cDNA clone:VS...  1092   0.0    1
(BJ347401) Dictyostelium discoideum cDNA clone:dda27b03, 3' ...  1090   0.0    1
(BJ344566) Dictyostelium discoideum cDNA clone:dda19c23, 3' ...  1090   0.0    1
(BJ342229) Dictyostelium discoideum cDNA clone:dda13b04, 3' ...  1088   0.0    1
(BJ342923) Dictyostelium discoideum cDNA clone:dda15m10, 3' ...   900   0.0    2
(BJ346259) Dictyostelium discoideum cDNA clone:dda30j12, 3' ...   977   0.0    2
(BJ341802) Dictyostelium discoideum cDNA clone:dda8a09, 3' e...   979   0.0    2
(BJ429955) Dictyostelium discoideum cDNA clone:ddv5d15, 3' e...  1047   0.0    1

Homology VFL450 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54QX3) RecName: Full=COP9 signalosome complex subunit 1;      ...   308   2e-82
FB781974_1(FB781974|pid:none) Sequence 1247 from Patent WO200803...   186   6e-46
AF106844_1(AF106844|pid:none) Oryza sativa rCOP11 protein (rCOP1...   186   7e-46
EU964381_1(EU964381|pid:none) Zea mays clone 278453 COP9 signalo...   185   1e-45
BT123801_1(BT123801|pid:none) Picea sitchensis clone WS04717_H18...   180   4e-44
AK117532_1(AK117532|pid:none) Arabidopsis thaliana At3g61140 mRN...   179   7e-44
BT052344_1(BT052344|pid:none) Medicago truncatula clone MTYFD_FE...   178   2e-43
AM461944_1(AM461944|pid:none) Vitis vinifera contig VV78X085418....   176   6e-43
AL137898_4(AL137898|pid:none) Arabidopsis thaliana DNA chromosom...   175   2e-42
FN393041_1(FN393041|pid:none) Carica papaya mRNA for Cop11 prote...   171   3e-41

Homology VFL450 vs Genome