Homology VFL450 vs DNA
Query= VFL450 (VFL450Q) /CSM/VF/VFL4-C/VFL450Q.Seq.d/
(627 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(DQ309429) Dictyostelium discoideum COP9 signalosome complex... 1108 0.0 1
(BJ433976) Dictyostelium discoideum cDNA clone:ddv23d14, 3' ... 1108 0.0 1
(AU265896) Dictyostelium discoideum vegetative cDNA clone:VS... 1092 0.0 1
(BJ347401) Dictyostelium discoideum cDNA clone:dda27b03, 3' ... 1090 0.0 1
(BJ344566) Dictyostelium discoideum cDNA clone:dda19c23, 3' ... 1090 0.0 1
(BJ342229) Dictyostelium discoideum cDNA clone:dda13b04, 3' ... 1088 0.0 1
(BJ342923) Dictyostelium discoideum cDNA clone:dda15m10, 3' ... 900 0.0 2
(BJ346259) Dictyostelium discoideum cDNA clone:dda30j12, 3' ... 977 0.0 2
(BJ341802) Dictyostelium discoideum cDNA clone:dda8a09, 3' e... 979 0.0 2
(BJ429955) Dictyostelium discoideum cDNA clone:ddv5d15, 3' e... 1047 0.0 1
(BJ344630) Dictyostelium discoideum cDNA clone:dda19p21, 3' ... 977 0.0 2
(AU265509) Dictyostelium discoideum vegetative cDNA clone:VS... 1009 0.0 1
(AU267493) Dictyostelium discoideum vegetative cDNA clone:VS... 789 0.0 2
(AU263815) Dictyostelium discoideum vegetative cDNA clone:VS... 827 0.0 1
(BJ343845) Dictyostelium discoideum cDNA clone:dda17k07, 3' ... 743 0.0 1
(BJ435211) Dictyostelium discoideum cDNA clone:ddv26n09, 3' ... 617 e-172 1
(BJ429956) Dictyostelium discoideum cDNA clone:ddv5d16, 3' e... 323 e-170 3
(BJ433982) Dictyostelium discoideum cDNA clone:ddv23e14, 3' ... 494 e-135 1
(AU265895) Dictyostelium discoideum vegetative cDNA clone:VS... 80 1e-10 1
(FC376644) CAYZ1077.fwd CAYZ Physcomitrella patens subsp. pa... 46 3e-05 2
(BJ978378) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(FC400316) CAYZ23667.fwd CAYZ Physcomitrella patens subsp. p... 46 3e-05 2
(BJ604195) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(BJ600505) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(FC376643) CAYZ1077.rev CAYZ Physcomitrella patens subsp. pa... 46 3e-05 2
(FC400315) CAYZ23667.rev CAYZ Physcomitrella patens subsp. p... 46 3e-05 2
(BJ605966) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(BJ603786) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(BJ594472) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(BJ609750) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(BJ976311) Physcomitrella patens subsp. patens cDNA clone:pp... 46 3e-05 2
(DC919255) Physcomitrella patens subsp. patens cDNA, clone:p... 46 3e-05 2
(FC346073) CAYY23595.rev CAYY Physcomitrella patens subsp. p... 46 3e-05 2
(BI488306) gc77f04.y1 Moss EST library PPN Physcomitrella pa... 46 0.001 2
(AC122671) Rattus norvegicus clone CH230-87H4, *** SEQUENCIN... 52 0.025 1
(AC108605) Rattus norvegicus clone CH230-267P22, *** SEQUENC... 52 0.025 1
(CD804045) UI-M-GV0-chw-j-04-0-UI.r1 NIH_BMAP_GV0 Mus muscul... 38 0.14 2
(CK781236) UI-M-GV0-clo-j-14-0-UI.r1 NIH_BMAP_GV0 Mus muscul... 38 0.21 2
(CK637396) UI-M-HO0-cnp-p-22-0-UI.r1 NIH_BMAP_HO0 Mus muscul... 38 0.21 2
(CB235720) AGENCOURT_11474035 NIH_MGC_166 Mus musculus cDNA ... 38 0.22 2
(CF743179) UI-M-GV0-clo-c-13-0-UI.r1 NIH_BMAP_GV0 Mus muscul... 38 0.23 2
(CV559225) UI-M-HZ0-cti-c-04-0-UI.r1 NIH_BMAP_HZ0 Mus muscul... 38 0.23 2
(DV064134) NEONATAL_21_F11.x1 FH NEONATAL Mus musculus cDNA ... 38 0.26 2
(BC027339) Mus musculus GRIP and coiled-coil domain containi... 38 0.63 2
(BC139007) Mus musculus GRIP and coiled-coil domain containi... 38 1.5 2
(AB093232) Mus musculus premature mRNA for mKIAA0336 protein. 38 1.6 2
(CK297990) EST760704 Nicotiana benthamiana mixed tissue cDNA... 46 1.6 1
(AC004697) Arabidopsis thaliana chromosome 2 clone T16B24 ma... 36 2.4 4
(DJ386564) Diagnosis of Diseases Associated with Metastasis. 44 6.2 1
(CS790169) Sequence 1425 from Patent WO2005031001. 44 6.2 1
(AX281360) Sequence 24 from Patent WO0177376. 44 6.2 1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 44 6.2 1
(AC005798) Homo sapiens chromosome 4 clone RP11-442P12, comp... 44 6.2 1
(AC006425) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 44 6.2 1
(EK404939) 1095500032796 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.2 1
(EJ979594) 1093022144451 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ974964) 1093022111030 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(CZ539654) SRAA-aad27a06.g1 Strongyloides ratti whole genome... 44 6.2 1
(CU022981) Equus caballus GSS, BAC clone CH241-93E6, SP6 end... 44 6.2 1
(AG100007) Pan troglodytes DNA, clone: PTB-102H08.F. 44 6.2 1
(EL888855) CGF2003151_D06 PV-02 Pratylenchus vulnus cDNA clo... 44 6.2 1
(EE580603) rSE37nDBL25 Ugandan isolate UAS37 Pf var gene cDN... 44 6.2 1
(BI742567) kt52f05.y4 Strongyloides ratti L1 pAMP1 v3 Chiape... 44 6.2 1
(AA913030) ol34a04.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 44 6.2 1
(FC815825) Sr_pAMT7_04e13_T7 S. ratti mixed stage pAMP Stron... 44 6.2 1
(CU407093) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 8.5 2
>(DQ309429) Dictyostelium discoideum COP9 signalosome complex subunit
1 (csn1) mRNA, complete cds.
Length = 1377
Score = 1108 bits (559), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Plus
Query: 11 taaagaagaaagtgattgatgatccaatgtttaaaaactatttagaattagtaccagaac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 taaagaagaaagtgattgatgatccaatgtttaaaaactatttagaattagtaccagaac 847
Query: 71 ttagggaattaattaacgatttctataataccaagtatggttcatgtttaaagtatctcg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ttagggaattaattaacgatttctataataccaagtatggttcatgtttaaagtatctcg 907
Query: 131 ataaaatgaagccaattttattattggatattcatctctataaacatgtggagattttat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ataaaatgaagccaattttattattggatattcatctctataaacatgtggagattttat 967
Query: 191 atcaaagaattagaagcaaagcattggttcaatacttttcaccataccaatcggtcgata 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 atcaaagaattagaagcaaagcattggttcaatacttttcaccataccaatcggtcgata 1027
Query: 251 tgaatattatggccagtgctttcaataccnctgtcactnttttggaaaaggagatcagta 310
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1028 tgaatattatggccagtgctttcaataccactgtcactcttttggaaaaggagatcagta 1087
Query: 311 aactcattatggaaaatgagatccaagctcgtatcgattctcataataaacgtctatacg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 aactcattatggaaaatgagatccaagctcgtatcgattctcataataaacgtctatacg 1147
Query: 371 ctagaaaagccgatcaaagaacaaccacctttgaaaaaaccgttcaagttggttccgatt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ctagaaaagccgatcaaagaacaaccacctttgaaaaaaccgttcaagttggttccgatt 1207
Query: 431 tccaaaactcttcaaattctctcctcttacgtttanagatgttaaataataatatctcaa 490
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1208 tccaaaactcttcaaattctctcctcttacgtttagagatgttaaataataatatctcaa 1267
Query: 491 ccgtttcaaatcgtaaagataatgaaagaggtaattgggaaaatccacatcatcatcacc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 ccgtttcaaatcgtaaagataatgaaagaggtaattgggaaaatccacatcatcatcacc 1327
Query: 551 aaatgcaacatcaaatgtttggtttatt 578
||||||||||||||||||||||||||||
Sbjct: 1328 aaatgcaacatcaaatgtttggtttatt 1355
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 684,030,188
Number of extensions: 41713715
Number of successful extensions: 3100258
Number of sequences better than 10.0: 66
Length of query: 627
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 604
Effective length of database: 96,507,600,660
Effective search space: 58290590798640
Effective search space used: 58290590798640
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home