Dictyostelium discoideum cDNA Clone VFL220

Sequence VFL220

CACTGTTGGC CTACTGGAAC CTTAATAAAA AAATAAACTC ATGTACATAT
AAAAATTAAA ATAAAAGAAA AAAAAATGAA AAGGACGATA ATAATATTAT
TATTTGTATC ATTATTTGTA ACATTTGTTT TATCACAAAT ACCAGATAAT
GATCCAGAAT TATGTCAACA AAGAATTCAA AGAGAGGATT GTCCACAAAC
ACCAGTACCA TGGGGAACAT TCAATGACAA TGACGAAATC GAAGTCTACT
ATATGCAAGC ACCAGTTTTC GAAGCAGTTT TTGGAAATTT CTTTGGTAAG
TTGGGTGGAT ATCATTCAGC AATTGGTTTC TATGACCTTA CAACTGGTTT
AAATTATACA GCAGAATATG ATGCTTTCTT TGAAGTAGGA AATGGTACAT
TACCAAATAT CATAAATGTC GATGGTAAAG ATGAACTTTT ATGGTGTAAT
GCTGGTATCC TTTGTACTGT TCCATACATT AATGAAACTT ATTGGGATAA
AAACATCTAT TCAACTGCTT CAAAAACTTA TATGGGAACA ATTAATGGTA
CTCAATTAAA TCAATATATC GAATGGATGC AACAATATAA TATTTCAAAT
CCAGTATACC AAACATGGGA CGTNTGG--- -------ANT ANNGNAGGGG
CAATTGNCCN AAGCATTGGA AGGNNTTTAN CNANCNTNGG NTTAAAGGAN
TNNNTTTACG GNCNAGGNGA ANATTATTTA TTAGAATTAA ATTANCCCTT
TATGNATGCC AAATATGGTT ATATCCCCTT ACCCGGTTGN CCNGNGAANG
GGATCGGTTA TGNAA

Translated Amino Acid Sequence VFL220

hcwptgtlikk*THVHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQ
REDCPQTPVPWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYT
AEYDAFFEVGNGTLPNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGT
INGTQLNQYIEWMQQYNISNPVYQTWDVW---

---XXXGAIXXSIGRXLXXXGLKXXXYGXGEXYLLELNXPFMXAKYGYIPLPGXPXXGIG
YX

Homology VFL220 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                       1227   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                       1086   0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                       1072   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                       1049   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                       1003   0.0
SSA660 (SSA660Q) /CSM/SS/SSA6-C/SSA660Q.Seq.d/                        932   0.0
VFH286 (VFH286Q) /CSM/VF/VFH2-D/VFH286Q.Seq.d/                        902   0.0
SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/                        860   0.0
SSB231 (SSB231Q) /CSM/SS/SSB2-B/SSB231Q.Seq.d/                        833   0.0
SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/                        797   0.0

Homology VFL220 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ415600) Dictyostelium discoideum cDNA clone:ddv23g06, 5' ...  1072   0.0    2
(BJ414588) Dictyostelium discoideum cDNA clone:ddv19a22, 5' ...  1061   0.0    1
(BJ425060) Dictyostelium discoideum cDNA clone:ddv54b16, 5' ...  1059   0.0    1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  1035   0.0    2
(BJ413283) Dictyostelium discoideum cDNA clone:ddv14n24, 5' ...  1019   0.0    1
(BJ411824) Dictyostelium discoideum cDNA clone:ddv5p20, 5' e...   839   0.0    3
(BJ389934) Dictyostelium discoideum cDNA clone:dds20i16, 5' ...   769   0.0    2
(BJ417874) Dictyostelium discoideum cDNA clone:ddv15k22, 5' ...   932   0.0    1
(AU076369) Dictyostelium discoideum slug cDNA, clone SSA660.      920   0.0    1
(AU061512) Dictyostelium discoideum slug cDNA, clone SLE504.      795   0.0    1

Homology VFL220 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   360   3e-98
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   340   5e-92
AB528107_1(AB528107|pid:none) Synthetic construct DNA, clone: pF...   100   1e-19
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...    99   2e-19
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...    99   2e-19
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    98   5e-19
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    95   4e-18
(Q5JZQ9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    95   4e-18
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    95   5e-18
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    94   6e-18

Homology VFL220 vs Genome