Homology VFJ295 vs Protein
Query= VFJ295 (VFJ295Q) /CSM/VF/VFJ2-D/VFJ295Q.Seq.d/
(998 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC154154_1(BC154154|pid:none) Danio rerio Ras-related GTP bindin... 263 1e-68
BC095626_1(BC095626|pid:none) Danio rerio Ras-related GTP bindin... 263 1e-68
AK166658_1(AK166658|pid:none) Mus musculus 5 days embryo whole b... 262 2e-68
(Q9HB90) RecName: Full=Ras-related GTP-binding protein C; ... 262 2e-68
AX405799_1(AX405799|pid:none) Sequence 214 from Patent WO0222660. 262 2e-68
AB017616_1(AB017616|pid:none) Mus musculus YGR163w mRNA homologu... 262 2e-68
BC119864_1(BC119864|pid:none) Bos taurus Ras-related GTP binding... 262 2e-68
BC142594_1(BC142594|pid:none) Danio rerio zgc:162165, mRNA (cDNA... 262 2e-68
BC123045_1(BC123045|pid:none) Xenopus tropicalis Ras-related GTP... 261 4e-68
AF323609_1(AF323609|pid:none) Homo sapiens GTPase-interacting pr... 261 4e-68
AJ719695_1(AJ719695|pid:none) Gallus gallus mRNA for hypothetica... 260 7e-68
CR853286_11(CR853286|pid:none) Zebrafish DNA sequence from clone... 258 4e-67
BC118790_1(BC118790|pid:none) Xenopus tropicalis Ras-related GTP... 257 6e-67
BC084295_1(BC084295|pid:none) Xenopus laevis hypothetical LOC495... 257 8e-67
AK017818_1(AK017818|pid:none) Mus musculus 8 days embryo whole b... 256 1e-66
(Q7TT45) RecName: Full=Ras-related GTP-binding protein D; ... 255 3e-66
AL772288_2(AL772288|pid:none) Mouse DNA sequence from clone RP23... 255 3e-66
BC167014_1(BC167014|pid:none) Rattus norvegicus Ras-related GTP ... 255 3e-66
GU588962_1(GU588962|pid:none) Ictalurus punctatus clone CBPN2611... 255 3e-66
AY231687_1(AY231687|pid:none) Drosophila yakuba clone yak-em_CG8... 246 1e-63
AE013599_663(AE013599|pid:none) Drosophila melanogaster chromoso... 243 1e-62
BT080688_1(BT080688|pid:none) Caligus clemensi clone ccle-evs-50... 242 2e-62
AM920436_2299(AM920436|pid:none) Penicillium chrysogenum Wiscons... 188 1e-57
AM269980_93(AM269980|pid:none) Aspergillus niger contig An01c033... 189 2e-57
FQ790350_67(FQ790350|pid:none) Botryotinia fuckeliana isolate T4... 194 2e-56
CR380951_134(CR380951|pid:none) Candida glabrata strain CBS138 c... 175 3e-54
CU928179_927(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 177 3e-54
AE016820_330(AE016820|pid:none) Ashbya gossypii ATCC 10895 chrom... 177 7e-54
CU928168_154(CU928168|pid:none) Kluyveromyces thermotolerans str... 176 7e-54
(P53290) RecName: Full=GTP-binding protein GTR2; &AB015239_1(AB... 179 2e-53
HE605205_243(HE605205|pid:none) Candida parapsilosis strain CDC3... 175 3e-53
CR382133_508(CR382133|pid:none) Debaryomyces hansenii strain CBS... 176 1e-52
FM992695_281(FM992695|pid:none) Candida dubliniensis CD36 chromo... 177 5e-52
HE612866_186(HE612866|pid:none) Tetrapisispora phaffii CBS 4417 ... 169 4e-51
HE576754_556(HE576754|pid:none) Naumovozyma castellii CBS 4309 c... 171 4e-51
CP003012_648(CP003012|pid:none) Thielavia terrestris NRRL 8126 c... 180 8e-50
CU633900_381(CU633900|pid:none) Podospora anserina S mat+ genomi... 177 2e-48
CP003004_562(CP003004|pid:none) Myceliophthora thermophila ATCC ... 177 2e-48
CR382130_423(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 179 2e-43
AF490406_1(AF490406|pid:none) Mus musculus hypothetical GTP-bind... 177 1e-42
AL606962_5(AL606962|pid:none) Mouse DNA sequence from clone RP23... 162 3e-38
AL772288_4(AL772288|pid:none) Mouse DNA sequence from clone RP23... 160 8e-38
AL606962_7(AL606962|pid:none) Mouse DNA sequence from clone RP23... 159 2e-37
FR799573_609(FR799573|pid:none) Leishmania mexicana MHOM/GT/2001... 142 3e-32
AM502254_640(AM502254|pid:none) Leishmania infantum chromosome 3... 142 4e-32
HE573026_883(HE573026|pid:none) Trypanosoma vivax Y486 annotated... 136 2e-30
FN554973_1079(FN554973|pid:none) Trypanosoma brucei gambiense DA... 132 2e-29
AH015505_1(AH015505|pid:none) Sus scrofa ras-related GTP binding... 129 3e-28
JI215544_1(JI215544|pid:none) TSA: Ascaris suum ASCP_7094_561 mR... 121 5e-26
BC071245_1(BC071245|pid:none) Mus musculus Ras-related GTP bindi... 104 7e-21
CP000288_670(CP000288|pid:none) Cryptococcus gattii WM276 chromo... 74 2e-11
BC037732_1(BC037732|pid:none) Mus musculus Ras-related GTP bindi... 72 6e-11
AE017343_60(AE017343|pid:none) Cryptococcus neoformans var. neof... 70 2e-10
FQ311472_162(FQ311472|pid:none) Sporisorium reilianum SRZ2 chrom... 65 6e-09
AY813504_1(AY813504|pid:none) Schistosoma japonicum clone SJCHGC... 62 6e-08
FN314624_1(FN314624|pid:none) Schistosoma japonicum isolate Anhu... 59 3e-07
FN357446_18(FN357446|pid:none) Schistosoma mansoni genome sequen... 57 2e-06
JI173491_1(JI173491|pid:none) TSA: Ascaris suum ASCF_6385_1349 m... 55 6e-06
AK289407_1(AK289407|pid:none) Homo sapiens cDNA FLJ76642 complet... 55 8e-06
BC049033_1(BC049033|pid:none) Danio rerio Ras-related GTP bindin... 55 8e-06
CP001141_252(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 55 8e-06
BC072080_1(BC072080|pid:none) Xenopus laevis MGC78980 protein, m... 54 2e-05
(Q63487) RecName: Full=Ras-related GTP-binding protein B; ... 54 2e-05
BC124979_1(BC124979|pid:none) Xenopus laevis Ras-related GTP-bin... 54 2e-05
BC037615_1(BC037615|pid:none) Mus musculus Ras-related GTP bindi... 54 2e-05
AM270126_43(AM270126|pid:none) Aspergillus niger contig An07c008... 54 2e-05
AB172293_1(AB172293|pid:none) Macaca fascicularis brain cDNA clo... 54 2e-05
AY890989_1(AY890989|pid:none) Synthetic construct Homo sapiens c... 54 2e-05
GU587940_1(GU587940|pid:none) Ictalurus furcatus clone CBZC12219... 53 3e-05
BT082778_1(BT082778|pid:none) Anoplopoma fimbria clone afim-evh-... 53 3e-05
EZ422872_1(EZ422872|pid:none) TSA: Glossina morsitans morsitans ... 53 3e-05
AY816075_1(AY816075|pid:none) Schistosoma japonicum SJCHGC00956 ... 53 3e-05
BT048595_1(BT048595|pid:none) Salmo salar clone ssal-rgb2-625-11... 53 3e-05
HE580271_13(HE580271|pid:none) Naumovozyma dairenensis CBS 421 c... 51 9e-05
T25244(T25244) hypothetical protein T24F1.1 - Caenorhabditis ele... 50 1e-04
(O74824) RecName: Full=GTP-binding protein gtr1; &AL031854_13(A... 50 1e-04
AK004955_1(AK004955|pid:none) Mus musculus adult male liver cDNA... 50 1e-04
CR382127_318(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 50 1e-04
FM992689_773(FM992689|pid:none) Candida dubliniensis CD36 chromo... 50 2e-04
FR823386_61(FR823386|pid:none) Neospora caninum Liverpool comple... 50 2e-04
FN554974_372(FN554974|pid:none) Trypanosoma brucei gambiense DAL... 49 3e-04
FN392321_321(FN392321|pid:none) Pichia pastoris GS115 chromosome... 49 4e-04
FP929138_171(FP929138|pid:none) Leptosphaeria maculans JN3 lm_Su... 49 4e-04
HE612858_464(HE612858|pid:none) Tetrapisispora phaffii CBS 4417 ... 49 4e-04
CU928170_290(CU928170|pid:none) Kluyveromyces thermotolerans str... 49 6e-04
CR382123_272(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 49 6e-04
BT078369_1(BT078369|pid:none) Lepeophtheirus salmonis Pacific fo... 48 0.001
CP003009_877(CP003009|pid:none) Thielavia terrestris NRRL 8126 c... 46 0.004
HE576753_13(HE576753|pid:none) Naumovozyma castellii CBS 4309 co... 46 0.004
CU928173_35(CU928173|pid:none) Zygosaccharomyces rouxii strain C... 45 0.005
(Q00582) RecName: Full=GTP-binding protein GTR1; &AY692917_1(AY... 45 0.006
JO842858_1(JO842858|pid:none) TSA: Amblyomma maculatum Am-4892 m... 45 0.008
AE016819_681(AE016819|pid:none) Ashbya gossypii ATCC 10895 chrom... 45 0.008
CR382136_111(CR382136|pid:none) Debaryomyces hansenii strain CBS... 42 0.069
AY815462_1(AY815462|pid:none) Schistosoma japonicum SJCHGC03284 ... 41 0.090
CP000286_705(CP000286|pid:none) Cryptococcus gattii WM276 chromo... 41 0.090
AF063866_164(AF063866|pid:none) Melanoplus sanguinipes entomopox... 39 0.58
CP000142_418(CP000142|pid:none) Pelobacter carbinolicus DSM 2380... 37 1.7
FP929140_2064(FP929140|pid:none) gamma proteobacterium HdN1, com... 37 2.2
CP001720_734(CP001720|pid:none) Desulfotomaculum acetoxidans DSM... 37 2.2
HE605203_813(HE605203|pid:none) Candida parapsilosis strain CDC3... 35 6.5
CP001932_1514(CP001932|pid:none) Natrialba magadii ATCC 43099, c... 35 8.4
GU589136_1(GU589136|pid:none) Ictalurus punctatus clone CBZA4038... 35 8.4
CP000612_1489(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 35 8.4
>BC154154_1(BC154154|pid:none) Danio rerio Ras-related GTP binding
C, mRNA (cDNA clone MGC:173628 IMAGE:7414667), complete
cds.
Length = 380
Score = 263 bits (671), Expect = 1e-68
Identities = 124/175 (70%), Positives = 152/175 (86%), Gaps = 1/175 (0%)
Frame = +3
Query: 6 PNETLFLESTSKVVKNDISNSSFVQFQIWDFPGQLDFFDPSFDYEYILNNCGAIVFVIDA 185
PNETLFLEST+K+ K+DIS+SSFV FQIWDFPGQ+DFFDP+FDYE I GA++FVIDA
Sbjct: 68 PNETLFLESTNKIYKDDISSSSFVNFQIWDFPGQVDFFDPTFDYEMIFRGTGALIFVIDA 127
Query: 186 QDEIIEALQKLHQTIAKVYQINPNIHFEVFIHKSDGLSDDHKIDRQRDIQQKTTEELADA 365
QD+ +EAL +LH T+++ Y++NP I+FEVFIHK DGLSDDHKI+ QRDI Q+ ++LADA
Sbjct: 128 QDDYVEALSRLHLTVSRAYRVNPEINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 187
Query: 366 NI-NVHPSFYVTSIYDHSIFEAFSKVIQKLIPQLPTLENLLDVXISRSRIEKAFL 527
++ +H SFY+TSIYDHSIFEAFSKV+QKLIPQLPTLENLL++ IS S IEKAFL
Sbjct: 188 SLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFL 242
Score = 106 bits (265), Expect = 2e-21
Identities = 59/119 (49%), Positives = 69/119 (57%)
Frame = +1
Query: 541 VFXFRSXIXKAFLVDVVSKIYXATDXSPVXMXTYELCXXXXXXXXXXXXXXXXXXXXXXX 720
+F S I KAFL DVVSKIY ATD SPV M +YELC
Sbjct: 230 IFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYGLKEDGSGS 289
Query: 721 XXXXXSXSVIXLXNGMVLYLKEVNKYLALVCLLRESNFDKHGLIDYXFIXFKKAIEEVF 897
S ++I L N VLYLKEV K+LALVC+LRE +F++ GLIDY F F+KAI EVF
Sbjct: 290 AYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFRKAIHEVF 348
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,648,506,775
Number of extensions: 24552197
Number of successful extensions: 57056
Number of sequences better than 10.0: 104
Number of HSP's gapped: 56926
Number of HSP's successfully gapped: 162
Length of query: 332
Length of database: 1,732,582,204
Length adjustment: 132
Effective length of query: 200
Effective length of database: 1,026,486,088
Effective search space: 205297217600
Effective search space used: 205297217600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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