Dictyostelium discoideum cDNA Clone VFI287

Sequence VFI287

ATGATTTCTG GTTTATTTAA ATTATCAAAT AAACAAAGNG TTTTACAAAA
TGCAACCAAA TTAGTTTTAC AACGTCGTNC ATTNTTTAAT ATTGTNCCAA
ATCCAAGNGT TGGATTAACA GAGGATCAAA AACAATTTCA ATCAATGGCA
TTAGATTTTG CNCAAGAAAA GATGAAACCA TTTGCAGAGA AATGGGATAA
AGAGGAATAT TTTCCAAGAG ATGTGATGAG AGAAGCAGCA NAATTAGGAT
TTGGNGGTAT TTATGTTAGA GAGGATGTAG GNGGATCAGG ATTGAGTAGA
TTGGATGCAT CGATAATTAT AGAGGCATTG GCATCAGCAG ATGTCTCAAC
AACAGCATTC ATTAGTATTC ATAATATGNG NGCAGGTTTA ATAGA-----
-----ACGCA GGCTCATTGT CAACCAAAGC AACCAAAGAT GGCGATCATT
ATATTTTAAA TGGAAGCAAG GCATTCATTA GCGGGGGTGG CGACAGCGAG
GTCTATTTAG TCATGGTCAG AACGGGCGCG GAGAAGGGAC CAAAGGGGAT
CTCCTGTCTC TTGGTGGAGA AGGACACCCC AGGCCTTAGC TTCGGCAAAA
AGGAGGAGAA ACTAGGCTGG AACACCCAAC CAACTCGTGC ATTGATTTTC
GAAGATTGTC GTGTACCAGT TGGCAATTTA ATTGGCAAAG AGGGTCAAGG
CTTTTCCATT GCTATGAACG CTTTAAACGG CGGTCGTATC AACATTGGTG
CTTGTAGTTT GGGTGGGGCC CAATCTTGTT TGGTGGCCGC TAGAGATCAT
GTTAAAGTTA GAAAACAATT CAATCAACCA TTGGAACATT TCCAAGCCGT
TCAATTTAAA ATGGCAGATA TGGCCACTAA ATTACATGCA TCTCGTATTA
TGATTAGAAA TGCCGCTGCA ATGTTGGATG CAAAAGATCC ATCTGCTCAT
GTTTACATTG CAATGGCAAA ATTATTTGCT TGTGATGAAT GTTTCAAAGT
TACCGATGAT TCACTTCAAT TATTTGGTGG TTATGGTTAT CTTAAAGATT
ATCCAGTTGA AAGATATTTA CGTGATCTTC GTGTTCATCG TATTTTGGAA
GGTTCTGATG CTGTTATGAG ATNATCATTT CAAGAGAATT AAGTAAAGA

Translated Amino Acid Sequence VFI287

MISGLFKLSNKQXVLQNATKLVLQRRXXFNIVPNPXVGLTEDQKQFQSMALDFAQEKMKP
FAEKWDKEEYFPRDVMREAAXLGFGGIYVREDVGGSGLSRLDASIIIEALASADVSTTAF
ISIHNMXAGLI---

---AGSLSTKATKDGDHYILNGSKAFISGGGDSEVYLVMVRTGAEKGPKGISCLLVEKDT
PGLSFGKKEEKLGWNTQPTRALIFEDCRVPVGNLIGKEGQGFSIAMNALNGGRINIGACS
LGGAQSCLVAARDHVKVRKQFNQPLEHFQAVQFKMADMATKLHASRIMIRNAAAMLDAKD
PSAHVYIAMAKLFACDECFKVTDDSLQLFGGYGYLKDYPVERYLRDLRVHRILEGSDAVM
RXSFQEN*vk

Homology VFI287 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFI287 (VFI287Q) /CSM/VF/VFI2-D/VFI287Q.Seq.d/                       2147   0.0
SFG829 (SFG829Q) /CSM/SF/SFG8-B/SFG829Q.Seq.d/                       1469   0.0
SFF648 (SFF648Q) /CSM/SF/SFF6-B/SFF648Q.Seq.d/                       1453   0.0
AFM805 (AFM805Q) /CSM/AF/AFM8-A/AFM805Q.Seq.d/                       1453   0.0
VFC645 (VFC645Q) /CSM/VF/VFC6-B/VFC645Q.Seq.d/                       1445   0.0
VFG172 (VFG172Q) /CSM/VF/VFG1-C/VFG172Q.Seq.d/                       1366   0.0
CFA163 (CFA163Q) /CSM/CF/CFA1-C/CFA163Q.Seq.d/                       1360   0.0
VFM512 (VFM512Q) /CSM/VF/VFM5-A/VFM512Q.Seq.d/                       1261   0.0
VFB804 (VFB804Q) /CSM/VF/VFB8-A/VFB804Q.Seq.d/                       1257   0.0
SFB688 (SFB688Q) /CSM/SF/SFB6-D/SFB688Q.Seq.d/                       1253   0.0

Homology VFI287 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


U17110|U17110.1 Clostridium acetobutylicum crotonase (crt), ...    48   9e-04  4
BX866308|BX866308.1 Rainbow trout multi-tissues - normalized...    56   0.001  1
AE007768|AE007768.1 Clostridium acetobutylicum ATCC824 secti...    48   0.011  4
AP004603|AP004603.1 Oceanobacillus iheyensis HTE831 genomic ...    50   0.070  1
AL331969|AL331969.1 Tetraodon nigroviridis genome survey seq...    50   0.070  1
BX005351|BX005351.7 Zebrafish DNA sequence from clone CH211-...    34   0.11   7
AE015944|AE015944.1 Clostridium tetani E88, section 9 of 10 ...    36   0.15   2
CA347210|CA347210.1 678289 NCCCWA 1RT Oncorhynchus mykiss cD...    48   0.28   1
CB075142|CB075142.1 hx15g08.b1 Gingko megasporophyll (NYBG) ...    44   0.69   2
BX324218|BX324218.3 Zebrafish DNA sequence *** SEQUENCING IN...    34   0.89   7

Homology VFI287 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54IM8) RecName: Full=Isobutyryl-CoA dehydrogenase, mitochondri...   481   0.0
BC044203_1(BC044203|pid:none) Danio rerio acyl-Coenzyme A dehydr...   318   e-116
AK019502_1(AK019502|pid:none) Mus musculus 0 day neonate skin cD...   315   e-115
AK029897_1(AK029897|pid:none) Mus musculus adult male testis cDN...   315   e-115
(Q9UKU7) RecName: Full=Isobutyryl-CoA dehydrogenase, mitochondri...   314   e-115
AK051091_1(AK051091|pid:none) Mus musculus 9 days embryo whole b...   314   e-115
BC001964_1(BC001964|pid:none) Homo sapiens acyl-Coenzyme A dehyd...   314   e-115
(Q9D7B6) RecName: Full=Isobutyryl-CoA dehydrogenase, mitochondri...   313   e-115
AP007255_3586(AP007255|pid:none) Magnetospirillum magneticum AMB...   325   e-114
CU459003_1469(CU459003|pid:none) Magnetospirillum gryphiswaldens...   319   e-113

Homology VFI287 vs Genome