Dictyostelium discoideum cDNA Clone VFH322

Sequence VFH322

TTTATCGGTG GATCAGCAAA GAATGCAACA CATACAATTA TTATGGCACA
ATTAAAAGTT AGTGGTAAGA TGGAAGGAGT TCATGCATTT GTTGCAAGAA
TTAGAAATGA TGATGGTAGT CTAGTGAAGG GTGTTGATAT TAGAGATTGT
GGTGTAAAGA TGGCTTTGAA TGGTGTTGAT AATGGTAGAA TCATGTTTAA
AGATTTACAT ATACCAAGAG ACCAATTATT GAATAGATTT GGTGGAGTTA
ACAGAGCAGG CATTTACACA TCACCAATTA ATCCTGCAAA TAAACGTTTT
GCCAATACCA TTGGTGCATT GGTACTTGGT CGTTACATTG TTTCAATTGG
GTCAGTTGCA TTTAATTCAG TTGGCTTGAC CACGGCAATT AGATATTCAT
TCTCTAGAAA ACAATTCCAA GGTTCAGATC CAAAATTCGA GAAACAATTA
ATATCCTATT CCTCGCATAG AAAACGTTTA ATTCCACATT TGGCAAACAC
CTACGCCACC CATTTCTCAA ATAATTATCT ATTGGATTTA TTGTCTGAAA
AAGAGAAAAA GGAGAAGGAA ATTCATATTT TAGCATCGGC TTTAAAGGCT
TATAGTTCTT GGTCAACTCG TGATTGTCTT CA-------- --GAAAGAAT
CCACCAACAG ATTATCAACA ACCTTCAAAT GAACAAAAAC AAAGANCTGA
TAGAAATTAC ATTAGATCTT TCGATTTCTT ATTGGAAGCT TTAAATTCAA
GATTAAATCA AACCATTCAA TATGTAACTG AGAAATTAAG TGATTCCGTC
TCTGAAGGTT CTGCAATTAT GGACGCTTGG AATGATAATG GTACCTATAT
CGTTCGTTTA GGTGTTGCTT ATACTGAAAA AACTATCCTC GATAAATTCA
TTGCCGCTGT TAACAATTAT CCTGATGAAA ACACTAGAAA TGCTCTCAAA
CTTTTAGTTT CACTCTATGT ATTAAATATT ATAGATCGTG ATAATTGGTT
CTTAAAATAT CAATTCATCT CACCTCAACA ATCTGAATCA ATTTCAATTC
AAATCTTAGA ACTTTGTAAA GAAATTGTTC CTTATTCAAT ATCTTTAACT
GATGCTTAGG TTTTGAT

Translated Amino Acid Sequence VFH322

FIGGSAKNATHTIIMAQLKVSGKMEGVHAFVARIRNDDGSLVKGVDIRDCGVKMALNGVD
NGRIMFKDLHIPRDQLLNRFGGVNRAGIYTSPINPANKRFANTIGALVLGRYIVSIGSVA
FNSVGLTTAIRYSFSRKQFQGSDPKFEKQLISYSSHRKRLIPHLANTYATHFSNNYLLDL
LSEKEKKEKEIHILASALKAYSSWSTRDCL---

---KNPPTDYQQPSNEQKQRXDRNYIRSFDFLLEALNSRLNQTIQYVTEKLSDSVSEGSA
IMDAWNDNGTYIVRLGVAYTEKTILDKFIAAVNNYPDENTRNALKLLVSLYVLNIIDRDN
WFLKYQFISPQQSESISIQILELCKEIVPYSISLTDA*vl

Homology VFH322 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFH322 (VFH322Q) /CSM/VF/VFH3-A/VFH322Q.Seq.d/                       2149   0.0
VFD158 (VFD158Q) /CSM/VF/VFD1-C/VFD158Q.Seq.d/                       1090   0.0
VFN377 (VFN377Q) /CSM/VF/VFN3-D/VFN377Q.Seq.d/                       1031   0.0
SFH389 (SFH389Q) /CSM/SF/SFH3-D/SFH389Q.Seq.d/                        922   0.0
SLK411 (SLK411Q) /CSM/SL/SLK4-A/SLK411Q.Seq.d/                        662   0.0
FC-IC0942 (FC-IC0942Q) /CSM/FC-IC/FC-IC0942Q.Seq.d/                   613   e-174
VHF315 (VHF315Q) /CSM/VH/VHF3-A/VHF315Q.Seq.d/                        525   e-148
VHN395 (VHN395Q) /CSM/VH/VHN3-D/VHN395Q.Seq.d/                        507   e-142
SFL476 (SFL476Q) /CSM/SF/SFL4-D/SFL476Q.Seq.d/                         42   0.018
SFI479 (SFI479Q) /CSM/SF/SFI4-D/SFI479Q.Seq.d/                         40   0.071

Homology VFH322 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 ma...  1245   0.0    1
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 ma...  1245   0.0    1
CF027735|CF027735.1 QCB24g12.yg QCB Zea mays cDNA clone QCB2...    34   0.024  3
CF026667|CF026667.1 QCB10d02.yg QCB Zea mays cDNA clone QCB1...    32   0.056  3
CA149097|CA149097.1 SCJLRZ1023A06.g RZ1 Saccharum officinaru...    32   0.064  3
CF027842|CF027842.1 QCB2c01.yg QCB Zea mays cDNA clone QCB2c...    32   0.067  3
CF027785|CF027785.1 QCB25e02.yg QCB Zea mays cDNA clone QCB2...    32   0.073  3
CF026740|CF026740.1 QCB11d07.yg QCB Zea mays cDNA clone QCB1...    32   0.073  3
CF028086|CF028086.1 QCB5d05.yg QCB Zea mays cDNA clone QCB5d...    32   0.073  3
CF028070|CF028070.1 QCB5b09.yg QCB Zea mays cDNA clone QCB5b...    32   0.075  3

Homology VFH322 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC117081_72(AC117081|pid:none) Dictyostelium discoideum chromoso...   399   e-109
GU443964_8(GU443964|pid:none) Trifolium repens clone BAC 88n22 m...   145   2e-40
(Q9LLH9) RecName: Full=Acyl-coenzyme A oxidase 3, peroxisomal;  ...   167   7e-40
EU973313_1(EU973313|pid:none) Zea mays clone 396607 acyl-coenzym...   167   7e-40
AF207994_1(AF207994|pid:none) Arabidopsis thaliana acyl-CoA oxid...   167   7e-40
CP002830_2848(CP002830|pid:none) Myxococcus fulvus HW-1, complet...   158   4e-37
AK375267_1(AK375267|pid:none) Hordeum vulgare subsp. vulgare mRN...   154   8e-36
(Q9LMI7) RecName: Full=Putative acyl-coenzyme A oxidase 3.2, per...   153   2e-35
CP002271_7116(CP002271|pid:none) Stigmatella aurantiaca DW4/3-1,...   152   2e-35
AP011115_1718(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...   152   4e-35

Homology VFH322 vs Genome