Dictyostelium discoideum cDNA Clone VFH286

Sequence VFH286

TAAAAAAATA AACTCATGTA CATATAAAAA TTAAAATAAA AGAAAAAAAA
ATGAAAAGGA CGATAATAAT ATTATTATTT GTATCATTAT TTGTAACATT
TGTTTTATCA CAAATACCAG ATAATGATCC AGAATTATGT CAACAAAGAA
TTCAAAGAGA GGATTGTCCA CAAACACCAG TACCATGGGG AACATTCAAT
GACAATGACG AAATCGAAGT CTACTATATG CAAGCACCAG TTTTCGAAGC
AGTTTTTGGA AATTTCTTTG GTAAGTTGGG TGGATATCAT TCAGCAATTG
GTTTCTATGA CCTTACAACT GGTTTAAATT ATACAGCAGA ATATGATGCT
TTCTTTGAAG TAGGAAATGG TACATTACCA AATATCATAA ATGTCGATGG
TAAAGATGAA CTTTTATGGT GTAATGCTGG TATCCTTTGT ACTGTTCCAT
ACATTAATGA AACTTATTGG GATAAAAACA TCTATTCAAC TGCTTCAAAA
ACTTAT---- ------ANAA ATTAAANAAG GCNCAATTGC CCAAATCNTT
GAAANAATTT TATCAATCNT TGGTTTAAAN AAANATATTT ACGTTCAAGG
TGAATATTNT TTATTANAAT TAAATTATCC NTTTATGAAT GCAAAATATG
ATTATNTCNC NTTACCAGGT TGGCCAGCAA ATGGNATCGA TTATGAAAAT
GGCNATTTTA TTCATCCCAA TTAGATTATT TTAAAATTAG ATTATTTTAA
ATTAAATTGG TTATAAATAA AAACNAAAAA CNAAAATAAT AAAAAAAAAA
TNNCTTTTTT TTTTAA

Translated Amino Acid Sequence VFH286

kk*THVHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPQTPV
PWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEV
GNGTLPNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTY---

---XIKXGXIAQIXEXILSIXGLXKXIYVQGEYXLLXLNYPFMNAKYDYXXLPGWPANGI
DYENGXFIHPN*iilkldyfklnwl*iktknxnnkkkxxfff

Homology VFH286 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFH286 (VFH286Q) /CSM/VF/VFH2-D/VFH286Q.Seq.d/                       1128   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        890   0.0
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                        890   0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                        890   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        890   0.0
SSA660 (SSA660Q) /CSM/SS/SSA6-C/SSA660Q.Seq.d/                        890   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        862   0.0
SSB231 (SSB231Q) /CSM/SS/SSB2-B/SSB231Q.Seq.d/                        821   0.0
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        769   0.0
SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/                        676   0.0

Homology VFH286 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 ma...   890   0.0    7
AC123538|AC123538.3 Sminthopsis macroura clone 79G10, comple...    42   0.003  4
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 ma...    44   0.008  7
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  52   0.013  1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   0.097  12
BX324188|BX324188.6 Zebrafish DNA sequence *** SEQUENCING IN...    38   0.13   6
AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 ma...    42   0.18   4
AC133307|AC133307.2 Rattus norvegicus clone CH230-269I2, WOR...    48   0.20   1
AC126501|AC126501.4 Rattus norvegicus clone CH230-206K3, WOR...    48   0.20   1
BH334420|BH334420.1 CH230-110K10.TJ CHORI-230 Segment 1 Ratt...    48   0.20   1

Homology VFH286 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   289   1e-76
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   289   1e-76
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...    79   4e-13
AB528107_1(AB528107|pid:none) Synthetic construct DNA, clone: pF...    79   4e-13
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...    79   4e-13
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    77   1e-12
AH014663_1(AH014663|pid:none) Canis lupus familiaris CLN5 (CLN5)...    77   1e-12
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    77   1e-12
(Q5JZQ9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    77   1e-12
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    76   2e-12

Homology VFH286 vs Genome