Homology VFF438 vs Protein
Query= VFF438 (VFF438Q) /CSM/VF/VFF4-B/VFF438Q.Seq.d/
(1248 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54KD1) RecName: Full=Probable lysosomal cobalamin transporter;... 287 8e-76
(A7RM45) RecName: Full=Probable lysosomal cobalamin transporter; 94 1e-17
(Q5ZI05) RecName: Full=Probable lysosomal cobalamin transporter;... 87 2e-15
BC044020_1(BC044020|pid:none) Xenopus laevis Probable lysosomal ... 86 4e-15
(Q7SYR6) RecName: Full=Probable lysosomal cobalamin transporter;... 86 4e-15
(Q5PR61) RecName: Full=Probable lysosomal cobalamin transporter;... 85 1e-14
(Q0VGV9) RecName: Full=Probable lysosomal cobalamin transporter;... 84 1e-14
(Q4R5E3) RecName: Full=Probable lysosomal cobalamin transporter;... 84 2e-14
(Q8K0B2) RecName: Full=Probable lysosomal cobalamin transporter;... 84 2e-14
CT025894_3(CT025894|pid:none) Zebrafish DNA sequence from clone ... 82 6e-14
(Q3SYY9) RecName: Full=Probable lysosomal cobalamin transporter;... 82 8e-14
AY093598_1(AY093598|pid:none) Rattus norvegicus p53-related prot... 81 1e-13
(B0YA61) RecName: Full=Probable lysosomal cobalamin transporter;... 73 3e-11
(Q0UUE1) RecName: Full=Probable lysosomal cobalamin transporter; 73 4e-11
(A1DB12) RecName: Full=Probable lysosomal cobalamin transporter; 72 5e-11
(Q5BDG8) RecName: Full=Probable lysosomal cobalamin transporter; 72 5e-11
(B2AA26) RecName: Full=Probable lysosomal cobalamin transporter;... 71 1e-10
AM910994_157(AM910994|pid:none) Plasmodium knowlesi strain H chr... 70 2e-10
(Q2HDJ0) RecName: Full=Probable lysosomal cobalamin transporter; 70 3e-10
FP929127_163(FP929127|pid:none) Leptosphaeria maculans JN3 lm_Su... 68 1e-09
(A6RN41) RecName: Full=Probable lysosomal cobalamin transporter; 68 1e-09
(A6QTW5) RecName: Full=Probable lysosomal cobalamin transporter; 67 2e-09
(Q1E5A9) RecName: Full=Probable lysosomal cobalamin transporter; 65 6e-09
CP003013_427(CP003013|pid:none) Thielavia terrestris NRRL 8126 c... 65 1e-08
(A1C3U0) RecName: Full=Probable lysosomal cobalamin transporter; 65 1e-08
(A4RE85) RecName: Full=Probable lysosomal cobalamin transporter; 62 9e-08
(Q2TZ20) RecName: Full=Probable lysosomal cobalamin transporter;... 61 1e-07
FR823392_112(FR823392|pid:none) Neospora caninum Liverpool compl... 55 6e-06
AM494962_114(AM494962|pid:none) Leishmania braziliensis chromoso... 49 5e-04
HE573019_81(HE573019|pid:none) Trypanosoma vivax Y486 annotated ... 49 6e-04
CR954213_50(CR954213|pid:none) Ostreococcus tauri strain OTTH059... 48 0.001
CP001330_522(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 46 0.005
CP000593_44(CP000593|pid:none) Ostreococcus lucimarinus CCE9901 ... 45 0.009
FR824071_11(FR824071|pid:none) Albugo laibachii Nc14, genomic co... 43 0.033
BT033705_1(BT033705|pid:none) Zea mays full-length cDNA clone ZM... 42 0.056
(Q658I5) RecName: Full=LIMR family protein Os06g0128200; &AK068... 42 0.074
AK354070_1(AK354070|pid:none) Hordeum vulgare subsp. vulgare mRN... 42 0.074
AP000391_4(AP000391|pid:none) Oryza sativa Japonica Group genomi... 42 0.074
AM502243_120(AM502243|pid:none) Leishmania infantum chromosome 2... 40 0.37
(Q54BI3) RecName: Full=LIMR family protein DDB_G0293610; 40 0.37
CP002177_3020(CP002177|pid:none) Acinetobacter calcoaceticus PHE... 40 0.37
CP002080_3751(CP002080|pid:none) Acinetobacter sp. DR1, complete... 39 0.62
FR799612_120(FR799612|pid:none) Leishmania donovani BPK282A1 com... 39 0.82
CT005264_119(CT005264|pid:none) Leishmania major strain Friedlin... 38 1.1
FN554971_241(FN554971|pid:none) Trypanosoma brucei gambiense DAL... 37 1.8
HE576760_139(HE576760|pid:none) Naumovozyma castellii CBS 4309 c... 37 1.8
CP001100_1700(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 37 1.8
CP001390_3065(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 36 4.0
AK003084_1(AK003084|pid:none) Mus musculus adult male spleen cDN... 36 5.3
AL117207_16(AL117207|pid:none) Caenorhabditis elegans YAC Y60A3A... 36 5.3
(O67472) RecName: Full=Uncharacterized protein aq_1502; &AE0006... 35 6.9
L07545_1(L07545|pid:none) Leishmania tarentolae kinetoplast mito... 35 9.0
>(Q54KD1) RecName: Full=Probable lysosomal cobalamin transporter;
AltName: Full=LMBR1 domain-containing protein 1 homolog;
Length = 510
Score = 287 bits (735), Expect = 8e-76
Identities = 145/176 (82%), Positives = 145/176 (82%)
Frame = +3
Query: 669 CGSACGFLSTYPQLKNPFDIILTKLAPYFPXXXXXXXXXXXXXXSCTLSGITRIGIRFLW 848
CGSACGFLSTYPQLKNPFDIILTKLAPYFP SCTLSGITRIGIRFLW
Sbjct: 322 CGSACGFLSTYPQLKNPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFLW 381
Query: 849 INMFEFGYRKTFPQGXXXXXXXXXXXXXXXXXQIVNLAPRYVMYGAQVYLNGTSVIPCTI 1028
INMFEFGYRKTFPQG QIVNLAPRYVMYGAQVYLNGTSVIPCTI
Sbjct: 382 INMFEFGYRKTFPQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTI 441
Query: 1029 NAPTDLCIMSEIGLLTSRIQLGISFFGIVFYYGTWVIVATFILGLAVSIFKRRPSA 1196
NAPTDLCIMSEIGLLTSRIQLGISFFGIVFYYGTWVIVATFILGLAVSIFKRRPSA
Sbjct: 442 NAPTDLCIMSEIGLLTSRIQLGISFFGIVFYYGTWVIVATFILGLAVSIFKRRPSA 497
Score = 275 bits (702), Expect = 5e-72
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 142 MFPISVGWIAFAGVLLTLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVD 321
MFPISVGWIAFAGVLLTLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVD
Sbjct: 1 MFPISVGWIAFAGVLLTLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVD 60
Query: 322 ILNVSTMSHSDGTQISPYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENI 501
ILNVSTMSHSDGTQISPYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENI
Sbjct: 61 ILNVSTMSHSDGTQISPYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENI 120
Query: 502 PTCSRVYAGCKFTIFF 549
PTCSRVYAGCKFTIFF
Sbjct: 121 PTCSRVYAGCKFTIFF 136
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 3,032,840,083
Number of extensions: 57387571
Number of successful extensions: 148108
Number of sequences better than 10.0: 52
Number of HSP's gapped: 147924
Number of HSP's successfully gapped: 78
Length of query: 416
Length of database: 1,732,582,204
Length adjustment: 134
Effective length of query: 282
Effective length of database: 1,015,787,662
Effective search space: 286452120684
Effective search space used: 286452120684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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