Dictyostelium discoideum cDNA Clone VFF438

Sequence VFF438

TGGCCTACTG GGCAATTGTT TCCCAAAATT ACACACACCA CAAAAATAAA
AGAGATAAGA AAAACAGAAA AAATAAAAAA TAAAAAAAAC TCTATATAAA
ATTCTTATTT ATATATAAAT AAAACAAAAG TAAAAAAAAG AATGTTTCCC
ATTTCAGTAG GGTGGATAGC ATTTGCAGGT GTTCTTCTCA CGTTAATTGC
ATTAAATTAT TTTATAGTTA AATATTACTC AGATAAACAT GAAAGTGGAA
AAATTACAAC AATCATTTCA GTAATTGGAC TTACATTAAC ACTTTTATGT
GTTATGCTTA TTCCAGTTGA TATTTTAAAT GTTTCAACAA TGTCACATAG
TGATGGTACA CAAATTTCAC CATATTCAAT CTCTCAAAGA ACTGAAGGTG
TTAAAATGTT ATATTATATA TTATATGGAT CAATTTTAGG AGTTTCACTA
ATTTTAGTAC CATTTGCATA TTTTTATCAT GAAGAATATG ATGAAAATAT
TCCAACATGT TCAAGAGTTT ATGCAGGATG TAAATTTACA ATATTTTTC-
---------C ATCTTTAGAC CATTTGCATT CATTTTTGGT TTCATCTTTA
TCTTGGTCTC TTTATTGATC ATTATCTCCA TCGTCTTATC GTTGGTCGAT
AAAATCTCAA GTAGTGTCTG TGGTTCGGCT TGCGGTTTCC TTTCAACTTA
TCCACAATTG AAAAATCCAT TCGATATCAT TCTCACCAAA TTGGCCCCAT
ATTTCCCATT GGATTATATC ATTATTGGTG GTTTAATATT TTTCATTTAT
TCTTGTACTT TATCTGGTAT CACTAGAATT GGTATTAGAT TTTTATGGAT
TAATATGTTT GAATTTGGAT ATCGTAAAAC TTTCCCACAA GGTTTATTAC
TTGCATCAGT GTTATTAATG TTAAGTAATT TATGTTTAAA TATGCAAATT
GTAAATTTAG CACCAAGATA TGTTATGTAT GGTGCTCAAG TCTATTTGAA
TGGTACTTCA GTTATACCAT GTACAATTAA TGCACCAACA GATCTTTGTA
TTATGTCAGA AATTGGTCTT TTAACTTCAC GTATTCAATT AGGTATTTCT
TTCTTTGGTA TTGTATTTTA TTATGGTACT TGGGTAATTG TTGCAACTTT
TATTTTAGGT TTAGCTGTTT CAATATTTAA AAGAAGACCA TCTGCGCTTT
AAGTTATTCG GNATAGNANA AGAAGAGATT TAAAAATAAA TAAATAAT

Translated Amino Acid Sequence VFF438

wptgqlfpkithttkikeirktekiknkknsi*NSYLYINKTKVKKRMFPISVGWIAFAG
VLLTLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGT
QISPYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENIPTCSRVYAGCKFT
IFF---

---IFRPFAFIFGFIFILVSLLIIISIVLSLVDKISSSVCGSACGFLSTYPQLKNPFDII
LTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFLWINMFEFGYRKTFPQGLLLASV
LLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTINAPTDLCIMSEIGLLTSRIQL
GISFFGIVFYYGTWVIVATFILGLAVSIFKRRPSAL*virxxxrrdlkink*

Homology VFF438 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFF438 (VFF438Q) /CSM/VF/VFF4-B/VFF438Q.Seq.d/                       2173   0.0
SFH228 (SFH228Q) /CSM/SF/SFH2-B/SFH228Q.Seq.d/                       1338   0.0
AFC356 (AFC356Q) /CSM/AF/AFC3-C/AFC356Q.Seq.d/                       1326   0.0
CFH203 (CFH203Q) /CSM/CF/CFH2-A/CFH203Q.Seq.d/                       1320   0.0
CFC228 (CFC228Q) /CSM/CF/CFC2-B/CFC228Q.Seq.d/                       1320   0.0
AFN155 (AFN155Q) /CSM/AF/AFN1-C/AFN155Q.Seq.d/                       1320   0.0
SFJ506 (SFJ506Q) /CSM/SF/SFJ5-A/SFJ506Q.Seq.d/                       1289   0.0
CFF416 (CFF416Q) /CSM/CF/CFF4-A/CFF416Q.Seq.d/                       1289   0.0
CFC519 (CFC519Q) /CSM/CF/CFC5-A/CFC519Q.Seq.d/                       1287   0.0
AFM283 (AFM283Q) /CSM/AF/AFM2-D/AFM283Q.Seq.d/                       1285   0.0

Homology VFF438 vs DNA

Sequences producing significant alignments:                    (bits)  Value  N


AX344565|AX344565.1 Sequence 16 from Patent WO0200932.            38  3e-06  9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, ...    34  3e-05  14
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12...    36  7e-04  7
AC021132|AC021132.5 Homo sapiens chromosome 8 clone RP11-38...    42  0.002  7
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14...    38  0.002  7
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCIN...    50  0.002  7
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chrom...    36  0.002  7
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clo...    34  0.002  9
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14...    34  0.003  9
AC055711|AC055711.18 Homo sapiens 3 BAC RP11-67E18 (Roswell...    40  0.003  8

Homology VFF438 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54KD1) RecName: Full=Probable lysosomal cobalamin transporter;...   287   7e-76
(A7RM45) RecName: Full=Probable lysosomal cobalamin transporter;       94   1e-17
(Q5ZI05) RecName: Full=Probable lysosomal cobalamin transporter;...    87   2e-15
BC044020_1(BC044020|pid:none) Xenopus laevis Probable lysosomal ...    86   4e-15
(Q7SYR6) RecName: Full=Probable lysosomal cobalamin transporter;...    86   4e-15
(Q5PR61) RecName: Full=Probable lysosomal cobalamin transporter;...    85   9e-15
(Q0VGV9) RecName: Full=Probable lysosomal cobalamin transporter;...    84   1e-14
(Q4R5E3) RecName: Full=Probable lysosomal cobalamin transporter;...    84   2e-14
(Q8K0B2) RecName: Full=Probable lysosomal cobalamin transporter;...    84   2e-14
CT025894_3(CT025894|pid:none) Zebrafish DNA sequence from clone ...    82   6e-14

Homology VFF438 vs Genome