Dictyostelium discoideum cDNA Clone VFF417

Sequence VFF417

CTTCTAAACA ACAATAACAA TATGAGTCAT CGTAAATTTG AAGCTCCACG
TCACGGTAAT CTCGGTTTCA GACCAAGAAA GAGAGCCGCC AGACATCAAG
GTAAAGTCAA GTCATTCCCA AAGGATGACC GTACCCAAAA AGTCCACTTA
ACTGCATTCA TGGGTTACAA AGCTGGTATG ACTCACGTTG TCAGAGATTT
AGAAAAACCA GGTTCAAAGA TGCACAAAAA AGAAATCGTT GAAGCCGTCA
CCATCATTGA ATGTCCACCA ATGTACATTG TTGGTTTAGT TGGTTATGTT
GAAACCGCTC AAGGTCTCAA AACCTACAAA ACCGTCTGGG CTCAACATTT
AAGTGATAAC TTCCGTAGAA GATTATACAA AAACTGGTAC AAATCAAAAT
CAAAGAAAGC TTTCACCAAA TACGTTAAAC AATACGAAAC TGAAGAAGGT
AAAAAATCAA TTGAAGCCTC TCTCCAAGCC ATCAAAAAGA GATGTTCAGT
CGTCCGTGTC ATTGCTCACA CTCAAGTTCA CAAATTAAAA TTAACTCAAA
AGAAAGCACA CGTCCTTGAA ATCCAAGTCA ATGGTGGTTC AATCGTCGAA
AAAGTTAACT TTGCTGTTGC CAACTTTGAA AAGACCGTCA ACGTCACTGG
TGTCTTTGCC GAAAATGAAT TAATCGATGT TATCGGTGTA ACCAAAGGTA
AAGGTTTCAA TGGTGTCATT AAAAGATGGG GTGTCCGTAA ATTACCAAGA
AAGACCCATA AAGGTTTAAG AAAGGTTGCC TGTATTGGTG CATGGCATCC
ATCCCGTGTT AGTACCACCG TCCCAAGAGC TGGTCAACTC GGTTACCATC
ATCGTGTCGA AAGAAACAAG AAGATTTACA GAATCGGTCA AGCTCAACCA
GAAGACGGTA AACAAATCTC AACCGGTAAG ACTGAATTCG ATTTAACTGA
AAAGACTATC AATCCAATGG GTGGTTTCGC TCACTACGGT ATGGTTAAAC
ATGAATTCTT AATGCTTAAA GGTTGTGTTG CTGGTCCAAG AAAGAGAGCC
TTAACCTTAA GAAAGAGTAT CACCACTCAA ACTGGTCGTG CTGCCCTCGA
GAAAATCACT CTCAAATTCA TCGATACCTC CAGCAAGTTT GGTCACGGTC
TTCATCAAAC CGCTGAAGAT AAGACTAAAT ATTTCGGCGT CAAGAAATCA
AGATCAACTA AGGCTTAAAT TCAATAAATT AGATTTCAGA GAGTTATCAA
ACA

Translated Amino Acid Sequence VFF417

LLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGM
THVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDN
FRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK
LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVI
KRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQP
EDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQ
TGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvik

Homology VFF417 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VFF417 (VFF417Q) /CSM/VF/VFF4-A/VFF417Q.Seq.d/                       2484   0.0
VFC883 (VFC883Q) /CSM/VF/VFC8-D/VFC883Q.Seq.d/                       2484   0.0
VFF634 (VFF634Q) /CSM/VF/VFF6-B/VFF634Q.Seq.d/                       2476   0.0
VFC683 (VFC683Q) /CSM/VF/VFC6-D/VFC683Q.Seq.d/                       2476   0.0
VFL835 (VFL835Q) /CSM/VF/VFL8-B/VFL835Q.Seq.d/                       2462   0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                       2456   0.0
VFG417 (VFG417Q) /CSM/VF/VFG4-A/VFG417Q.Seq.d/                       2456   0.0
VFE336 (VFE336Q) /CSM/VF/VFE3-B/VFE336Q.Seq.d/                       2456   0.0
CFF138 (CFF138Q) /CSM/CF/CFF1-B/CFF138Q.Seq.d/                       2452   0.0
VFD837 (VFD837Q) /CSM/VF/VFD8-B/VFD837Q.Seq.d/                       2450   0.0

Homology VFF417 vs DNA

Sequences producing significant alignments:                    (bits)  Value  N


L08391|L08391.1 Dictyostelium discoideum ribosomal protein ...  1980  0.0  3
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728.         78  1e-47  10
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame OR...    70  5e-35  8
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene.    62  3e-34  8
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb reg...    70  6e-27  9
BE641342|BE641342.1 Cri2_3_A04_SP6 Ceratopteris Spore Libra...    76  1e-21  3
AL424946|AL424946.1 clone BA0AB002D01 of library BA0AB from...    66  3e-19  5
AX765804|AX765804.1 Sequence 13 from Patent WO03008440.           74  4e-19  4
AY052743|AY052743.1 Arabidopsis thaliana At1g43170/F1I21_18...    74  4e-19  4
AF361101|AF361101.1 Arabidopsis thaliana putative ribosomal...    74  4e-19  4

Homology VFF417 vs Protein

Sequences producing significant alignments:                      (bits) Value


(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   805   0.0
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407....   544   e-153
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L...   542   e-152
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib...   541   e-152
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   540   e-152
AM452874_1(AM452874|pid:none) Vitis vinifera contig VV78X187512....   538   e-151
EF146052_1(EF146052|pid:none) Populus trichocarpa clone WS0115_D...   538   e-151
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   537   e-151
EF145479_1(EF145479|pid:none) Populus trichocarpa clone WS01125_...   536   e-150
AC125473_1(AC125473|pid:none) Medicago truncatula clone mth2-8j1...   535   e-150

Homology VFF417 vs Genome