Homology VFE696 vs Protein
Query= VFE696 (VFE696Q) /CSM/VF/VFE6-D/VFE696Q.Seq.d/
(907 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EU961854_1(EU961854|pid:none) Zea mays clone 238674 actin-relate... 140 1e-31
AK073919_1(AK073919|pid:none) Oryza sativa Japonica Group cDNA c... 138 4e-31
AJ720885_1(AJ720885|pid:none) Gallus gallus mRNA for hypothetica... 134 7e-30
EF678447_1(EF678447|pid:none) Picea sitchensis clone WS02921_O12... 131 4e-29
BC073411_1(BC073411|pid:none) Xenopus laevis MGC80877 protein, m... 131 6e-29
EF011872_1(EF011872|pid:none) Xenopus laevis actin-related prote... 129 2e-28
BC076887_1(BC076887|pid:none) Xenopus tropicalis actin related p... 128 4e-28
BC071519_1(BC071519|pid:none) Danio rerio zgc:86896, mRNA (cDNA ... 128 5e-28
A84719(A84719) probable ARP2/3 protein complex subunit p41 [impo... 128 5e-28
BC155744_1(BC155744|pid:none) Danio rerio zgc:86896, mRNA (cDNA ... 128 5e-28
EU868834_1(EU868834|pid:none) Sus scrofa actin related protein 2... 127 6e-28
BC053229_1(BC053229|pid:none) Danio rerio actin related protein ... 125 2e-27
(Q9WV32) RecName: Full=Actin-related protein 2/3 complex subunit... 124 7e-27
(O15143) RecName: Full=Actin-related protein 2/3 complex subunit... 124 7e-27
AF162768_1(AF162768|pid:none) Mus musculus actin-related protein... 124 7e-27
(O88656) RecName: Full=Actin-related protein 2/3 complex subunit... 123 2e-26
BC010275_1(BC010275|pid:none) Mus musculus actin related protein... 122 2e-26
AP007155_21(AP007155|pid:none) Aspergillus oryzae RIB40 DNA, SC0... 122 2e-26
CP002685_3068(CP002685|pid:none) Arabidopsis thaliana chromosome... 122 3e-26
AL110501_9(AL110501|pid:none) Caenorhabditis elegans YAC Y79H2A,... 120 8e-26
BT025344_1(BT025344|pid:none) Bos taurus actin related protein 2... 120 8e-26
BT021895_1(BT021895|pid:none) Bos taurus actin related protein 2... 120 8e-26
AB170082_1(AB170082|pid:none) Macaca fascicularis brain cDNA clo... 120 1e-25
(Q1JP79) RecName: Full=Actin-related protein 2/3 complex subunit... 120 1e-25
(Q92747) RecName: Full=Actin-related protein 2/3 complex subunit... 120 1e-25
GU587819_1(GU587819|pid:none) Ictalurus furcatus clone CBFH24310... 120 1e-25
CU633438_777(CU633438|pid:none) Podospora anserina S mat+ genomi... 119 2e-25
BT059772_1(BT059772|pid:none) Salmo salar clone ssal-rgf-504-351... 119 2e-25
EU868833_1(EU868833|pid:none) Sus scrofa actin related protein 2... 119 3e-25
AY398313_1(AY398313|pid:none) Danio rerio clone RK123A4B01 actin... 118 5e-25
GU588883_1(GU588883|pid:none) Ictalurus punctatus clone CBZB7683... 117 6e-25
AK297111_1(AK297111|pid:none) Homo sapiens cDNA FLJ57124 complet... 116 1e-24
CP003002_422(CP003002|pid:none) Myceliophthora thermophila ATCC ... 116 2e-24
FQ790278_216(FQ790278|pid:none) Botryotinia fuckeliana isolate T... 115 2e-24
(P78774) RecName: Full=Actin-related protein 2/3 complex subunit... 115 2e-24
EF676961_1(EF676961|pid:none) Picea sitchensis clone WS02759_A13... 115 3e-24
FR824075_33(FR824075|pid:none) Albugo laibachii Nc14, genomic co... 114 9e-24
AY763110_1(AY763110|pid:none) Bombyx mori SOP2 (sop2) mRNA, comp... 110 1e-22
AE017346_96(AE017346|pid:none) Cryptococcus neoformans var. neof... 109 2e-22
CP000291_372(CP000291|pid:none) Cryptococcus gattii WM276 chromo... 109 2e-22
CR382128_693(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 108 5e-22
AE014134_2707(AE014134|pid:none) Drosophila melanogaster chromos... 106 2e-21
BT080765_1(BT080765|pid:none) Caligus clemensi clone ccle-evs-50... 106 2e-21
BT080432_1(BT080432|pid:none) Caligus clemensi clone ccle-evs-52... 106 2e-21
FQ311442_101(FQ311442|pid:none) Sporisorium reilianum SRZ2 chrom... 100 1e-19
EZ423332_1(EZ423332|pid:none) TSA: Glossina morsitans morsitans ... 100 1e-19
FN392320_978(FN392320|pid:none) Pichia pastoris GS115 chromosome... 97 9e-19
CR382138_578(CR382138|pid:none) Debaryomyces hansenii strain CBS... 97 2e-18
CP000500_463(CP000500|pid:none) Scheffersomyces stipitis CBS 605... 93 2e-17
HE605206_493(HE605206|pid:none) Candida parapsilosis strain CDC3... 92 3e-17
BC061418_1(BC061418|pid:none) Xenopus tropicalis hypothetical pr... 92 4e-17
AB568464_1(AB568464|pid:none) Ostrinia nubilalis mRNA for suppre... 88 5e-16
CU928180_253(CU928180|pid:none) Kluyveromyces thermotolerans str... 88 7e-16
FN393060_344(FN393060|pid:none) Saccharomyces cerevisiae EC1118 ... 87 1e-15
HE576755_328(HE576755|pid:none) Naumovozyma castellii CBS 4309 c... 87 1e-15
BT072725_1(BT072725|pid:none) Salmo salar clone ssal-rgf-538-041... 86 2e-15
(P38328) RecName: Full=Actin-related protein 2/3 complex subunit... 86 3e-15
HE612865_183(HE612865|pid:none) Tetrapisispora phaffii CBS 4417 ... 85 5e-15
AB099030_1(AB099030|pid:none) Bos taurus mRNA for similar to act... 85 6e-15
FQ857250_41(FQ857250|pid:none) Piriformospora indica PIRI_contig... 84 1e-14
FN554973_1576(FN554973|pid:none) Trypanosoma brucei gambiense DA... 83 2e-14
CU928175_612(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 83 2e-14
HE580275_135(HE580275|pid:none) Naumovozyma dairenensis CBS 421 ... 80 1e-13
FN367835_1(FN367835|pid:none) Schistosoma mansoni genome sequenc... 77 1e-12
CR382126_461(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 75 6e-12
DQ985462_1(DQ985462|pid:none) Suberites domuncula actin related ... 64 1e-08
EU714182_1(EU714182|pid:none) Epinephelus coioides actin-related... 58 6e-07
D89122_1(D89122|pid:none) Schizosaccharomyces pombe mRNA, partia... 58 8e-07
BC059131_1(BC059131|pid:none) Rattus norvegicus actin related pr... 55 4e-06
AB173781_1(AB173781|pid:none) Macaca fascicularis brain cDNA clo... 54 1e-05
CP001738_3085(CP001738|pid:none) Thermomonospora curvata DSM 431... 45 0.007
CP000820_3699(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 40 0.13
CP002905_1634(CP002905|pid:none) Bacillus subtilis subsp. spiziz... 40 0.17
CP002183_1461(CP002183|pid:none) Bacillus subtilis subsp. spiziz... 40 0.17
AM494961_234(AM494961|pid:none) Leishmania braziliensis chromoso... 40 0.17
AM502242_165(AM502242|pid:none) Leishmania infantum chromosome 2... 40 0.22
CT005257_92(CT005257|pid:none) Leishmania major strain Friedlin ... 39 0.29
CP002994_8092(CP002994|pid:none) Streptomyces violaceusniger Tu ... 39 0.38
FR799571_92(FR799571|pid:none) Leishmania mexicana MHOM/GT/2001/... 39 0.38
HE573024_551(HE573024|pid:none) Trypanosoma vivax Y486 annotated... 39 0.38
BX897678_12(BX897678|pid:none) Neurospora crassa DNA linkage gro... 39 0.38
FR799577_233(FR799577|pid:none) Leishmania mexicana MHOM/GT/2001... 39 0.50
FN554971_613(FN554971|pid:none) Trypanosoma brucei gambiense DAL... 38 0.65
(Q9SU78) RecName: Full=WD-40 repeat-containing protein MSI5; &A... 38 0.85
FQ857274_7(FQ857274|pid:none) Piriformospora indica PIRI_contig_... 38 0.85
AP011541_1607(AP011541|pid:none) Bacillus subtilis subsp. natto ... 38 0.85
HE575321_552(HE575321|pid:none) Trypanosoma congolense IL3000 an... 38 0.85
AL079344_24(AL079344|pid:none) Arabidopsis thaliana DNA chromoso... 38 0.85
AM746676_2689(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 38 0.85
BA000045_1965(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 38 0.85
CP002801_474(CP002801|pid:none) Frankia symbiont of Datisca glom... 37 1.5
FR798992_97(FR798992|pid:none) Leishmania braziliensis MHOM/BR/7... 37 1.5
AM494955_97(AM494955|pid:none) Leishmania braziliensis chromosom... 37 1.5
CP000828_4370(CP000828|pid:none) Acaryochloris marina MBIC11017,... 37 1.9
CP001700_6797(CP001700|pid:none) Catenulispora acidiphila DSM 44... 37 1.9
CP002994_7723(CP002994|pid:none) Streptomyces violaceusniger Tu ... 37 1.9
CP000806_3916(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 36 2.5
CP002299_5982(CP002299|pid:none) Frankia sp. EuI1c, complete gen... 36 2.5
CP000828_160(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 36 2.5
FQ859082_40(FQ859082|pid:none) Piriformospora indica PIRI_contig... 36 3.2
(O31708) RecName: Full=Uncharacterized ABC transporter ATP-bindi... 36 3.2
AF028711_1(AF028711|pid:none) Arabidopsis thaliana WD-40 repeat ... 36 3.2
AM778930_22(AM778930|pid:none) Microcystis aeruginosa PCC 7806 g... 36 3.2
(O22607) RecName: Full=WD-40 repeat-containing protein MSI4; Alt... 36 3.2
CR940353_254(CR940353|pid:none) Theileria annulata strain Ankara... 36 3.2
CP001630_6258(CP001630|pid:none) Actinosynnema mirum DSM 43827, ... 35 4.2
CP002468_3815(CP002468|pid:none) Bacillus subtilis BSn5, complet... 35 4.2
BT034751_1(BT034751|pid:none) Zea mays full-length cDNA clone ZM... 35 4.2
FQ857320_23(FQ857320|pid:none) Piriformospora indica PIRI_contig... 35 5.5
CP001037_5630(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 35 5.5
AP011615_4118(AP011615|pid:none) Arthrospira platensis NIES-39, ... 35 5.5
FQ857289_21(FQ857289|pid:none) Piriformospora indica PIRI_contig... 35 5.5
AL939118_27(AL939118|pid:none) Streptomyces coelicolor A3(2) com... 35 5.5
(P0CS30) RecName: Full=Probable cytosolic iron-sulfur protein as... 35 7.2
(Q2UBU2) RecName: Full=Protein HIR1; &AP007161_725(AP007161|pid... 35 7.2
CP001291_1144(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 7.2
AY463620_1(AY463620|pid:none) Arabidopsis thaliana TAF5 (At5g251... 35 7.2
CP000699_2655(CP000699|pid:none) Sphingomonas wittichii RW1, com... 35 7.2
AC160012_13(AC160012|pid:none) Medicago truncatula chromosome 2 ... 35 7.2
AM270160_21(AM270160|pid:none) Aspergillus niger contig An08c005... 34 9.4
FN357335_34(FN357335|pid:none) Schistosoma mansoni genome sequen... 34 9.4
>EU961854_1(EU961854|pid:none) Zea mays clone 238674 actin-related
protein 2/3 complex subunit 1B mRNA, complete cds.
Length = 375
Score = 140 bits (352), Expect = 1e-31
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 9/216 (4%)
Frame = +3
Query: 222 HPNNLLLATSSSDYKVRVFDAYIKKADGR-SVTRPYGEVAFGEPVFEFDQCASWVHALKW 398
HPNN+ LATSS+D K RVF +IK D R S + + FGE + + D ++WV ++W
Sbjct: 153 HPNNIYLATSSTDGKCRVFSTFIKGVDTRGSKSSTSTDSKFGEQIAQLDLSSTWVFGVRW 212
Query: 399 SPSGSTLAYSSHDGVFAVANFSTNPPTIEKLRVRNLPLRDLLYITENSIAGVGYDCAPLL 578
SPSG TLAY+ H+ + + + P + L +R+LPLRD+L+++E ++ GVG+DC P++
Sbjct: 213 SPSGKTLAYAGHNSMIYFIDEVESSPVAQNLALRDLPLRDVLFVSERTLIGVGFDCNPMI 272
Query: 579 ITNQNG--WKYSGEMDKXXXXXXXXXXXXXXRKLFQNKVDLGESKSAD-----KKLTTVH 737
+ W + +D+ L + + S+D K H
Sbjct: 273 FAADDTGLWTFIRFLDERKAAPSASKASQLSEALGKLYGQSKQGTSSDTVEPSKPRGGAH 332
Query: 738 QNCITSIVPF-KSVGGVVSDFSTSGLDGNIVVWHVK 842
+NCIT IVP K G + FSTSGLDG IVVW ++
Sbjct: 333 ENCITCIVPLRKGSDGSIKRFSTSGLDGKIVVWDLE 368
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,450,725,310
Number of extensions: 51450414
Number of successful extensions: 139784
Number of sequences better than 10.0: 121
Number of HSP's gapped: 139387
Number of HSP's successfully gapped: 147
Length of query: 302
Length of database: 1,732,582,204
Length adjustment: 131
Effective length of query: 171
Effective length of database: 1,031,835,301
Effective search space: 176443836471
Effective search space used: 176443836471
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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