Homology VFE696 vs DNA
Query= VFE696 (VFE696Q) /CSM/VF/VFE6-D/VFE696Q.Seq.d/
(907 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
new_ddbjhum.seq; ddbjpri.seq; new_ddbjpri.seq; ddbjrod1.seq;
ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq;
new_ddbjrod.seq; ddbjmam.seq; new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; new_ddbjinv.seq;
ddbjpln1.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq;
new_ddbjvrl.seq; ddbjphg.seq; new_ddbjphg.seq; ddbjuna.seq;
new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq; ddbjgss11.seq;
ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq; ddbjgss15.seq;
ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq;
ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq;
ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq;
ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq;
ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq;
ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq;
ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq; ddbjgss40.seq;
ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq;
ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq;
ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss6.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; new_ddbjgss1.seq; new_ddbjgss2.seq;
new_ddbjgss3.seq; new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; new_ddbjhtg1.seq; new_ddbjhtg2.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; new_ddbjsts.seq; ddbjsyn.seq; new_ddbjsyn.seq;
est_atha1.seq; new_est_atha1.seq; est_cele1.seq; new_est_cele1.seq;
est_drer1.seq; new_est_drer1.seq; est_dmel1.seq; new_est_dmel1.seq;
est_gmax1.seq; new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; new_est_hum1.seq; est_lesc1.seq;
new_est_lesc1.seq; est_mous1.seq; est_mous2.seq; est_mous3.seq;
new_est_mous1.seq; est_osat1.seq; new_est_osat1.seq; est_rnor1.seq;
new_est_rnor1.seq; est_xlae1.seq; new_est_xlae1.seq; est_zmay1.seq;
new_est_zmay1.seq; est_rest1.seq; est_rest2.seq; new_est_rest1.seq
25,022,185 sequences; P,692,356,608 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AF095930|AF095930.1 Dictyostelium discoideum p41-Arc (arpD)... 1310 0.0 3
AC094767|AC094767.3 Rattus norvegicus clone CH230-5L7, *** ... 50 0.49 2
AC124472|AC124472.3 Mus musculus chromosome UNK clone RP24-... 46 0.76 1
AJ278435|AJ278435.1 Mus musculus Ranbp7 gene, Staf gene and... 46 0.76 1
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *... 50 1.0 2
AC103107|AC103107.5 Rattus norvegicus clone CH230-30A4, WOR... 44 3.0 1
AP004474|AP004474.1 Lotus corniculatus var. japonicus genom... 38 5.9 4
AC138307|AC138307.1 Mus musculus chromosome UNK clone RP24-... 36 9.4 3
AQ988765|AQ988765.1 RPCI-23-327I18.TV RPCI-23 Mus musculus ... 42 12 1
AC094687|AC094687.5 Rattus norvegicus clone CH230-5E14, ***... 42 12 1
AZ280508|AZ280508.1 RPCI-23-151J21.TV RPCI-23 Mus musculus ... 42 12 1
AC106969|AC106969.5 Rattus norvegicus clone CH230-18J4, ***... 42 12 1
AR354014|AR354014.1 Sequence 132 from patent US 6593114. 42 12 1
AE005937|AE005937.1 Caulobacter crescentus CB15 section 263... 42 12 1
AC112789|AC112789.3 Mus musculus chromosome UNK clone RP23-... 42 12 1
AZ785319|AZ785319.1 2M0029F12F Mouse 10kb plasmid UUGC1M li... 42 12 1
AC113934|AC113934.2 Homo sapiens chromosome 1 clone RP11-52... 42 12 1
AZ524892|AZ524892.1 237PbF04 Pb MBN #21 Plasmodium berghei ... 42 12 1
AZ437716|AZ437716.1 1M0226O19F Mouse 10kb plasmid UUGC1M li... 42 12 1
AC073733|AC073733.2 Mus musculus clone RP23-251J11, WORKING... 42 12 1
AZ280484|AZ280484.1 RPCI-23-151J18.TV RPCI-23 Mus musculus ... 42 12 1
AX619518|AX619518.1 Sequence 2481 from Patent WO02094868. 42 12 1
AY181784|AY181784.1 Suaeda eltonica chloroplast atpB-rbcL i... 42 12 1
AC099787|AC099787.2 Homo sapiens chromosome 1 clone RP4-538... 42 119 2
AP004829|AP004829.1 Staphylococcus aureus subsp. aureus MW2... 42 184 2
AP003136|AP003136.2 Staphylococcus aureus subsp. aureus N31... 42 185 2
AP003364|AP003364.2 Staphylococcus aureus subsp. aureus Mu5... 42 1433 4
>AF095930|AF095930.1 Dictyostelium discoideum p41-Arc (arpD) mRNA,
complete cds.
Length = 1462
Score = 48.1 bits (24), Expect(3) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 cattgtattatattccacctcata 131
||||||||||||||||||||||||
Sbjct: 79 cattgtattatattccacctcata 102
Score = 38.2 bits (19), Expect(3) = 0.0
Identities = 27/31 (87%)
Strand = Plus / Plus
Query: 147 ttaaaatcaccttttttntntntaatntttt 177
||||||||||||||||| | | |||| ||||
Sbjct: 118 ttaaaatcaccttttttatatataatatttt 148
Score = 1310 bits (661), Expect(3) = 0.0
Identities = 661/661 (100%)
Strand = Plus / Plus
Query: 220 ggcatccaaacaatttattattggcaacctcatcctctgactacaaggttagagtattcg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggcatccaaacaatttattattggcaacctcatcctctgactacaaggttagagtattcg 687
Query: 280 acgcctacataaagaaagccgatggtcgtagtgtcactcgtccatacggtgaagtcgctt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acgcctacataaagaaagccgatggtcgtagtgtcactcgtccatacggtgaagtcgctt 747
Query: 340 ttggtgaaccagtctttgaatttgaccaatgcgcctcatgggtccatgccctcaaatggt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttggtgaaccagtctttgaatttgaccaatgcgcctcatgggtccatgccctcaaatggt 807
Query: 400 ccccatccggtagtaccttggcttactcctcacacgatggtgtctttgccgttgcaaact 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ccccatccggtagtaccttggcttactcctcacacgatggtgtctttgccgttgcaaact 867
Query: 460 tttcaaccaatccaccaaccatcgaaaaactcagagttcgtaatttaccattacgtgatc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tttcaaccaatccaccaaccatcgaaaaactcagagttcgtaatttaccattacgtgatc 927
Query: 520 tcctttacatcactgaaaactctatcgccggtgttggttacgattgtgctccacttttaa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tcctttacatcactgaaaactctatcgccggtgttggttacgattgtgctccacttttaa 987
Query: 580 tcactaatcaaaacggttggaaatattctggtgaaatggataaggcctctgaaggtggtg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 tcactaatcaaaacggttggaaatattctggtgaaatggataaggcctctgaaggtggtg 1047
Query: 640 ctgccgctggctctgaaacctctgctcgtaaactcttccaaaataaagtagaccttggtg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 ctgccgctggctctgaaacctctgctcgtaaactcttccaaaataaagtagaccttggtg 1107
Query: 700 aatcaaaatctgccgataaaaagttaacaaccgttcatcaaaattgtattacttcaatcg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 aatcaaaatctgccgataaaaagttaacaaccgttcatcaaaattgtattacttcaatcg 1167
Query: 760 ttccattcaagagtgtaggtggtgtcgtctctgatttcagtacctctggtttagatggta 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 ttccattcaagagtgtaggtggtgtcgtctctgatttcagtacctctggtttagatggta 1227
Query: 820 acattgtcgtatggcatgtaaaagctcttgaagctaaaaataaattcaaagtcatttaaa 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1228 acattgtcgtatggcatgtaaaagctcttgaagctaaaaataaattcaaagtcatttaaa 1287
Query: 880 t 880
|
Sbjct: 1288 t 1288
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 13187730
Number of Sequences: 25022185
Number of extensions: 13187730
Number of successful extensions: 895218
Number of sequences better than 10.0: 39
length of query: 907
length of database: P,692,356,608
effective HSP length: 23
effective length of query: 884
effective length of database: P,116,846,353
effective search space: 28391292176052
effective search space used: 28391292176052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 200 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home