Homology VFD459 vs Protein
Query= VFD459 (VFD459Q) /CSM/VF/VFD4-C/VFD459Q.Seq.d/
(674 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR853286_11(CR853286|pid:none) Zebrafish DNA sequence from clone... 236 1e-60
BC154154_1(BC154154|pid:none) Danio rerio Ras-related GTP bindin... 235 1e-60
GU588962_1(GU588962|pid:none) Ictalurus punctatus clone CBPN2611... 235 1e-60
AK166658_1(AK166658|pid:none) Mus musculus 5 days embryo whole b... 235 2e-60
(Q9HB90) RecName: Full=Ras-related GTP-binding protein C; ... 235 2e-60
AX405799_1(AX405799|pid:none) Sequence 214 from Patent WO0222660. 235 2e-60
AB017616_1(AB017616|pid:none) Mus musculus YGR163w mRNA homologu... 235 2e-60
AL606962_5(AL606962|pid:none) Mouse DNA sequence from clone RP23... 235 2e-60
BC119864_1(BC119864|pid:none) Bos taurus Ras-related GTP binding... 235 2e-60
AF323609_1(AF323609|pid:none) Homo sapiens GTPase-interacting pr... 234 4e-60
BC142594_1(BC142594|pid:none) Danio rerio zgc:162165, mRNA (cDNA... 233 6e-60
AJ719695_1(AJ719695|pid:none) Gallus gallus mRNA for hypothetica... 233 6e-60
BC095626_1(BC095626|pid:none) Danio rerio Ras-related GTP bindin... 233 8e-60
(Q7TT45) RecName: Full=Ras-related GTP-binding protein D; ... 232 1e-59
AL772288_4(AL772288|pid:none) Mouse DNA sequence from clone RP23... 232 1e-59
AL772288_2(AL772288|pid:none) Mouse DNA sequence from clone RP23... 232 1e-59
BC167014_1(BC167014|pid:none) Rattus norvegicus Ras-related GTP ... 232 1e-59
AK017818_1(AK017818|pid:none) Mus musculus 8 days embryo whole b... 230 5e-59
BC123045_1(BC123045|pid:none) Xenopus tropicalis Ras-related GTP... 229 9e-59
BC084295_1(BC084295|pid:none) Xenopus laevis hypothetical LOC495... 229 9e-59
BC118790_1(BC118790|pid:none) Xenopus tropicalis Ras-related GTP... 226 6e-58
BT080688_1(BT080688|pid:none) Caligus clemensi clone ccle-evs-50... 223 6e-57
AE013599_663(AE013599|pid:none) Drosophila melanogaster chromoso... 217 5e-55
AL606962_7(AL606962|pid:none) Mouse DNA sequence from clone RP23... 202 9e-51
CU928168_154(CU928168|pid:none) Kluyveromyces thermotolerans str... 151 2e-35
CR380951_134(CR380951|pid:none) Candida glabrata strain CBS138 c... 150 4e-35
CR382130_423(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 150 5e-35
CU928179_927(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 148 2e-34
AE016820_330(AE016820|pid:none) Ashbya gossypii ATCC 10895 chrom... 148 2e-34
HE605205_243(HE605205|pid:none) Candida parapsilosis strain CDC3... 144 4e-33
(P53290) RecName: Full=GTP-binding protein GTR2; &AB015239_1(AB... 143 8e-33
CR382133_508(CR382133|pid:none) Debaryomyces hansenii strain CBS... 141 3e-32
HE576754_556(HE576754|pid:none) Naumovozyma castellii CBS 4309 c... 140 4e-32
AM920436_2299(AM920436|pid:none) Penicillium chrysogenum Wiscons... 139 9e-32
HE612866_186(HE612866|pid:none) Tetrapisispora phaffii CBS 4417 ... 137 4e-31
AM269980_93(AM269980|pid:none) Aspergillus niger contig An01c033... 137 5e-31
FQ790350_67(FQ790350|pid:none) Botryotinia fuckeliana isolate T4... 135 2e-30
FM992695_281(FM992695|pid:none) Candida dubliniensis CD36 chromo... 135 2e-30
AY231687_1(AY231687|pid:none) Drosophila yakuba clone yak-em_CG8... 134 3e-30
CP003012_648(CP003012|pid:none) Thielavia terrestris NRRL 8126 c... 120 4e-26
CU633900_381(CU633900|pid:none) Podospora anserina S mat+ genomi... 118 2e-25
CP003004_562(CP003004|pid:none) Myceliophthora thermophila ATCC ... 118 3e-25
BC037732_1(BC037732|pid:none) Mus musculus Ras-related GTP bindi... 108 3e-22
HE573026_883(HE573026|pid:none) Trypanosoma vivax Y486 annotated... 90 8e-17
FN554973_1079(FN554973|pid:none) Trypanosoma brucei gambiense DA... 90 1e-16
AH015505_1(AH015505|pid:none) Sus scrofa ras-related GTP binding... 87 9e-16
FR799573_609(FR799573|pid:none) Leishmania mexicana MHOM/GT/2001... 79 1e-13
AM502254_640(AM502254|pid:none) Leishmania infantum chromosome 3... 77 7e-13
FR823386_61(FR823386|pid:none) Neospora caninum Liverpool comple... 49 2e-04
AY815462_1(AY815462|pid:none) Schistosoma japonicum SJCHGC03284 ... 44 0.007
(O74824) RecName: Full=GTP-binding protein gtr1; &AL031854_13(A... 43 0.012
FN314624_1(FN314624|pid:none) Schistosoma japonicum isolate Anhu... 39 0.22
AM270126_43(AM270126|pid:none) Aspergillus niger contig An07c008... 39 0.22
AY816075_1(AY816075|pid:none) Schistosoma japonicum SJCHGC00956 ... 39 0.22
AY813504_1(AY813504|pid:none) Schistosoma japonicum clone SJCHGC... 39 0.22
CP000286_705(CP000286|pid:none) Cryptococcus gattii WM276 chromo... 38 0.38
FP929138_171(FP929138|pid:none) Leptosphaeria maculans JN3 lm_Su... 37 0.65
CR382127_318(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 37 0.65
FN357446_18(FN357446|pid:none) Schistosoma mansoni genome sequen... 36 1.4
EZ422872_1(EZ422872|pid:none) TSA: Glossina morsitans morsitans ... 35 3.2
CP001197_1149(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 35 4.2
BT078369_1(BT078369|pid:none) Lepeophtheirus salmonis Pacific fo... 35 4.2
FM992689_773(FM992689|pid:none) Candida dubliniensis CD36 chromo... 34 5.5
CP003009_877(CP003009|pid:none) Thielavia terrestris NRRL 8126 c... 34 5.5
AK289407_1(AK289407|pid:none) Homo sapiens cDNA FLJ76642 complet... 34 5.5
(Q63487) RecName: Full=Ras-related GTP-binding protein B; ... 34 5.5
BC072080_1(BC072080|pid:none) Xenopus laevis MGC78980 protein, m... 34 7.2
BC124979_1(BC124979|pid:none) Xenopus laevis Ras-related GTP-bin... 34 7.2
>CR853286_11(CR853286|pid:none) Zebrafish DNA sequence from clone
DKEY-218F9 in linkage group 19 Contains the gene for a
novel protein (zgc:63514), the gene for a novel protein
(zgc:100869), the gene for a novel protein similar to
vertebrate Ras-related GTP binding C (RRAGC), five genes
for a novel protein similar to bloodthirsty (bty) and
two novel genes, complete sequence.
Length = 392
Score = 236 bits (601), Expect = 1e-60
Identities = 119/176 (67%), Positives = 140/176 (79%), Gaps = 1/176 (0%)
Frame = +2
Query: 11 QRDIQQKTTEELADANIN-VHPSFYVTSIYDHSIFEAFSKVIQKLIPQLPTLENLLXVFI 187
QRDI Q+ ++LADA++ +H SFY+TSIYDHSIFEAFSKV+QKLIPQLPTLENLL +FI
Sbjct: 175 QRDIHQRANDDLADASLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFI 234
Query: 188 SRSRIEKAFLVDVVSKIYVATDNSPVDMQTYELCXXXXXXXXXXXXXYGLKXEXEGLGYD 367
S S IEKAFL DVVSKIY+ATD+SPVDMQ+YELC YGLK E G YD
Sbjct: 235 SNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYGLKDEGNGNAYD 294
Query: 368 QESHSVIKLNNGMVLYLKEVNKYLALVCLLRESNFDKHGLIDYNFICFKKAIEEVF 535
+ES ++IKLNN VLYLKEV K+LALVC+LRE +F++ GLIDYNF CF+KAI EVF
Sbjct: 295 KESLAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFRKAIHEVF 350
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,019,217,860
Number of extensions: 14649777
Number of successful extensions: 26344
Number of sequences better than 10.0: 68
Number of HSP's gapped: 26279
Number of HSP's successfully gapped: 68
Length of query: 224
Length of database: 1,732,582,204
Length adjustment: 127
Effective length of query: 97
Effective length of database: 1,053,232,153
Effective search space: 102163518841
Effective search space used: 102163518841
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Dictyostelium discoideum cDNA Project Home