Homology VFD459 vs DNA
Query= VFD459 (VFD459Q) /CSM/VF/VFD4-C/VFD459Q.Seq.d/
(674 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
new_ddbjhum.seq; ddbjpri.seq; new_ddbjpri.seq; ddbjrod1.seq;
ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq;
new_ddbjrod.seq; ddbjmam.seq; new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; new_ddbjinv.seq;
ddbjpln1.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq;
new_ddbjvrl.seq; ddbjphg.seq; new_ddbjphg.seq; ddbjuna.seq;
new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq; ddbjgss11.seq;
ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq; ddbjgss15.seq;
ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq;
ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq;
ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq;
ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq;
ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq;
ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq;
ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq; ddbjgss40.seq;
ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq;
ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq;
ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss6.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; new_ddbjgss1.seq; new_ddbjgss2.seq;
new_ddbjgss3.seq; new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; new_ddbjhtg1.seq; new_ddbjhtg2.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; new_ddbjsts.seq; ddbjsyn.seq; new_ddbjsyn.seq;
est_atha1.seq; new_est_atha1.seq; est_cele1.seq; new_est_cele1.seq;
est_drer1.seq; new_est_drer1.seq; est_dmel1.seq; new_est_dmel1.seq;
est_gmax1.seq; new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; new_est_hum1.seq; est_lesc1.seq;
new_est_lesc1.seq; est_mous1.seq; est_mous2.seq; est_mous3.seq;
new_est_mous1.seq; est_osat1.seq; new_est_osat1.seq; est_rnor1.seq;
new_est_rnor1.seq; est_xlae1.seq; new_est_xlae1.seq; est_zmay1.seq;
new_est_zmay1.seq; est_rest1.seq; est_rest2.seq; new_est_rest1.seq
24,929,324 sequences; P,631,589,963 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
CF408603|CF408603.1 CH3#055_E12T7 Canine heart normalized c... 66 3e-21 3
CD268267|CD268267.1 tab82c11.x1 Hydra EST -III Hydra magnip... 52 8e-20 4
W35337|W35337.1 zc71e12.r1 Soares_fetal_heart_NbHH19W Homo ... 66 1e-19 3
AI028080|AI028080.1 ow51a03.x1 Soares_parathyroid_tumor_NbH... 66 2e-19 3
AA454046|AA454046.1 zx48c06.r1 Soares_testis_NHT Homo sapie... 66 2e-19 3
CF455510|CF455510.1 AGENCOURT_15364013 Human Anterior Horn ... 66 4e-19 3
AX427441|AX427441.1 Sequence 14 from Patent WO0123558. 66 7e-19 3
AX405774|AX405774.1 Sequence 189 from Patent WO0222660. 66 8e-19 3
BC003088|BC003088.1 Homo sapiens Ras-related GTP binding D,... 66 1e-18 3
AF272036|AF272036.1 Homo sapiens Rag D mRNA, complete cds. 66 1e-18 3
BG027411|BG027411.1 602296136F1 NIH_MGC_86 Homo sapiens cDN... 64 2e-18 3
AL137502|AL137502.1 Homo sapiens mRNA; cDNA DKFZp761H171 (f... 66 1e-17 3
AL523998|AL523998.2 human full-length cDNA 3-PRIME end of c... 66 1e-17 3
AL522445|AL522445.2 human full-length cDNA 3-PRIME end of c... 66 3e-17 3
BE045560|BE045560.1 hh23f05.x1 NCI_CGAP_Lu24 Homo sapiens c... 58 5e-17 3
BG476425|BG476425.1 602521941F1 NIH_MGC_20 Homo sapiens cDN... 58 1e-16 3
BI860023|BI860023.1 603385986F1 NIH_MGC_87 Homo sapiens cDN... 58 2e-16 3
AW827818|AW827818.1 ra59c02.y1 Bird-Rao Meloidogyne incogni... 64 2e-16 2
AA322761|AA322761.1 EST25439 Cerebellum II Homo sapiens cDN... 60 6e-16 2
BX330451|BX330451.1 human full-length cDNA 3-PRIME end of c... 66 2e-15 2
BX327179|BX327179.1 human full-length cDNA 5-PRIME end of c... 66 2e-15 2
BM807461|BM807461.1 AGENCOURT_6574956 NIH_MGC_124 Homo sapi... 58 4e-15 3
W35330|W35330.1 zc71c12.r1 Soares_fetal_heart_NbHH19W Homo ... 58 5e-15 3
AL132710|AL132710.16 Human DNA sequence *** SEQUENCING CANC... 66 2e-14 4
AL138717|AL138717.6 Human DNA sequence from clone RP11-11D8... 66 5e-13 4
BU686125|BU686125.1 UI-CF-DU1-adq-a-18-0-UI.s1 UI-CF-DU1 Ho... 66 3e-10 2
CB529917|CB529917.1 UI-H-FT2-bji-d-15-0-UI.s1 NCI_CGAP_FT2 ... 66 2e-08 2
AI096890|AI096890.1 qb58f10.x1 NCI_CGAP_Brn23 Homo sapiens ... 48 3e-07 2
AL572617|AL572617.1 human full-length cDNA 3-PRIME end of c... 48 3e-07 2
AI123834|AI123834.1 ow61d06.x1 Soares_NSF_F8_9W_OT_PA_P_S1 ... 66 6e-07 1
CB242685|CB242685.1 UI-CF-FN0-afs-o-20-0-UI.s1 UI-CF-FN0 Ho... 66 6e-07 1
BM975804|BM975804.1 UI-CF-EN1-acv-m-21-0-UI.s1 UI-CF-EN1 Ho... 66 6e-07 1
AI765701|AI765701.1 wi83e02.x1 NCI_CGAP_Kid12 Homo sapiens ... 66 6e-07 1
CD513903|CD513903.1 AGENCOURT_14365315 NIH_MGC_179 Homo sap... 66 6e-07 1
BZ773084|BZ773084.1 mcv61f09.b1 HFOSMID007 Homo sapiens gen... 66 6e-07 1
CB528334|CB528334.1 UI-H-FT2-bjg-h-13-0-UI.s1 NCI_CGAP_FT2 ... 66 6e-07 1
BM833837|BM833837.1 K-EST0108686 S11SNU1 Homo sapiens cDNA ... 66 6e-07 1
BE883089|BE883089.1 601508407F1 NIH_MGC_71 Homo sapiens cDN... 52 9e-06 3
CB528681|CB528681.1 UI-H-FT2-bjd-j-14-0-UI.s1 NCI_CGAP_FT2 ... 58 1e-05 2
AI739489|AI739489.1 wi14b09.x1 NCI_CGAP_Co16 Homo sapiens c... 58 1e-05 2
AJ301056|AJ301056.1 Sus scrofa EST, clone 04A08bT3. 48 2e-05 2
AW005873|AW005873.1 wz90b04.x1 NCI_CGAP_Brn25 Homo sapiens ... 60 4e-05 1
AL622614|AL622614.1 T7 end of clone 027DH05 of library SmBA... 60 4e-05 1
BH185665|BH185665.1 027_P_10-21 SmBAC1 Schistosoma mansoni ... 60 4e-05 1
CA431731|CA431731.1 UI-H-DF0-bet-l-18-0-UI.s1 NCI_CGAP_DF0 ... 60 4e-05 1
CA438243|CA438243.1 UI-H-DT1-avw-c-23-0-UI.s1 NCI_CGAP_DT1 ... 60 4e-05 1
BG717229|BG717229.1 602689538F1 NIH_MGC_97 Homo sapiens cDN... 52 2e-04 2
BI464006|BI464006.1 603202766F1 NIH_MGC_97 Homo sapiens cDN... 52 2e-04 2
AL522446|AL522446.2 human full-length cDNA 5-PRIME end of c... 52 3e-04 2
CB785468|CB785468.1 AMGNNUC:NRHW1-00005-E11-A W rat hypo+pi... 32 5e-04 4
BI747703|BI747703.1 rm45h03.y1 Meloidogyne arenaria egg pAM... 56 6e-04 1
BF565554|BF565554.1 UI-R-BT1-akl-g-02-0-UI.r1 UI-R-BT1 Ratt... 32 6e-04 4
AC116851|AC116851.3 Mus musculus clone RP24-396N7, WORKING ... 34 0.001 7
CB578272|CB578272.1 AMGNNUC:NRHY4-00152-E2-A W Rat hypothal... 32 0.001 4
CB577530|CB577530.1 AMGNNUC:NRDG1-00071-E12-A nrdg1 (10855)... 32 0.001 4
BF118944|BF118944.1 601755293F1 NCI_CGAP_Mam5 Mus musculus ... 42 0.001 3
CB929658|CB929658.1 rj02d01.y1 Meloidogyne chitwoodi egg pA... 54 0.002 1
CC861154|CC861154.1 NDL.2I17.T7 Notre Dame Liverpool Aedes ... 38 0.004 2
AI638060|AI638060.1 tt06g10.x1 NCI_CGAP_GC6 Homo sapiens cD... 52 0.009 1
CD373131|CD373131.1 UI-R-GO0-csi-e-06-0-UI.r1 UI-R-GO0 Ratt... 32 0.010 4
BX359192|BX359192.1 human full-length cDNA 5-PRIME end of c... 46 0.016 2
AI768749|AI768749.1 wi86d06.x1 NCI_CGAP_Kid12 Homo sapiens ... 50 0.036 1
AI761326|AI761326.1 wi60c01.x1 NCI_CGAP_Co16 Homo sapiens c... 50 0.036 1
BG187039|BG187039.1 RST6018 Athersys RAGE Library Homo sapi... 50 0.036 1
AQ899557|AQ899557.1 HS_3233_A2_B09_T7C CIT Approved Human G... 50 0.036 1
BI185083|BI185083.1 UNL-P-FN-cl-a-09-0-UNL.s1 UNL-P-FN Sus ... 44 0.044 2
W70912|W70912.1 me23g05.r1 Soares mouse embryo NbME13.5 14.... 34 0.059 3
AA250095|AA250095.1 mx23f08.r1 Soares mouse NML Mus musculu... 34 0.069 3
AA895842|AA895842.1 vy34h01.r1 Stratagene mouse lung 937302... 34 0.092 3
CA561176|CA561176.1 K0283D12-5N NIA Mouse Unfertilized Egg ... 34 0.097 3
CA874557|CA874557.1 K0933C06-5N NIA Mouse Neural Stem Cell ... 34 0.099 3
CF173903|CF173903.1 B0930G01-5 NIA Mouse Unfertilized Egg c... 34 0.11 3
CA560059|CA560059.1 K0267B10-5N NIA Mouse Unfertilized Egg ... 34 0.12 3
CF172873|CF172873.1 B0915A12-5 NIA Mouse Unfertilized Egg c... 34 0.12 3
CA573095|CA573095.1 K0545G09-5N NIA Mouse Hematopoietic Ste... 34 0.12 3
AI769580|AI769580.1 wj24g03.x1 NCI_CGAP_Kid12 Homo sapiens ... 48 0.14 1
BI296521|BI296521.1 UI-R-CV2-cgs-b-12-0-UI.s1 UI-R-CV2 Ratt... 42 0.15 2
BF658262|BF658262.1 maa87c11.y1 Soares_thymus_2NbMT Mus mus... 34 0.15 3
CF172556|CF172556.1 B0909D06-5 NIA Mouse Unfertilized Egg c... 34 0.15 3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 m... 36 0.15 8
AC090677|AC090677.13 Homo sapiens 12 BAC RP11-637N6 (Roswel... 40 0.16 2
BF133924|BF133924.1 601779162F1 NCI_CGAP_Lu30 Mus musculus ... 34 0.24 3
BG288587|BG288587.1 602383460F1 NIH_MGC_94 Mus musculus cDN... 34 0.25 3
AL356364|AL356364.18 Human DNA sequence from clone RP11-328... 42 0.26 2
AP004829|AP004829.1 Staphylococcus aureus subsp. aureus MW2... 36 0.32 7
AW636570|AW636570.1 bl48c08.w1 Blackshear/Soares normalized... 36 0.34 2
AC026558|AC026558.3 Homo sapiens clone RP11-637N6, WORKING ... 40 0.38 2
AL808140|AL808140.5 Mouse DNA sequence from clone RP23-147K... 36 0.38 4
CA339904|CA339904.1 NISC_ly08g11.y1 NCI_CGAP_Pr32 Rattus no... 32 0.39 3
AC074305|AC074305.1 Mus musculus chromosome 16 clone RP23-1... 34 0.54 7
AC026554|AC026554.3 Homo sapiens chromosome 3 clone RP11-63... 36 0.54 4
AF523571|AF523571.1 Gavia immer clone TUMWGi6.1.87 microsat... 46 0.56 1
AI521931|AI521931.1 ti85g01.x1 NCI_CGAP_Kid11 Homo sapiens ... 46 0.56 1
G32490|G32490.1 A009E43 Human Homo sapiens STS genomic, seq... 36 0.58 2
AX344560|AX344560.1 Sequence 11 from Patent WO0200932. 34 0.60 7
AC105905|AC105905.4 Mus musculus clone RP24-79I18, WORKING ... 34 0.65 8
AL357506|AL357506.10 Human DNA sequence from clone RP11-327... 36 0.81 5
BX465189|BX465189.5 Zebrafish DNA sequence *** SEQUENCING I... 44 0.87 3
AC010152|AC010152.4 Homo sapiens chromosome Y clone RP11-53... 40 0.89 5
AF191071|AF191071.3 Homo sapiens chromosome 8 clone GS1-388... 36 0.90 4
>CF408603|CF408603.1 CH3#055_E12T7 Canine heart normalized cDNA
Library in pBluescript Canis familiaris cDNA clone
CH3#055_E12 5', mRNA sequence.
Length = 938
Score = 28.2 bits (14), Expect(3) = 3e-21
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 caaagagatattca 24
||||||||||||||
Sbjct: 464 caaagagatattca 477
Score = 65.9 bits (33), Expect(3) = 3e-21
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 77 ttctatgtgacaagtatttatgatcattcaatctttgaagctttt 121
|||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct: 533 ttctatttgacaagtatatatgatcattcaatatttgaagctttt 577
Score = 65.9 bits (33), Expect(3) = 3e-21
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 198 gaattgaaaaagcatttttagttgatgttgttagtaaaatttatgttgctactgataatt 257
|||||||||| |||||| | ||||||| || |||||||||||| |||| ||||||| |
Sbjct: 654 gaattgaaaaggcatttctctttgatgtggtcagtaaaatttatattgcaactgatagta 713
Query: 258 caccagttgatatgcaaacttatga 282
| ||||| ||||||||||| |||||
Sbjct: 714 ccccagtggatatgcaaacctatga 738
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 18080910
Number of Sequences: 24929324
Number of extensions: 18080910
Number of successful extensions: 1593766
Number of sequences better than 10.0: 297
length of query: 674
length of database: P,631,589,963
effective HSP length: 23
effective length of query: 651
effective length of database: P,058,215,511
effective search space: 20869898297661
effective search space used: 20869898297661
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 200 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home