Homology VFD241 vs DNA
Query= VFD241 (VFD241Q) /CSM/VF/VFD2-B/VFD241Q.Seq.d/
(1373 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
new_ddbjhum.seq; ddbjpri.seq; new_ddbjpri.seq; ddbjrod1.seq;
ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq;
new_ddbjrod.seq; ddbjmam.seq; new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; new_ddbjinv.seq;
ddbjpln1.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq;
new_ddbjvrl.seq; ddbjphg.seq; new_ddbjphg.seq; ddbjuna.seq;
new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq; ddbjgss11.seq;
ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq; ddbjgss15.seq;
ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq;
ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq;
ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq;
ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq;
ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq;
ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq;
ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq; ddbjgss40.seq;
ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq;
ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq;
ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss6.seq; ddbjgss7.seq;
ddbjgss8.seq; ddbjgss9.seq; new_ddbjgss1.seq; new_ddbjgss2.seq;
new_ddbjgss3.seq; new_ddbjgss4.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; new_ddbjhtg1.seq; new_ddbjhtg2.seq;
ddbjpat1.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; new_ddbjsts.seq; ddbjsyn.seq; new_ddbjsyn.seq;
est_atha1.seq; new_est_atha1.seq; est_cele1.seq; new_est_cele1.seq;
est_drer1.seq; new_est_drer1.seq; est_dmel1.seq; new_est_dmel1.seq;
est_gmax1.seq; new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; new_est_hum1.seq; est_lesc1.seq;
new_est_lesc1.seq; est_mous1.seq; est_mous2.seq; est_mous3.seq;
new_est_mous1.seq; est_osat1.seq; new_est_osat1.seq; est_rnor1.seq;
new_est_rnor1.seq; est_xlae1.seq; new_est_xlae1.seq; est_zmay1.seq;
new_est_zmay1.seq; est_rest1.seq; est_rest2.seq; new_est_rest1.seq
24,929,324 sequences; P,631,589,963 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
U70317|U70317.1 Dictyostelium discoideum HydA (hydA) gene, ... 1215 0.0 3
AX619230|AX619230.1 Sequence 2193 from Patent WO02094868. 56 1e-09 3
AR354367|AR354367.1 Sequence 485 from patent US 6593114. 56 3e-09 3
BX559412|BX559412.1 Glossina morsitans morsitans (Tseatse f... 46 4e-08 3
AX619692|AX619692.1 Sequence 2655 from Patent WO02094868. 48 2e-07 4
BX554263|BX554263.1 Glossina morsitans morsitans (Tseatse f... 46 5e-07 3
Y17825|Y17825.1 Agaricus bisporus aldA and echA genes. 40 3e-06 4
AE017033|AE017033.1 Bacillus anthracis str. Ames section 10... 46 3e-06 12
AX536902|AX536902.1 Sequence 503 from Patent WO02064766. 40 9e-06 4
BX559491|BX559491.1 Glossina morsitans morsitans (Tseatse f... 46 1e-05 2
BI323317|BI323317.1 kt69f06.y1 Strongyloides ratti L2 pAMP1... 40 2e-05 3
AR353928|AR353928.1 Sequence 46 from patent US 6593114. 48 3e-05 5
BP189858|BP189858.1 Dugesia japonica cDNA, clone: 02753_HH,... 48 4e-05 2
AY227203|AY227203.1 Lotus corniculatus aldehyde dehydrogena... 38 5e-05 4
CA755511|CA755511.1 BR030022000_PLATE_F10_78_090.ab1 OA Ory... 40 1e-04 3
X58869|X58869.4 Gallus gallus mRNA for aldehyde dehydrogena... 54 2e-04 3
AE017007|AE017007.1 Bacillus cereus ATCC 14579 section 10 o... 50 2e-04 9
AC069081|AC069081.4 Staphylococcus aureus clone sabac-47, c... 48 8e-04 5
AF333962|AF333962.1 Staphylococcus aureus transcription ter... 56 0.001 1
AR320321|AR320321.1 Sequence 2871 from patent US 6562958. 36 0.001 4
BM393630|BM393630.1 50072-2-10-B09.f.1 Chilcoat/Turkewitz c... 42 0.002 3
BM392554|BM392554.1 50071-2-10-B09.f.1 Chilcoat/Turkewitz c... 42 0.002 3
BM393607|BM393607.1 50072-2-10-A08.f.1 Chilcoat/Turkewitz c... 42 0.002 3
BM392541|BM392541.1 50071-2-10-A08.f.1 Chilcoat/Turkewitz c... 42 0.002 3
CA900845|CA900845.1 PCSC15240 Scarlet Runner Bean Suspensor... 44 0.002 2
BM400596|BM400596.1 5009-0-76-C02.t.1 Chilcoat/Turkewitz cD... 42 0.003 3
BI517262|BI517262.1 BB160024B20G06.5 Bee Brain Normalized L... 36 0.004 4
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 m... 34 0.006 11
BI516310|BI516310.1 BB160022A10E07.5 Bee Brain Normalized L... 46 0.008 2
BM879557|BM879557.1 kt97a03.y1 Strongyloides ratti PA femal... 42 0.008 2
AX620858|AX620858.1 Sequence 3821 from Patent WO02094868. 42 0.015 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 m... 36 0.038 12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 m... 36 0.039 16
BP188452|BP188452.1 Dugesia japonica cDNA, clone: 02947_HH,... 40 0.048 3
BP185375|BP185375.1 Dugesia japonica cDNA, clone: 03749_HH,... 40 0.048 3
BQ479289|BQ479289.1 ku32a04.y1 Strongyloides ratti PA femal... 50 0.074 1
BQ479368|BQ479368.1 ku34c04.y1 Strongyloides ratti PA femal... 50 0.074 1
BX242056|BX242056.1 Danio rerio genomic clone DKEY-261B3, g... 50 0.074 1
AP003136|AP003136.2 Staphylococcus aureus subsp. aureus N31... 56 0.076 8
BI515246|BI515246.1 BB160017B20E12.5 Bee Brain Normalized L... 36 0.12 3
AP004822|AP004822.1 Staphylococcus aureus subsp. aureus MW2... 48 0.12 5
CF181864|CF181864.1 ISO1G1F Iso cDNA Isotricha sp. BBF-2003... 34 0.16 3
CF181855|CF181855.1 ISO1F1F Iso cDNA Isotricha sp. BBF-2003... 34 0.18 3
AE002106|AE002106.1 Ureaplasma urealyticum section 7 of 59 ... 46 0.27 3
CB572340|CB572340.1 AGENCOURT_13005436 NIH_MGC_165 Mus musc... 48 0.29 1
U96401|U96401.1 Mus musculus aldehyde dehydrogenase Ahd-2-l... 48 0.29 1
BC046315|BC046315.1 Mus musculus, similar to aldehyde dehyd... 48 0.29 1
D21196|D21196.1 Dictyostelium discoideum mitochondrial DNA. 48 0.29 1
BC032880|BC032880.1 Mus musculus, similar to aldehyde dehyd... 48 0.29 1
AB015227|AB015227.1 Homo sapiens mRNA for RALDH2-T, complet... 34 0.31 3
BX004784|BX004784.8 Zebrafish DNA sequence from clone DKEY-... 36 0.34 7
BX255895|BX255895.2 Zebrafish DNA sequence *** SEQUENCING I... 44 0.34 7
AB015226|AB015226.1 Homo sapiens mRNA for RALDH2, complete ... 34 0.41 3
BP187437|BP187437.1 Dugesia japonica cDNA, clone: 00420_HN,... 36 0.42 2
BI177720|BI177720.1 EST518665 cSTE Solanum tuberosum cDNA c... 36 0.45 2
AJ131754|AJ131754.1 Staphylococcus aureus ORF1 (partial), O... 42 0.46 4
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 m... 32 0.48 9
AB043540|AB043540.1 Avicennia marina mRNA for betaine aldeh... 36 0.51 3
BM538143|BM538143.1 ha90g05.g1 Canis cDNAs from testes cell... 36 0.53 2
BI178416|BI178416.1 EST519361 cSTE Solanum tuberosum cDNA c... 36 0.54 2
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, compl... 38 0.61 10
BD193744|BD193744.1 Enterococcus faecialis polynucleotides ... 48 0.61 2
BQ045860|BQ045860.1 EST594978 P. infestans-challenged potat... 36 0.62 2
AL139075|AL139075.2 Campylobacter jejuni subsp. jejuni NCTC... 36 0.63 8
AC087711|AC087711.5 Homo sapiens chromosome 8, clone RP11-1... 40 0.65 7
AP004829|AP004829.1 Staphylococcus aureus subsp. aureus MW2... 56 0.69 7
AF009415|AF009415.1 Staphylococcus xylosus choline transpor... 36 0.75 4
AC069334|AC069334.4 Homo sapiens chromosome 11 clone RP11-6... 40 0.76 7
BB160029|BB160029.1 Mus musculus 16 days neonate thymus cDN... 40 0.78 2
AC124989|AC124989.3 Mus musculus clone RP24-404O8, WORKING ... 42 0.78 3
AE015786|AE015786.1 Shewanella oneidensis MR-1 section 335 ... 42 0.85 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 m... 34 0.92 11
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) c... 36 0.93 10
BX470071|BX470071.2 Zebrafish DNA sequence *** SEQUENCING I... 36 0.99 7
BX004774|BX004774.4 Zebrafish DNA sequence from clone CH211... 34 1.1 8
AL428066|AL428066.1 clone BA0AB023E06 of library BA0AB from... 46 1.2 1
AL986068|AL986068.1 Danio rerio genomic clone DKEY-42J10, g... 46 1.2 1
BX561011|BX561011.1 Glossina morsitans morsitans (Tseatse f... 46 1.2 1
BX558306|BX558306.1 Glossina morsitans morsitans (Tseatse f... 46 1.2 1
AC115893|AC115893.4 Mus musculus clone RP24-442I13, WORKING... 42 1.2 4
AX142307|AX142307.1 Sequence 1029 from Patent WO0134809. 36 1.2 3
AB015228|AB015228.1 Homo sapiens mRNA for RALDH2-T, complet... 34 1.2 3
BU035401|BU035401.1 QHJ6O14.yg.ab1 QH_EFGHJ sunflower RHA28... 38 1.3 2
BU031291|BU031291.1 QHJ18A02.yg.ab1 QH_EFGHJ sunflower RHA2... 38 1.3 2
BC030589|BC030589.1 Homo sapiens, Similar to aldehyde dehyd... 34 1.4 3
BU030441|BU030441.1 QHJ15G18.yg.ab1 QH_EFGHJ sunflower RHA2... 38 1.4 2
AX392733|AX392733.1 Sequence 23 from Patent WO0212526. 32 1.5 6
BX554262|BX554262.1 Glossina morsitans morsitans (Tseatse f... 42 1.5 2
AE016751|AE016751.1 Staphylococcus epidermidis ATCC 12228, ... 36 1.6 8
BX558792|BX558792.1 Glossina morsitans morsitans (Tseatse f... 42 1.6 2
AP003137|AP003137.2 Staphylococcus aureus subsp. aureus N31... 42 1.6 10
Z75550|Z75550.1 Caenorhabditis elegans cosmid T22C1. 46 1.6 2
BX562579|BX562579.1 Glossina morsitans morsitans (Tseatse f... 42 1.6 2
BX560996|BX560996.1 Glossina morsitans morsitans (Tseatse f... 42 1.7 2
AP004830|AP004830.1 Staphylococcus aureus subsp. aureus MW2... 42 1.7 10
BU033739|BU033739.1 QHJ2B10.yg.ab1 QH_EFGHJ sunflower RHA28... 38 1.7 2
BX559411|BX559411.1 Glossina morsitans morsitans (Tseatse f... 42 1.7 2
BX566288|BX566288.1 Glossina morsitans morsitans (Tseatse f... 42 1.7 2
BX640495|BX640495.5 Zebrafish DNA sequence *** SEQUENCING I... 38 1.7 6
BI510686|BI510686.1 BB160003A20B02.5 Bee Brain Normalized L... 32 1.7 3
>U70317|U70317.1 Dictyostelium discoideum HydA (hydA) gene, partial
cds.
Length = 1309
Score = 111 bits (56), Expect(3) = 0.0
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 654 taacgactgtgacgttaaccatattgcacaatgtgctaaggattacgttttcgccaatag 713
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 133 taacggctgtgacgttaaccatattgcacaatgttctaaggattacgttttcgccaatag 192
Query: 714 catg 717
||||
Sbjct: 193 catg 196
Score = 1215 bits (613), Expect(3) = 0.0
Identities = 613/613 (100%)
Strand = Plus / Plus
Query: 717 gcagtcatgttgtgctccatcaagattctttgttcaagagaatatctatgaagcattttt 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcagtcatgttgtgctccatcaagattctttgttcaagagaatatctatgaagcattttt 385
Query: 777 acaaattttcacagagaatattaaattattaaaagttggtgatccaaatgtaaatggtac 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acaaattttcacagagaatattaaattattaaaagttggtgatccaaatgtaaatggtac 445
Query: 837 aaatttaggcccattagttagtaaacaacaacatgatcgtgtattaggttacatccaaaa 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaatttaggcccattagttagtaaacaacaacatgatcgtgtattaggttacatccaaaa 505
Query: 897 aggtaaagaagaaggtgcaacttgtcatttaggtggtggtaattatcatcatgccgatgg 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aggtaaagaagaaggtgcaacttgtcatttaggtggtggtaattatcatcatgccgatgg 565
Query: 957 taaaggttatttcgttcaaccaactattttcaccaatgtcactgatgatatgacaatttg 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taaaggttatttcgttcaaccaactattttcaccaatgtcactgatgatatgacaatttg 625
Query: 1017 taaagaagaaatctttggtcctgttgttgtaattttaccattcaaaactgttgatgaagt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taaagaagaaatctttggtcctgttgttgtaattttaccattcaaaactgttgatgaagt 685
Query: 1077 aattaaaagagcaaataacacaacctatggtttagcagctggtgtttggactaaagatat 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aattaaaagagcaaataacacaacctatggtttagcagctggtgtttggactaaagatat 745
Query: 1137 cagtttagcattaaatgtttcaaataaattaaaaagtggttcagtttggattaatgaata 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagtttagcattaaatgtttcaaataaattaaaaagtggttcagtttggattaatgaata 805
Query: 1197 ttattcaatcatgccatcaataccatttggtggttataaacaatctggtattggtcgtga 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttattcaatcatgccatcaataccatttggtggttataaacaatctggtattggtcgtga 865
Query: 1257 cctatctgaatatgcaattcaaagttatttatctgttaaagctgttacaattgctcataa 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cctatctgaatatgcaattcaaagttatttatctgttaaagctgttacaattgctcataa 925
Query: 1317 aactttacatgct 1329
|||||||||||||
Sbjct: 926 aactttacatgct 938
Score = 34.2 bits (17), Expect(3) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1355 taaaataaaatactttt 1371
|||||||||||||||||
Sbjct: 964 taaaataaaatactttt 980
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 35892963
Number of Sequences: 24929324
Number of extensions: 35892963
Number of successful extensions: 3029446
Number of sequences better than 10.0: 405
length of query: 1373
length of database: P,631,589,963
effective HSP length: 23
effective length of query: 1350
effective length of database: P,058,215,511
effective search space: 43278590939850
effective search space used: 43278590939850
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 200 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home