Homology VFB482 vs Protein
Query= VFB482 (VFB482Q) /CSM/VF/VFB4-D/VFB482Q.Seq.d/
(1216 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subu... 422 0.0
BT097141_1(BT097141|pid:none) Soybean clone JCVI-FLGm-26E5 unkno... 206 3e-72
AK117761_1(AK117761|pid:none) Arabidopsis thaliana At4g19006 mRN... 201 7e-70
BT039217_1(BT039217|pid:none) Zea mays full-length cDNA clone ZM... 195 9e-67
EU964603_1(EU964603|pid:none) Zea mays clone 280258 26S proteaso... 195 2e-66
EU961903_1(EU961903|pid:none) Zea mays clone 238965 26S proteaso... 194 3e-66
BT040556_1(BT040556|pid:none) Zea mays full-length cDNA clone ZM... 194 4e-66
EU974195_1(EU974195|pid:none) Zea mays clone 442631 26S proteaso... 192 4e-65
DQ226994_1(DQ226994|pid:none) Nicotiana benthamiana RPN9 mRNA, p... 196 2e-61
AY223111_1(AY223111|pid:none) Schistosoma japonicum clone ZZD137... 181 8e-59
AY811806_1(AY811806|pid:none) Schistosoma japonicum SJCHGC06237 ... 181 8e-59
FR824064_42(FR824064|pid:none) Albugo laibachii Nc14, genomic co... 188 2e-58
CP002688_4996(CP002688|pid:none) Arabidopsis thaliana chromosome... 159 2e-58
BC049415_1(BC049415|pid:none) Danio rerio proteasome (prosome, m... 162 3e-57
JO843446_1(JO843446|pid:none) TSA: Amblyomma maculatum Am-34079 ... 162 6e-56
AJ575131_1(AJ575131|pid:none) Aspergillus niger rpnI gene for pu... 183 1e-55
(P84169) RecName: Full=26S proteasome non-ATPase regulatory subu... 160 1e-55
BC081154_1(BC081154|pid:none) Xenopus laevis MGC84231 protein, m... 157 3e-55
AY891992_1(AY891992|pid:none) Synthetic construct Homo sapiens c... 159 5e-55
(Q9UNM6) RecName: Full=26S proteasome non-ATPase regulatory subu... 159 5e-55
(B0BN93) RecName: Full=26S proteasome non-ATPase regulatory subu... 159 5e-55
BT043856_1(BT043856|pid:none) Salmo salar clone HM4_2965 proteas... 161 7e-55
FQ311442_394(FQ311442|pid:none) Sporisorium reilianum SRZ2 chrom... 178 9e-55
BT074801_1(BT074801|pid:none) Osmerus mordax clone omor-eva-508-... 160 9e-55
(Q5E964) RecName: Full=26S proteasome non-ATPase regulatory subu... 158 9e-55
AK314733_1(AK314733|pid:none) Homo sapiens cDNA, FLJ95595, highl... 159 1e-54
AB170074_1(AB170074|pid:none) Macaca fascicularis brain cDNA clo... 157 2e-54
CR382131_302(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 179 2e-54
BT082719_1(BT082719|pid:none) Anoplopoma fimbria clone afim-evh-... 159 4e-54
BX088700_67(BX088700|pid:none) DNA centromeric region sequence f... 173 2e-53
FP929133_234(FP929133|pid:none) Leptosphaeria maculans JN3 lm_Su... 172 2e-53
AM920437_149(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 186 4e-53
AK163017_1(AK163017|pid:none) Mus musculus 0 day neonate thymus ... 154 4e-53
AP007155_340(AP007155|pid:none) Aspergillus oryzae RIB40 DNA, SC... 181 5e-53
BT076810_1(BT076810|pid:none) Caligus rogercresseyi clone crog-e... 170 1e-51
JI173595_1(JI173595|pid:none) TSA: Ascaris suum ASCF_6444_1338 m... 154 2e-51
CP003011_308(CP003011|pid:none) Thielavia terrestris NRRL 8126 c... 171 2e-49
CP000286_79(CP000286|pid:none) Cryptococcus gattii WM276 chromos... 165 6e-49
AE017342_502(AE017342|pid:none) Cryptococcus neoformans var. neo... 165 1e-48
(Q9US13) RecName: Full=Probable 26S proteasome regulatory subuni... 164 1e-48
AE014297_3726(AE014297|pid:none) Drosophila melanogaster chromos... 159 3e-48
AB070262_1(AB070262|pid:none) Oryza sativa Japonica Group OsRPN9... 194 7e-48
AK094775_1(AK094775|pid:none) Homo sapiens cDNA FLJ37456 fis, cl... 159 2e-44
AK295944_1(AK295944|pid:none) Homo sapiens cDNA FLJ53046 complet... 159 2e-44
CU928171_152(CU928171|pid:none) Kluyveromyces thermotolerans str... 159 4e-44
CP001331_348(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 182 4e-44
FJ915071_1(FJ915071|pid:none) Danio rerio proteasome 26S non-ATP... 161 2e-39
JO840866_1(JO840866|pid:none) TSA: Amblyomma maculatum Am-34080 ... 105 7e-39
HE612866_42(HE612866|pid:none) Tetrapisispora phaffii CBS 4417 c... 161 8e-38
CP002500_65(CP002500|pid:none) Eremothecium cymbalariae DBVPG#72... 160 2e-37
FN392319_377(FN392319|pid:none) Pichia pastoris GS115 chromosome... 132 3e-36
T24581(T24581) hypothetical protein T06D8.8 - Caenorhabditis ele... 148 5e-34
HE605206_1398(HE605206|pid:none) Candida parapsilosis strain CDC... 141 7e-32
CR940353_261(CR940353|pid:none) Theileria annulata strain Ankara... 138 6e-31
CP000496_120(CP000496|pid:none) Scheffersomyces stipitis CBS 605... 135 5e-30
AF107836_1(AF107836|pid:none) Homo sapiens clone PFTGT1-2 26S pr... 132 3e-29
AM055943_39(AM055943|pid:none) Toxoplasma gondii RH, genomic DNA... 127 1e-27
FN554973_1898(FN554973|pid:none) Trypanosoma brucei gambiense DA... 122 5e-26
FM992689_119(FM992689|pid:none) Candida dubliniensis CD36 chromo... 119 3e-25
EF576115_1(EF576115|pid:none) Oryza sativa (indica cultivar-grou... 119 5e-25
HE573026_1523(HE573026|pid:none) Trypanosoma vivax Y486 annotate... 118 8e-25
HE575323_1326(HE575323|pid:none) Trypanosoma congolense IL3000 a... 115 7e-24
AM494956_144(AM494956|pid:none) Leishmania braziliensis chromoso... 109 3e-22
CT005258_118(CT005258|pid:none) Leishmania major strain Friedlin... 107 2e-21
EF215207_1(EF215207|pid:none) Callithrix jacchus clone K13-52.1_... 96 4e-18
BT124516_1(BT124516|pid:none) Picea sitchensis clone WS0474_L13 ... 85 7e-15
BT024259_1(BT024259|pid:none) Drosophila melanogaster IP15827 fu... 60 2e-07
(Q54KZ8) RecName: Full=Eukaryotic translation initiation factor ... 56 4e-06
(Q5B5C1) RecName: Full=Eukaryotic translation initiation factor ... 54 2e-05
CR940353_360(CR940353|pid:none) Theileria annulata strain Ankara... 54 2e-05
(A7SPX9) RecName: Full=Eukaryotic translation initiation factor ... 52 5e-05
AE017349_315(AE017349|pid:none) Cryptococcus neoformans var. neo... 50 3e-04
FR824057_59(FR824057|pid:none) Albugo laibachii Nc14, genomic co... 49 6e-04
CP001327_160(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 48 0.001
EU969436_1(EU969436|pid:none) Zea mays clone 330210 COP9 signalo... 48 0.001
(Q94899) RecName: Full=COP9 signalosome complex subunit 2; ... 48 0.001
BT120891_1(BT120891|pid:none) Lepeophtheirus salmonis clone lsal... 47 0.002
BT047127_1(BT047127|pid:none) Salmo salar clone ssal-rgb2-504-16... 47 0.003
DQ440395_1(DQ440395|pid:none) Aedes aegypti clone AET-529 COP9 s... 46 0.004
(Q0UXJ7) RecName: Full=Eukaryotic translation initiation factor ... 46 0.004
AP004051_2(AP004051|pid:none) Oryza sativa Japonica Group genomi... 46 0.004
(B3NRC6) RecName: Full=Eukaryotic translation initiation factor ... 46 0.004
(B4P6M6) RecName: Full=Eukaryotic translation initiation factor ... 46 0.004
FQ857233_22(FQ857233|pid:none) Piriformospora indica PIRI_contig... 46 0.005
BC059697_1(BC059697|pid:none) Danio rerio COP9 constitutive phot... 45 0.006
(B4HR14) RecName: Full=Eukaryotic translation initiation factor ... 44 0.014
AY398350_1(AY398350|pid:none) Danio rerio clone RK111A2F06 dendr... 44 0.019
CR854996_7(CR854996|pid:none) Oryza sativa genomic DNA, chromoso... 44 0.019
FJ502068_1(FJ502068|pid:none) Aristichthys nobilis clone A146 Co... 44 0.019
FR823393_228(FR823393|pid:none) Neospora caninum Liverpool compl... 44 0.024
FN357353_17(FN357353|pid:none) Schistosoma mansoni genome sequen... 44 0.024
(Q292F0) RecName: Full=Eukaryotic translation initiation factor ... 44 0.024
(B4GDM5) RecName: Full=Eukaryotic translation initiation factor ... 44 0.024
DQ235192_1(DQ235192|pid:none) Solanum tuberosum clone 167F07 unk... 43 0.032
BT076863_1(BT076863|pid:none) Caligus rogercresseyi clone crog-e... 43 0.041
(Q7ZYU8) RecName: Full=Eukaryotic translation initiation factor ... 43 0.041
AK355121_1(AK355121|pid:none) Hordeum vulgare subsp. vulgare mRN... 43 0.041
(B3MCZ5) RecName: Full=Eukaryotic translation initiation factor ... 43 0.041
FB863367_1(FB863367|pid:none) Sequence 82640 from Patent WO20080... 43 0.041
HB840911_1(HB840911|pid:none) Sequence 190125 from Patent EP2090... 43 0.041
EZ424129_1(EZ424129|pid:none) TSA: Glossina morsitans morsitans ... 42 0.054
FN327102_1(FN327102|pid:none) Schistosoma japonicum isolate Anhu... 42 0.054
CP000592_168(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.054
(Q5DHT6) RecName: Full=Eukaryotic translation initiation factor ... 42 0.054
(B0WTN3) RecName: Full=Eukaryotic translation initiation factor ... 42 0.054
HE573027_28(HE573027|pid:none) Trypanosoma vivax Y486 annotated ... 42 0.071
(Q7Q068) RecName: Full=Eukaryotic translation initiation factor ... 42 0.071
GU587829_1(GU587829|pid:none) Ictalurus furcatus clone CBFH27160... 42 0.092
FB863381_1(FB863381|pid:none) Sequence 82654 from Patent WO20080... 42 0.092
(Q9UUJ7) RecName: Full=COP9 signalosome complex subunit 7; &AL1... 41 0.12
(Q5ZJ64) RecName: Full=Eukaryotic translation initiation factor ... 41 0.12
CR954201_330(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 41 0.12
(B4KT65) RecName: Full=Eukaryotic translation initiation factor ... 41 0.12
HM854817_13(HM854817|pid:none) Cucumis melo subsp. melo clone Cm... 41 0.12
FN357341_58(FN357341|pid:none) Schistosoma mansoni genome sequen... 41 0.12
AF071317_1(AF071317|pid:none) Mus musculus COP9 complex subunit ... 40 0.21
AK342420_1(AK342420|pid:none) Acyrthosiphon pisum ACYPI001319 mR... 40 0.21
JF439372_1(JF439372|pid:none) Solanum chacoense COP9 complex sub... 40 0.21
AJ720533_1(AJ720533|pid:none) Gallus gallus mRNA for hypothetica... 40 0.21
(Q55BD5) RecName: Full=COP9 signalosome complex subunit 7; ... 40 0.21
CP001582_17(CP001582|pid:none) Helicobacter pylori v225d, comple... 40 0.21
BT033449_1(BT033449|pid:none) Zea mays full-length cDNA clone ZM... 40 0.27
AK222564_1(AK222564|pid:none) Homo sapiens mRNA for dendritic ce... 40 0.35
BC012659_1(BC012659|pid:none) Mus musculus COP9 (constitutive ph... 39 0.46
CP002983_15(CP002983|pid:none) Helicobacter pylori SNT49, comple... 39 0.46
AM260522_1524(AM260522|pid:none) Helicobacter acinonychis str. S... 39 0.46
CP002074_15(CP002074|pid:none) Helicobacter pylori PeCan4, compl... 39 0.46
FN598874_1608(FN598874|pid:none) Helicobacter pylori B8 complete... 39 0.46
(Q7L2H7) RecName: Full=Eukaryotic translation initiation factor ... 39 0.60
(Q99JX4) RecName: Full=Eukaryotic translation initiation factor ... 39 0.60
AL606494_8(AL606494|pid:none) Mouse DNA sequence from clone RP23... 39 0.60
(Q9H9Q2) RecName: Full=COP9 signalosome complex subunit 7b; ... 39 0.60
BC091493_1(BC091493|pid:none) Homo sapiens COP9 constitutive pho... 39 0.60
AF277183_1(AF277183|pid:none) Homo sapiens PNAS-125 mRNA, comple... 39 0.60
JO843379_1(JO843379|pid:none) TSA: Amblyomma maculatum Am-2619 m... 39 0.60
AK304378_1(AK304378|pid:none) Homo sapiens cDNA FLJ54904 complet... 39 0.60
(Q8BV13) RecName: Full=COP9 signalosome complex subunit 7b; ... 39 0.60
(Q5R8C4) RecName: Full=Eukaryotic translation initiation factor ... 39 0.60
(Q2KI56) RecName: Full=COP9 signalosome complex subunit 7b; ... 39 0.60
CP002982_17(CP002982|pid:none) Helicobacter pylori Puno135, comp... 39 0.60
AE001439_15(AE001439|pid:none) Helicobacter pylori J99, complete... 39 0.60
FM991728_15(FM991728|pid:none) Helicobacter pylori B38 complete ... 39 0.60
AK227983_1(AK227983|pid:none) Arabidopsis thaliana mRNA for hypo... 39 0.78
BT126677_1(BT126677|pid:none) Dendroctonus ponderosae clone DPO1... 39 0.78
CP001574_241(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 39 0.78
AK170140_1(AK170140|pid:none) Mus musculus NOD-derived CD11c +ve... 39 0.78
AP011941_15(AP011941|pid:none) Helicobacter pylori F30 DNA, comp... 39 0.78
CP002334_16(CP002334|pid:none) Helicobacter pylori Lithuania75, ... 39 0.78
CP001173_16(CP001173|pid:none) Helicobacter pylori G27, complete... 39 0.78
CP002076_15(CP002076|pid:none) Helicobacter pylori Cuz20, comple... 39 0.78
AP011943_15(AP011943|pid:none) Helicobacter pylori F32 DNA, comp... 39 0.78
CP002071_17(CP002071|pid:none) Helicobacter pylori Sat464, compl... 39 0.78
CP000241_18(CP000241|pid:none) Helicobacter pylori HPAG1, comple... 39 0.78
CP002605_18(CP002605|pid:none) Helicobacter pylori 83, complete ... 39 0.78
CP001072_16(CP001072|pid:none) Helicobacter pylori Shi470, compl... 39 0.78
CP002980_17(CP002980|pid:none) Helicobacter pylori Puno120, comp... 39 0.78
CP002073_19(CP002073|pid:none) Helicobacter pylori SJM180, compl... 38 1.0
CP001217_15(CP001217|pid:none) Helicobacter pylori P12, complete... 38 1.3
(Q5IR70) RecName: Full=Cancer-associated gene 1 protein homolog;... 38 1.3
CP002336_16(CP002336|pid:none) Helicobacter pylori SouthAfrica7,... 38 1.3
AY695827_1(AY695827|pid:none) Mus musculus cancer/testis antigen... 38 1.3
(O01422) RecName: Full=COP9 signalosome complex subunit 2; ... 37 1.7
BT073009_1(BT073009|pid:none) Oncorhynchus mykiss clone omyk-evn... 37 1.7
BT048555_1(BT048555|pid:none) Salmo salar clone ssal-rgb2-643-26... 37 1.7
FN318118_1(FN318118|pid:none) Schistosoma japonicum isolate Anhu... 37 1.7
BT012433_1(BT012433|pid:none) Drosophila melanogaster RH63621 fu... 37 2.3
CU633865_198(CU633865|pid:none) Podospora anserina S mat+ genomi... 37 2.3
(P40961) RecName: Full=Prohibitin-1; &AY558096_1(AY558096|pid:n... 37 2.3
U16737_1(U16737|pid:none) Saccharomyces cerevisiae prohibitin (P... 37 2.3
CP002096_212(CP002096|pid:none) Helicobacter pylori 35A, complet... 37 2.3
BC093015_1(BC093015|pid:none) Homo sapiens COP9 constitutive pho... 37 3.0
AF193844_1(AF193844|pid:none) Homo sapiens COP9 complex subunit ... 37 3.0
FN357329_20(FN357329|pid:none) Schistosoma mansoni genome sequen... 37 3.0
(Q9CZ04) RecName: Full=COP9 signalosome complex subunit 7a; ... 37 3.0
BC153238_1(BC153238|pid:none) Bos taurus COP9 constitutive photo... 37 3.0
AK001318_1(AK001318|pid:none) Homo sapiens cDNA FLJ10456 fis, cl... 37 3.0
(Q5R762) RecName: Full=COP9 signalosome complex subunit 7a; ... 37 3.0
BT043761_1(BT043761|pid:none) Salmo salar clone HM6_1089 eukaryo... 36 3.9
AK013155_1(AK013155|pid:none) Mus musculus 10, 11 days embryo wh... 36 3.9
FN314222_1(FN314222|pid:none) Schistosoma japonicum isolate Anhu... 36 3.9
AY814199_1(AY814199|pid:none) Schistosoma japonicum SJCHGC06488 ... 36 3.9
AF064603_1(AF064603|pid:none) Homo sapiens GA17 protein mRNA, co... 36 5.1
FN554974_32(FN554974|pid:none) Trypanosoma brucei gambiense DAL9... 36 5.1
AK019122_1(AK019122|pid:none) Mus musculus ES cells cDNA, RIKEN ... 36 5.1
HB840905_1(HB840905|pid:none) Sequence 190119 from Patent EP2090... 36 5.1
CP002631_445(CP002631|pid:none) Treponema succinifaciens DSM 248... 36 5.1
HE580278_83(HE580278|pid:none) Naumovozyma dairenensis CBS 421 c... 36 5.1
FB863365_1(FB863365|pid:none) Sequence 82638 from Patent WO20080... 35 6.6
EF678031_1(EF678031|pid:none) Picea sitchensis clone WS0281_M23 ... 35 6.6
CP001322_502(CP001322|pid:none) Desulfatibacillum alkenivorans A... 35 6.6
BT077002_1(BT077002|pid:none) Caligus rogercresseyi clone crog-e... 35 8.6
>(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subunit
13; AltName: Full=26S proteasome regulatory subunit RPN9;
AltName: Full=26S proteasome regulatory subunit S11;
Length = 385
Score = 422 bits (1085), Expect(2) = 0.0
Identities = 217/220 (98%), Positives = 218/220 (99%)
Frame = +3
Query: 528 SSFXRVSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYG 707
SSF RVSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYG
Sbjct: 158 SSFYRVSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYG 217
Query: 708 FGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKL 887
FGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKL
Sbjct: 218 FGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKL 277
Query: 888 RQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTV 1067
RQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTV
Sbjct: 278 RQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTV 337
Query: 1068 EIIHITWVTPRILDLNQINSMNNRIAEWTXKAKTSLRLVK 1187
EIIHITWVTPRILDLNQINSMNNRIAEWT KAKTSLRLV+
Sbjct: 338 EIIHITWVTPRILDLNQINSMNNRIAEWTEKAKTSLRLVE 377
Score = 301 bits (771), Expect(2) = 0.0
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +2
Query: 56 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFI 235
LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFI
Sbjct: 7 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFI 66
Query: 236 RDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIANMNLRS 415
RDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIANMNLRS
Sbjct: 67 RDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYILTLSYIANMNLRS 126
Query: 416 GVAEQLQDCKKTLELAKEELQGVTGLDTIVYSS 514
GVAEQLQDCKKTLELAKEELQGVTGLDTIVYSS
Sbjct: 127 GVAEQLQDCKKTLELAKEELQGVTGLDTIVYSS 159
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 2,696,910,706
Number of extensions: 46929674
Number of successful extensions: 122200
Number of sequences better than 10.0: 191
Number of HSP's gapped: 122041
Number of HSP's successfully gapped: 245
Length of query: 405
Length of database: 1,732,582,204
Length adjustment: 134
Effective length of query: 271
Effective length of database: 1,015,787,662
Effective search space: 275278456402
Effective search space used: 275278456402
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home