Homology SSM637 vs Protein
Query= SSM637 (SSM637Q) /CSM/SS/SSM6-B/SSM637Q.Seq.d/
(973 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ213126_1(DQ213126|pid:none) Taeniopygia guttata clone 0058P002... 86 4e-15
AJ721104_1(AJ721104|pid:none) Gallus gallus mRNA for hypothetica... 82 3e-14
(Q9BT23) RecName: Full=LIM domain-containing protein 2; &AK0923... 81 8e-14
(Q4KM31) RecName: Full=LIM domain-containing protein 2; &BC0988... 81 8e-14
(Q8BGB5) RecName: Full=LIM domain-containing protein 2; &AK0125... 80 2e-13
BC088558_1(BC088558|pid:none) Xenopus tropicalis hypothetical LO... 77 1e-12
EF119718_1(EF119718|pid:none) Homo sapiens xeplin variant 2 (CMY... 77 1e-12
AK122889_1(AK122889|pid:none) Homo sapiens cDNA FLJ16539 fis, cl... 77 1e-12
AB097518_1(AB097518|pid:none) Macaca fascicularis brain cDNA clo... 77 1e-12
BC172832_1(BC172832|pid:none) Synthetic construct Mus musculus c... 77 2e-12
BT021808_1(BT021808|pid:none) Bos taurus hypothetical protein MG... 76 2e-12
AM469183_1(AM469183|pid:none) Vitis vinifera contig VV78X221882.... 75 4e-12
GQ901953_1(GQ901953|pid:none) Hevea brasiliensis LIM1 mRNA, comp... 75 7e-12
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr... 75 7e-12
EF146377_1(EF146377|pid:none) Populus trichocarpa clone WS0117_L... 74 9e-12
AF443117_1(AF443117|pid:none) Gossypium hirsutum LIM domain prot... 74 9e-12
EF035040_1(EF035040|pid:none) Populus tremula x Populus alba LIM... 74 1e-11
AF184886_1(AF184886|pid:none) Nicotiana tabacum LIM domain prote... 74 1e-11
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M... 73 2e-11
AK031698_1(AK031698|pid:none) Mus musculus 13 days embryo male t... 73 3e-11
AK049350_1(AK049350|pid:none) Mus musculus ES cells cDNA, RIKEN ... 73 3e-11
AF307845_1(AF307845|pid:none) Mus musculus epithelial protein lo... 73 3e-11
(Q9ERG0) RecName: Full=LIM domain and actin-binding protein 1; A... 73 3e-11
CP002686_5841(CP002686|pid:none) Arabidopsis thaliana chromosome... 72 3e-11
T50694(T50694) transcription factor L2 [imported] - Arabidopsis ... 72 3e-11
AK317129_1(AK317129|pid:none) Arabidopsis thaliana AT3G55770 mRN... 72 3e-11
GQ166106_1(GQ166106|pid:none) TSA: Lycoris longituba LlTF-LIM-8 ... 72 6e-11
AC004665_22(AC004665|pid:none) Arabidopsis thaliana chromosome 2... 71 8e-11
BC001247_1(BC001247|pid:none) Homo sapiens LIM domain and actin ... 71 1e-10
AK000372_1(AK000372|pid:none) Homo sapiens cDNA FLJ20365 fis, cl... 71 1e-10
AF198455_1(AF198455|pid:none) Homo sapiens epithelial protein lo... 71 1e-10
AK096172_1(AK096172|pid:none) Homo sapiens cDNA FLJ38853 fis, cl... 71 1e-10
AB489164_1(AB489164|pid:none) Synthetic construct DNA, clone: pF... 71 1e-10
DQ364062_1(DQ364062|pid:none) Sus scrofa EPLIN-b mRNA, complete ... 71 1e-10
BC096905_1(BC096905|pid:none) Danio rerio similar to Epithelial ... 71 1e-10
DQ364063_1(DQ364063|pid:none) Sus scrofa EPLIN-a mRNA, complete ... 71 1e-10
BC121434_1(BC121434|pid:none) Xenopus tropicalis epithelial prot... 70 1e-10
AK085065_1(AK085065|pid:none) Mus musculus 13 days embryo lung c... 70 1e-10
BC084208_1(BC084208|pid:none) Xenopus laevis hypothetical LOC495... 70 2e-10
AF047353_1(AF047353|pid:none) Helianthus annuus LIM domain prote... 69 3e-10
EU496813_1(EU496813|pid:none) Nicotiana tabacum LIM domain prote... 69 4e-10
BT093203_1(BT093203|pid:none) Soybean clone JCVI-FLGm-17A9 unkno... 69 5e-10
AC123899_21(AC123899|pid:none) Medicago truncatula clone mth2-33... 68 7e-10
AL137898_13(AL137898|pid:none) Arabidopsis thaliana DNA chromoso... 67 1e-09
AF116851_1(AF116851|pid:none) Nicotiana tabacum LIM domain prote... 67 1e-09
BT091434_1(BT091434|pid:none) Soybean clone JCVI-FLGm-7P22 unkno... 67 1e-09
GQ165987_1(GQ165987|pid:none) TSA: Lycoris longituba LlTF-LIM-6 ... 67 2e-09
BT091376_1(BT091376|pid:none) Soybean clone JCVI-FLGm-7H10 unkno... 66 2e-09
BT053270_1(BT053270|pid:none) Medicago truncatula clone MTYFP_FQ... 66 3e-09
EF082885_1(EF082885|pid:none) Picea sitchensis clone WS02728_E15... 66 3e-09
EU482903_1(EU482903|pid:none) Pinus taeda LIM2 transcription fac... 65 4e-09
GQ165934_1(GQ165934|pid:none) TSA: Lycoris longituba LlTF-LIM-4 ... 65 4e-09
AC009273_19(AC009273|pid:none) Sequence of BAC T1N6 from Arabido... 65 6e-09
AC160095_6(AC160095|pid:none) Solanum lycopersicum clone BB, com... 65 6e-09
AF002109_4(AF002109|pid:none) Arabidopsis thaliana chromosome 2 ... 65 6e-09
EF035036_1(EF035036|pid:none) Populus tremula x Populus alba str... 65 7e-09
AB493659_1(AB493659|pid:none) Arabidopsis thaliana At3g61230 mRN... 64 9e-09
BT061506_1(BT061506|pid:none) Zea mays full-length cDNA clone ZM... 64 9e-09
BC047797_1(BC047797|pid:none) Danio rerio LIM domain and actin b... 64 9e-09
BT068434_1(BT068434|pid:none) Zea mays full-length cDNA clone ZM... 64 9e-09
BT036854_1(BT036854|pid:none) Zea mays full-length cDNA clone ZM... 64 1e-08
EF035035_1(EF035035|pid:none) Populus tremula x Populus alba str... 64 1e-08
EF147317_1(EF147317|pid:none) Populus trichocarpa clone WS0122_J... 64 1e-08
AK317367_1(AK317367|pid:none) Arabidopsis thaliana AT1G01780 mRN... 64 2e-08
GQ165916_1(GQ165916|pid:none) TSA: Lycoris longituba LlTF-LIM-3 ... 63 2e-08
GQ165886_1(GQ165886|pid:none) TSA: Lycoris longituba LlTF-LIM-2 ... 63 3e-08
EU186001_1(EU186001|pid:none) Lilium longiflorum LIM1 mRNA, comp... 62 4e-08
EU966603_1(EU966603|pid:none) Zea mays clone 295565 unknown mRNA. 62 4e-08
BT039056_1(BT039056|pid:none) Zea mays full-length cDNA clone ZM... 62 4e-08
BT092394_1(BT092394|pid:none) Soybean clone JCVI-FLGm-10H10 unkn... 62 6e-08
AK375771_1(AK375771|pid:none) Hordeum vulgare subsp. vulgare mRN... 62 6e-08
EF035037_1(EF035037|pid:none) Populus tremula x Populus alba LIM... 62 6e-08
EF035038_1(EF035038|pid:none) Populus tremula x Populus alba LIM... 61 8e-08
EU962065_1(EU962065|pid:none) Zea mays clone 239982 pollen-speci... 61 8e-08
BT055434_1(BT055434|pid:none) Zea mays full-length cDNA clone ZM... 61 8e-08
EU957376_1(EU957376|pid:none) Zea mays clone 1590177 pollen-spec... 61 8e-08
AB079511_1(AB079511|pid:none) Populus kitakamiensis Pklim1 gene ... 61 8e-08
AB023479_1(AB023479|pid:none) Nicotiana tabacum mRNA for transcr... 61 8e-08
AB079513_1(AB079513|pid:none) Nicotiana tabacum Ntlim1 mRNA for ... 61 8e-08
AF197568_1(AF197568|pid:none) Nicotiana tabacum pollen specific ... 60 1e-07
BT089473_1(BT089473|pid:none) Soybean clone JCVI-FLGm-2E17 unkno... 60 1e-07
BC135680_1(BC135680|pid:none) Xenopus tropicalis epithelial prot... 60 2e-07
BT090223_1(BT090223|pid:none) Soybean clone JCVI-FLGm-3P4 unknow... 60 2e-07
EF145390_1(EF145390|pid:none) Populus trichocarpa clone WS01124_... 60 2e-07
AF184109_1(AF184109|pid:none) Nicotiana tabacum LIM domain prote... 60 2e-07
EF035039_1(EF035039|pid:none) Populus tremula x Populus alba LIM... 60 2e-07
AK373010_1(AK373010|pid:none) Hordeum vulgare subsp. vulgare mRN... 59 3e-07
AM475696_4(AM475696|pid:none) Vitis vinifera contig VV78X042996.... 59 4e-07
AF049917_1(AF049917|pid:none) Petunia x hybrida PGPS/D1 (PGPS/D1... 58 7e-07
AC125482_26(AC125482|pid:none) Medicago truncatula clone mth2-15... 58 7e-07
AF187103_1(AF187103|pid:none) Helianthus annuus LIM domain prote... 57 2e-06
(P29675) RecName: Full=Pollen-specific protein SF3; &AF187104_1... 57 2e-06
AF187105_1(AF187105|pid:none) Helianthus annuus LIM domain prote... 55 4e-06
AF370574_1(AF370574|pid:none) Arabidopsis thaliana transcription... 55 4e-06
AF116849_1(AF116849|pid:none) Helianthus annuus. 55 6e-06
AK319026_1(AK319026|pid:none) Arabidopsis thaliana AT3G55770 mRN... 55 6e-06
BT089890_1(BT089890|pid:none) Soybean clone JCVI-FLGm-3G17 unkno... 54 2e-05
GU575308_1(GU575308|pid:none) Solanum nigrum transcription facto... 53 2e-05
BT062488_1(BT062488|pid:none) Zea mays full-length cDNA clone ZM... 52 5e-05
AB079512_1(AB079512|pid:none) Nicotiana tabacum Ntlim1 gene for ... 52 6e-05
EU976500_1(EU976500|pid:none) Zea mays clone 896310 unknown mRNA. 50 2e-04
AM462939_1(AM462939|pid:none) Vitis vinifera contig VV78X214253.... 50 2e-04
BT094606_1(BT094606|pid:none) Soybean clone JCVI-FLGm-14D2 unkno... 49 3e-04
CP001328_545(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 48 7e-04
DQ167188_1(DQ167188|pid:none) Brassica rapa putative transcripti... 45 0.006
GQ165832_1(GQ165832|pid:none) TSA: Lycoris longituba LlTF-LIM-1 ... 40 0.25
FN357691_3(FN357691|pid:none) Schistosoma mansoni genome sequenc... 39 0.43
FN357691_4(FN357691|pid:none) Schistosoma mansoni genome sequenc... 36 3.6
HE601627_468(HE601627|pid:none) Schistosoma mansoni strain Puert... 35 8.1
FN357451_41(FN357451|pid:none) Schistosoma mansoni genome sequen... 35 8.1
>DQ213126_1(DQ213126|pid:none) Taeniopygia guttata clone
0058P0027C04 putative RIKEN cDNA 0610025L06 mRNA,
complete cds.
Length = 128
Score = 85.5 bits (210), Expect = 4e-15
Identities = 42/94 (44%), Positives = 52/94 (55%)
Frame = +3
Query: 123 QEKCTACAKTVYLTXXXXXXXXXXXXTFXXXXXXXXXXXXXXSLGNYASLNGVFYCKPHF 302
+E CTAC KTVY F SLG+YA+L+G FYCKPHF
Sbjct: 38 KEMCTACQKTVY----PMERLVADKFVFHNFCFCCKHCHTKLSLGSYAALHGEFYCKPHF 93
Query: 303 KQLFATKGNYDEGFGKSKHSEKWTPQATPTGTSS 404
+QLF +KGNYDEGFG+ +H E W + +GT S
Sbjct: 94 QQLFKSKGNYDEGFGRKQHKELWVHKEVESGTKS 127
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,150,832,964
Number of extensions: 15765622
Number of successful extensions: 35015
Number of sequences better than 10.0: 110
Number of HSP's gapped: 34776
Number of HSP's successfully gapped: 172
Length of query: 324
Length of database: 1,732,582,204
Length adjustment: 132
Effective length of query: 192
Effective length of database: 1,026,486,088
Effective search space: 197085328896
Effective search space used: 197085328896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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