Dictyostelium discoideum cDNA Clone SSM637

Size:		1.7k
3' sequence:	TMS980312
5' sequence:	TM981120
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSM637

CTTTTTATTT TTGTATTATA TTCTCTCTTT ATTTCTTTTC TATATATAGA
TAANTTTTTT TTAGAAAAAC TAAAAAAAAA ACCTCAAACA ATTAATACAA
AATGGTAAAC ATTGGTGGAA CTCAAGAAAA ATGTACTGCA TGTGCTAAAA
CTGTATACTT AACAGAAAAG ATTGTAGTTG AAGATAAAGA AGATAAGAAA
ACTTTCCACA AATTATGTTT AAAATGTACT CACTGTAAGC TTACATTAAG
TCTTGGTAAC TATGCATCAT TAAATGGTGT ATTCTATTGT AAACCACATT
TCAAACAATT ATTCGCCACC AAAGGTAACT ACGATGAAGG TTTCGGTAAA
TCAAAACATT CTGAAAAATG GACACCACAA GCCACCCCAA CTGGTACTTC
TTCATTCATT CCAGTTGAAG AATCAAAATC ATCAGAAAAG AAAGAAACAC
CAACAACAAT TTCATCAAAA TTCTCAGGAT CAACTGAAAA ATGTAATCTC
TGTAATAAGA CAGTATATTT AACAGAAAAG ATTGTTGTTG AAGATAAAGA
AGATAAGAAA GTATTACATA AACAATGTTT GA-------- --TACAACAA
CCAGTTTCTC AACCAGAAGA AGAACAACAA CAACAAGACG AAGTTAAAGT
TGAAGAACCA ATCTCTGAAG AAGAAGAAAA AGTTGAAGAA AAAGTTGAAG
AACCAGTCGC TGAACAAGAA GAAGAAAAGG TTGAGGAACC AGTTGTTGCT
GAAGAAGAAA AAGTTGAAGA ACCAGTTACT GAAGAAGAAA AAGTTGAAGA
ACCAGTCGTT GCCTCTGAAG AACCAGTTGA AGAAGAAACA AAAGCTGAAG
AAGAAAACTA AACTTAAATT TCTCAACGCA AATAATTTTC AACATAAAAA
AAAAAAACAA AGAAATATAT AAAAAAAAAA AAAAAAAATA AAAAAATTGT
ATAAATTATC ACAATACCAA AAA

Translated Amino Acid Sequence SSM637

fyfciifslyffsiyr*xffrktkkktsnn*YKMVNIGGTQEKCTACAKTVYLTEKIVVE
DKEDKKTFHKLCLKCTHCKLTLSLGNYASLNGVFYCKPHFKQLFATKGNYDEGFGKSKHS
EKWTPQATPTGTSSFIPVEESKSSEKKETPTTISSKFSGSTEKCNLCNKTVYLTEKIVVE
DKEDKKVLHKQCL---

---YNNQFLNQKKNNNNKTKLKLKNQSLKKKKKLKKKLKNQSLNKKKKRLRNQLLLKKKK
LKNQLLKKKKLKNQSLPLKNQLKKKQKLKKKTKLKFLNANNFQHKKKKQRNI*kkkkkik
klyklsqyqk

Homology SSM637 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSM637 (SSM637Q) /CSM/SS/SSM6-B/SSM637Q.Seq.d/                       1098   0.0
AFL333 (AFL333Q) /CSM/AF/AFL3-B/AFL333Q.Seq.d/                        993   0.0
AFG415 (AFG415Q) /CSM/AF/AFG4-A/AFG415Q.Seq.d/                        993   0.0
SFI831 (SFI831Q) /CSM/SF/SFI8-B/SFI831Q.Seq.d/                        987   0.0
CHA595 (CHA595Q) /CSM/CH/CHA5-D/CHA595Q.Seq.d/                        987   0.0
AFN501 (AFN501Q) /CSM/AF/AFN5-A/AFN501Q.Seq.d/                        987   0.0
AFN158 (AFN158Q) /CSM/AF/AFN1-C/AFN158Q.Seq.d/                        985   0.0
AFL234 (AFL234Q) /CSM/AF/AFL2-B/AFL234Q.Seq.d/                        985   0.0
AFI579 (AFI579Q) /CSM/AF/AFI5-D/AFI579Q.Seq.d/                        985   0.0
SFK508 (SFK508Q) /CSM/SF/SFK5-A/SFK508Q.Seq.d/                        981   0.0

Homology SSM637 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ328184) Dictyostelium discoideum cDNA clone:dda23b09, 5' ...   993   0.0    1
(BJ325188) Dictyostelium discoideum cDNA clone:dda13n04, 5' ...   993   0.0    1
(BJ389351) Dictyostelium discoideum cDNA clone:dds18n08, 5' ...   987   0.0    1
(BJ362887) Dictyostelium discoideum cDNA clone:ddc23m23, 5' ...   987   0.0    1
(BJ328380) Dictyostelium discoideum cDNA clone:dda28a01, 5' ...   987   0.0    1
(BJ325457) Dictyostelium discoideum cDNA clone:dda14i16, 5' ...   987   0.0    1
(BJ325375) Dictyostelium discoideum cDNA clone:dda14j04, 5' ...   987   0.0    1
(BJ330143) Dictyostelium discoideum cDNA clone:dda27c15, 5' ...   985   0.0    1
(BJ328189) Dictyostelium discoideum cDNA clone:dda23c10, 5' ...   985   0.0    1
(BJ327036) Dictyostelium discoideum cDNA clone:dda18m19, 5' ...   985   0.0    1

Homology SSM637 vs Protein

Sequences producing significant alignments:                      (bits) Value


DQ213126_1(DQ213126|pid:none) Taeniopygia guttata clone 0058P002...    86   4e-15
AJ721104_1(AJ721104|pid:none) Gallus gallus mRNA for hypothetica...    82   3e-14
(Q9BT23) RecName: Full=LIM domain-containing protein 2;  &AK0923...    81   7e-14
(Q4KM31) RecName: Full=LIM domain-containing protein 2;  &BC0988...    81   7e-14
(Q8BGB5) RecName: Full=LIM domain-containing protein 2;  &AK0125...    80   2e-13
BC088558_1(BC088558|pid:none) Xenopus tropicalis hypothetical LO...    77   1e-12
EF119718_1(EF119718|pid:none) Homo sapiens xeplin variant 2 (CMY...    77   1e-12
AK122889_1(AK122889|pid:none) Homo sapiens cDNA FLJ16539 fis, cl...    77   1e-12
AB097518_1(AB097518|pid:none) Macaca fascicularis brain cDNA clo...    77   1e-12
BC172832_1(BC172832|pid:none) Synthetic construct Mus musculus c...    77   2e-12

Homology SSM637 vs Genome