Dictyostelium discoideum cDNA Clone SSM617

Size:		1.4k
3' sequence:	TMS980312
5' sequence:	TM981120
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSM617

CAATTTCTAA AAAATCTGGT CTAAATAATT CTGGTGGATC TTTAAATAAC
AGTGGTGGTG GTGGTGGTGG TGGTAGTAGT GGTAGTAGTG GTGGTGGTAG
TAGTGGTGGT GTTAATACAA ACAATAATAT TGGTTTTAAT AATTGTGGTA
AAGTTTTAAT GCCACCACCA GATTCACCAA ATCCAGTTTT GAGTTTAAAG
CTTTCTCATA GAGGACACCA AAGATCATAT TCAACAGTTA ATCCAGTGGT
TAGAACTCCA TCTCTATTGG GTTCATCATT CGATCCAAAT CAAAATAGTA
ATGATACAAC TAATCATTGT GAATTCCCGC AAGTAACTTC TTCAAAAGTT
ATGGAGGTAT TGGGTACAAG CTTAAAACAT TCCTCATCTT TACCAAAACC
ATTAATTGTT AAATCAATTC AAGAGGAACA GATTTCAACA CCAATAAATA
CAAGTAATGG TGCTGATGAT TTTAATCCAT TACCACCACT TTCTTCAACT
ATTGGTAGTG TTTCTTCTGC AATTAATGTT AGTGGTTCAT CACCTGCTCC
TC-------- --ACTCATAT TACAACATCA CCATTACCAA TAGGTGGAGG
TGGTAGTCAA GTTGATAATG GAAATAAATT TTTTACAGAT GGATGGCCAC
TTGGTGAACC AACTTCAACA CCTCAAATTA GTAACAATAA CAATGGCATA
GCTCAATCTG GTGAGGTTTT CTTTTCACAA TTTGTTTCAG CTCAACAACC
TTCATCAATT TCTGGTTCAA ATAAAATACC GTCAGTTTCA AGTACAAGTA
ATAATTTAAA TAATAATAAT AACAACAATA TTAATAATAG TAATTGTAGT
AGTTTTTCAT CAACATCATC AATATTACCA CCATTAATAA ATAGCTCTGG
TATGATTCCA CAAGCATCTT ATCACTCTTC AAACTTTTTC GATCAATCAC
CATTATCACA ATCATCGGCA TTCAATGATT TTGGTCCACC AACCCCTTCA
ATGTATCATA TGTCTTCAAG TAACCCTGGA ACATTTTTAA ATAATAATAA
TAATAATNNN NNNAATAATA ATAATAATAA TAATAATAAT AATAATAATC
CATTACCTCC CTTAAATAAT TCTGGTAATA TTATAAATAA TAACAATAAC
AACAAAGCAG TTATTGATGA AACCTCTATC GATGAGTTTG ATATGTTTCT
TGCTTTAAGA AATAAAAATA AAAATTAAAT AAAGTTTATA TTTTTAAATA
ATTAACAATA AAAAAAAAAA

Translated Amino Acid Sequence SSM617

ISKKSGLNNSGGSLNNSGGGGGGGSSGSSGGGSSGGVNTNNNIGFNNCGKVLMPPPDSPN
PVLSLKLSHRGHQRSYSTVNPVVRTPSLLGSSFDPNQNSNDTTNHCEFPQVTSSKVMEVL
GTSLKHSSSLPKPLIVKSIQEEQISTPINTSNGADDFNPLPPLSSTIGSVSSAINVSGSS
PAP---

---THITTSPLPIGGGGSQVDNGNKFFTDGWPLGEPTSTPQISNNNNGIAQSGEVFFSQF
VSAQQPSSISGSNKIPSVSSTSNNLNNNNNNNINNSNCSSFSSTSSILPPLINSSGMIPQ
ASYHSSNFFDQSPLSQSSAFNDFGPPTPSMYHMSSSNPGTFLNNNNNNXXNNNNNNNNNN
NNPLPPLNNSGNIINNNNNNKAVIDETSIDEFDMFLALRNKNKN*ikfiflnn*q*kkk

Homology SSM617 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSM617 (SSM617Q) /CSM/SS/SSM6-A/SSM617Q.Seq.d/                       1302   0.0
AFK335 (AFK335Q) /CSM/AF/AFK3-B/AFK335Q.Seq.d/                         44   0.005
CHN124 (CHN124Q) /CSM/CH/CHN1-A/CHN124Q.Seq.d/                         42   0.021
VFI507 (VFI507Q) /CSM/VF/VFI5-A/VFI507Q.Seq.d/                         40   0.081
SFL309 (SFL309Q) /CSM/SF/SFL3-A/SFL309Q.Seq.d/                         40   0.081
SFK274 (SFK274Q) /CSM/SF/SFK2-D/SFK274Q.Seq.d/                         40   0.081
VSJ447 (VSJ447Q) /CSM/VS/VSJ4-B/VSJ447Q.Seq.d/                         38   0.32
VSF383 (VSF383Q) /CSM/VS/VSF3-D/VSF383Q.Seq.d/                         38   0.32
AFL661 (AFL661Q) /CSM/AF/AFL6-C/AFL661Q.Seq.d/                         38   0.32
AFB148 (AFB148Q) /CSM/AF/AFB1-B/AFB148Q.Seq.d/                         38   0.32

Homology SSM617 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C93316) Dictyostelium discoideum slug cDNA, clone SSM617.        468   0.0    3
(AU074972) Dictyostelium discoideum slug cDNA, clone SSM617.      256   1e-85  2
(AY160100) Dictyostelium discoideum nucleotide exchange fact...    34   0.020  5
(AC184409) Strongylocentrotus purpuratus clone R3-3097C9, WO...    38   0.071  8
(AF474377) Dictyostelium discoideum Ras GTP exchange factor ...    34   0.35   4
(FV536043) Modified Microbial Nucleic Acid.                        34   0.75   19
(FV536042) Modified Microbial Nucleic Acid.                        34   0.75   19
(AC184404) Strongylocentrotus purpuratus clone R3-3110O2, WO...    40   0.87   6
(FV536181) Modified Microbial Nucleic Acid.                        36   0.90   13
(FV536180) Modified Microbial Nucleic Acid.                        36   0.90   13

Homology SSM617 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP001700_3895(CP001700|pid:none) Catenulispora acidiphila DSM 44...    36   5.4
CP002117_2188(CP002117|pid:none) Methanoplanus petrolearius DSM ...    35   7.0
(Q54B46) RecName: Full=Putative mediator of RNA polymerase II tr...    35   9.1

Homology SSM617 vs Genome