Homology SSM454 vs Protein
Query= SSM454 (SSM454Q) /CSM/SS/SSM4-C/SSM454Q.Seq.d/
(604 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso... 232 8e-60
CP001389_2024(CP001389|pid:none) Sinorhizobium fredii NGR234, co... 49 1e-04
CP000738_2005(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 47 5e-04
AL591688_2147(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 43 0.009
CP001349_1382(CP001349|pid:none) Methylobacterium nodulans ORS 2... 39 0.23
CP002083_3353(CP002083|pid:none) Hyphomicrobium denitrificans AT... 38 0.30
CP002157_1684(CP002157|pid:none) Maribacter sp. HTCC2170, comple... 37 0.67
CP001349_3517(CP001349|pid:none) Methylobacterium nodulans ORS 2... 33 7.4
AF143679_1(AF143679|pid:none) Homo sapiens lost in inflammatory ... 33 9.7
>AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromosome
2 map 1685067-2090751 strain AX4, complete sequence.
Length = 1265
Score = 232 bits (592), Expect = 8e-60
Identities = 120/146 (82%), Positives = 120/146 (82%)
Frame = +2
Query: 14 RSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVIVKATED 193
RSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVIVKATED
Sbjct: 43 RSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVIVKATED 102
Query: 194 SVRHCCQCNXXXXXXXXXXXXXIIPFTLLAIMPVNKKLQSKELDTFADDTRQLLAQWGEL 373
SVRHCCQCN IIPFTLLAIMPVNKKLQSKELDTFADDTRQLLAQWGEL
Sbjct: 103 SVRHCCQCNGLGWLLSGGLMLSIIPFTLLAIMPVNKKLQSKELDTFADDTRQLLAQWGEL 162
Query: 374 HXXXXXXXXXXXXIMGYKIFRHSHLL 451
H IMGYKIFRHSH L
Sbjct: 163 HSVRSVLSLSAVAIMGYKIFRHSHFL 188
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,337,188,066
Number of extensions: 22469774
Number of successful extensions: 54388
Number of sequences better than 10.0: 9
Number of HSP's gapped: 54385
Number of HSP's successfully gapped: 10
Length of query: 201
Length of database: 1,732,582,204
Length adjustment: 125
Effective length of query: 76
Effective length of database: 1,063,930,579
Effective search space: 80858724004
Effective search space used: 80858724004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Dictyostelium discoideum cDNA Project Home