Homology SSM454 vs Protein

Query= SSM454 (SSM454Q) /CSM/SS/SSM4-C/SSM454Q.Seq.d/
         (604 letters)

Database: nrp_B
           5,349,213 sequences; 1,732,582,204 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso...   232   8e-60
CP001389_2024(CP001389|pid:none) Sinorhizobium fredii NGR234, co...    49   1e-04
CP000738_2005(CP000738|pid:none) Sinorhizobium medicae WSM419, c...    47   5e-04
AL591688_2147(AL591688|pid:none) Sinorhizobium meliloti 1021 com...    43   0.009
CP001349_1382(CP001349|pid:none) Methylobacterium nodulans ORS 2...    39   0.23
CP002083_3353(CP002083|pid:none) Hyphomicrobium denitrificans AT...    38   0.30
CP002157_1684(CP002157|pid:none) Maribacter sp. HTCC2170, comple...    37   0.67
CP001349_3517(CP001349|pid:none) Methylobacterium nodulans ORS 2...    33   7.4
AF143679_1(AF143679|pid:none) Homo sapiens lost in inflammatory ...    33   9.7

>AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromosome
           2 map 1685067-2090751 strain AX4, complete sequence.
          Length = 1265

 Score =  232 bits (592), Expect = 8e-60
 Identities = 120/146 (82%), Positives = 120/146 (82%)
 Frame = +2

Query: 14  RSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVIVKATED 193
           RSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVIVKATED
Sbjct: 43  RSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVIVKATED 102

Query: 194 SVRHCCQCNXXXXXXXXXXXXXIIPFTLLAIMPVNKKLQSKELDTFADDTRQLLAQWGEL 373
           SVRHCCQCN             IIPFTLLAIMPVNKKLQSKELDTFADDTRQLLAQWGEL
Sbjct: 103 SVRHCCQCNGLGWLLSGGLMLSIIPFTLLAIMPVNKKLQSKELDTFADDTRQLLAQWGEL 162

Query: 374 HXXXXXXXXXXXXIMGYKIFRHSHLL 451
           H            IMGYKIFRHSH L
Sbjct: 163 HSVRSVLSLSAVAIMGYKIFRHSHFL 188

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 1,337,188,066
Number of extensions: 22469774
Number of successful extensions: 54388
Number of sequences better than 10.0: 9
Number of HSP's gapped: 54385
Number of HSP's successfully gapped: 10
Length of query: 201
Length of database: 1,732,582,204
Length adjustment: 125
Effective length of query: 76
Effective length of database: 1,063,930,579
Effective search space: 80858724004
Effective search space used: 80858724004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)




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