Dictyostelium discoideum cDNA Clone SSM454

Size:		0.9k
3' sequence:	TS980311
5' sequence:	*
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSM454

---------- GTTCGTTCAA CATTACCAAC TGAATTTGCA GTTAATGAAT
GGCGTGAAAG TTTTAAAAAG GCCGCTCCAT TACAATCTTC TCTTGCTGCA
GTTTCTGGTA TCGCTTCGTT GCTTACTTTT GGCTCCATTG CAAAGGCATC
CTGCAAGACA ATCAACAAAG TAATCGTCAA AGCCACAGAA GATTCAGTTC
GTCATTGTTG CCAATGTAAT GGTTTAGGTT GGTTGCTAAG TGGTGGTTTA
ATGCTTTCCA TTATTCCATT CACTTTATTA GCCATTATGC CAGTTAATAA
GAAATTACAA TCCAAAGAAC TTGATACCTT TGCTGATGAT ACTCGTCAAT
TATTAGCTCA ATGGGGTGAA TTACATTCAG TTCGTTCAGT TCTTTCACTC
TCTGCGGTTG CAATTATGGG TTACAAAATC TTTAGACACT CCCATTTGTT
AATTAAATCT TAAAAACATG TTATCATTAA GATGAAATTA CTTTCATAAT
CATTACCAAT TTAAATTTTA AAATGATATT TTATAAAATA AAAAATAAAA
TAAAATAATA TATATAATTA CAAAAATTAC AAATAGAAAA AAAAAAAAAA
AAAA

Translated Amino Acid Sequence SSM454

---RSTLPTEFAVNEWRESFKKAAPLQSSLAAVSGIASLLTFGSIAKASCKTINKVIVKA
TEDSVRHCCQCNGLGWLLSGGLMLSIIPFTLLAIMPVNKKLQSKELDTFADDTRQLLAQW
GELHSVRSVLSLSAVAIMGYKIFRHSHLLIKS*khviikmklls*slpi*ilk*yfik*k
ik*nniynyknyk*kkkkkk

Homology SSM454 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSM454 (SSM454Q) /CSM/SS/SSM4-C/SSM454Q.Seq.d/                        995   0.0
VSC823 (VSC823Q) /CSM/VS/VSC8-A/VSC823Q.Seq.d/                        991   0.0
SSI513 (SSI513Q) /CSM/SS/SSI5-A/SSI513Q.Seq.d/                        991   0.0
SSH454 (SSH454Q) /CSM/SS/SSH4-C/SSH454Q.Seq.d/                        991   0.0
SSF379 (SSF379Q) /CSM/SS/SSF3-D/SSF379Q.Seq.d/                        991   0.0
SSE766 (SSE766Q) /CSM/SS/SSE7-C/SSE766Q.Seq.d/                        991   0.0
SSI247 (SSI247Q) /CSM/SS/SSI2-B/SSI247Q.Seq.d/                        975   0.0
SSM687 (SSM687Q) /CSM/SS/SSM6-D/SSM687Q.Seq.d/                        959   0.0
CHN810 (CHN810Q) /CSM/CH/CHN8-A/CHN810Q.Seq.d/                        898   0.0
SSC649 (SSC649Q) /CSM/SS/SSC6-C/SSC649Q.Seq.d/                        894   0.0

Homology SSM454 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU039155) Dictyostelium discoideum slug cDNA, clone SSM454.      938   0.0    1
(AU262816) Dictyostelium discoideum vegetative cDNA clone:VS...   936   0.0    1
(AU038237) Dictyostelium discoideum slug cDNA, clone SSH454.      936   0.0    1
(C92816) Dictyostelium discoideum slug cDNA, clone SSF379.        936   0.0    1
(C92403) Dictyostelium discoideum slug cDNA, clone SSE766.        936   0.0    1
(C90262) Dictyostelium discoideum slug cDNA, clone SSI513.        936   0.0    1
(C90206) Dictyostelium discoideum slug cDNA, clone SSI247.        928   0.0    1
(C93153) Dictyostelium discoideum slug cDNA, clone SSM687.        904   0.0    1
(BJ384319) Dictyostelium discoideum cDNA clone:ddc49d04, 3' ...   898   0.0    1
(C89697) Dictyostelium discoideum slug cDNA, clone SSG154.        821   0.0    1

Homology SSM454 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso...   232   8e-60
CP001389_2024(CP001389|pid:none) Sinorhizobium fredii NGR234, co...    49   1e-04
CP000738_2005(CP000738|pid:none) Sinorhizobium medicae WSM419, c...    47   5e-04
AL591688_2147(AL591688|pid:none) Sinorhizobium meliloti 1021 com...    43   0.009
CP001349_1382(CP001349|pid:none) Methylobacterium nodulans ORS 2...    39   0.21
CP002083_3353(CP002083|pid:none) Hyphomicrobium denitrificans AT...    38   0.28
CP002157_1684(CP002157|pid:none) Maribacter sp. HTCC2170, comple...    37   0.62
CP001349_3517(CP001349|pid:none) Methylobacterium nodulans ORS 2...    33   6.8
AF143679_1(AF143679|pid:none) Homo sapiens lost in inflammatory ...    33   8.9

Homology SSM454 vs Genome