Dictyostelium discoideum cDNA Clone SSM168

Size:		1.3k
3' sequence:	TS980228
5' sequence:	TS981208
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSM168

ATCTATATTT ATATATATTT AATGATTTAA TTCTTTTTCT TTTTTTTTAA
TAAAAAAAAT CTTTTCCTTT TTTAATAAAT AATTAATAAA TTGTAAAATA
ATAATAATAA AAAAACAAAA TGGTTTATGC AAATAATAAT ATTGATCCAA
ATGCACCATG CTATGTATCT GAGTGTGCCG AACTTTTATC AGATAAAGTA
GGTGGTGTTG TTCTTGGTTG TACTGACCAA TGGTTTGCTG AATGTGTAAA
CCTCATTAAA CACTCAGCTC CAGTTTGGGA TGCTGAAAAA TATGTTGATA
CAGGTAAATG GATGGA---- ------CAAA AGAAGGTATT GTCAAAAGAA
TTGAAGTCGA CACCAATTGG TTCAAAGGCA ATTTCCCAAC ATCTTGTTCA
ATCGATGCCA TTCATTCAAG TTCTGCTCCA GATGAAACTC ATCTTCAAGA
TTATGAATGG ACAAATATTC TTCCAAACTC TCCATTATGT GGCCATCGTC
GTCATTTCTT CCAAAATGAA TTGGTAAACA ATGATAAACC TTTCACTCAT
ATTCGTTTAA ATATTTTCCC AGATGGTGGT GTTAGTAGAT TAAGAATTAA
TTGTTCATTA CCAGATTCAA AAAATAATAA TAATAATAAT AATAATAATA
ATAATAATAA TACCAGTAAT AGTTTTAAAA CCTCAGATAG ACAACAATAA
AATAATTAAT TTTTTTTTTT TTAAGAAAAT AAAAAAAAAT AAAAAAAAAA
AATAAAAAAA TTAAAACTTC CAAAAA

Translated Amino Acid Sequence SSM168

lylyifndlilflff**kksfpflinn**ivk****KNKMVYANNNIDPNAPCYVSECAE
LLSDKVGGVVLGCTDQWFAECVNLIKHSAPVWDAEKYVDTGKWM---

---KEGIVKRIEVDTNWFKGNFPTSCSIDAIHSSSAPDETHLQDYEWTNILPNSPLCGHR
RHFFQNELVNNDKPFTHIRLNIFPDGGVSRLRINCSLPDSKNNNNNNNNNNNNNTSNSFK
TSDRQQ*nn*ffff*enkkk*kkkikklklpk

Homology SSM168 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSM168 (SSM168Q) /CSM/SS/SSM1-C/SSM168Q.Seq.d/                        946   0.0
VSC259 (VSC259Q) /CSM/VS/VSC2-C/VSC259Q.Seq.d/                        587   e-166
CFI505 (CFI505Q) /CSM/CF/CFI5-A/CFI505Q.Seq.d/                        430   e-119
VFE449 (VFE449Q) /CSM/VF/VFE4-C/VFE449Q.Seq.d/                        398   e-110
SHC286 (SHC286Q) /CSM/SH/SHC2-D/SHC286Q.Seq.d/                        398   e-110
SFK338 (SFK338Q) /CSM/SF/SFK3-B/SFK338Q.Seq.d/                        398   e-110
SFJ720 (SFJ720Q) /CSM/SF/SFJ7-A/SFJ720Q.Seq.d/                        398   e-110
AFI414 (AFI414Q) /CSM/AF/AFI4-A/AFI414Q.Seq.d/                        398   e-110
SFF401 (SFF401Q) /CSM/SF/SFF4-A/SFF401Q.Seq.d/                        373   e-102
SSL394 (SSL394Q) /CSM/SS/SSL3-D/SSL394Q.Seq.d/                        369   e-101

Homology SSM168 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU262434) Dictyostelium discoideum vegetative cDNA clone:VS...   587   e-163  1
(AU038939) Dictyostelium discoideum slug cDNA, clone SSM168.      587   e-163  1
(BJ375273) Dictyostelium discoideum cDNA clone:ddc18i01, 3' ...   394   e-114  2
(BJ430994) Dictyostelium discoideum cDNA clone:ddv9b14, 3' e...   391   e-104  1
(BJ392771) Dictyostelium discoideum cDNA clone:dds28k22, 5' ...   347   e-104  3
(BJ326600) Dictyostelium discoideum cDNA clone:dda17l04, 5' ...   347   e-103  2
(BJ412687) Dictyostelium discoideum cDNA clone:ddv9b14, 5' e...   347   e-103  2
(BJ390173) Dictyostelium discoideum cDNA clone:dds21l09, 5' ...   347   e-103  2
(BJ389796) Dictyostelium discoideum cDNA clone:dds20h05, 5' ...   347   e-103  2
(BJ386855) Dictyostelium discoideum cDNA clone:dds11b02, 5' ...   327   5e-97  2

Homology SSM168 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP002271_1032(CP002271|pid:none) Stigmatella aurantiaca DW4/3-1,...    97   1e-20
CP002663_3003(CP002663|pid:none) Pusillimonas sp. T7-7, complete...    81   2e-20
AM746676_5884(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    89   3e-20
CP002177_2825(CP002177|pid:none) Acinetobacter calcoaceticus PHE...    79   4e-20
(Q4ZVG8) RecName: Full=Probable allantoicase;          EC=3.5.3....    83   1e-19
CP002522_3747(CP002522|pid:none) Acinetobacter baumannii TCDC-AB...    79   1e-19
(A3MA02) RecName: Full=Probable allantoicase;          EC=3.5.3....    79   1e-19
(B0V9T8) RecName: Full=Probable allantoicase;          EC=3.5.3....    78   2e-19
CP002080_121(CP002080|pid:none) Acinetobacter sp. DR1, complete ...    77   2e-19
CP002013_2583(CP002013|pid:none) Burkholderia sp. CCGE1002 chrom...    77   2e-19

Homology SSM168 vs Genome