Dictyostelium discoideum cDNA Clone SSK878

Size:		1.2k
3' sequence:	TM980302
5' sequence:	TM981120
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSK878

ATAAAAACAC ACATCATAAG ATGGCAACAT ATAAACCATT AGAATATTTA
GAACATTTAA AAAAGATTGT ACCAGATCTC TCTGATCAAA TCAATAATAT
TAAAGATACA TATGAAAATA AATTATGGCA TCAATTAACA AAACAAATTG
AAATGATTAT CATTTCTCCA CAATTATTGG AGAAAAAAGA GTTATTTAAT
TTTTATACAA ACTTTATCAG AGACTTTGAA AATAAATTAA GACCATTAAG
TTTAGTTGAA ATTTGTATTG CTGTTGCAAG ACAATTTGAT ACTGATGAAA
GTAGAAAATT CATTGAAACT ATTTCTCAAA AAGTTAAAAA AGATAAATCA
GCATACATTT TAACCTTATC ATATATTGCA AATATGAATT TACGTTCAGG
TGTTGCAGAA CAATTACAAG ATTGTAAAAA AACATTAGAA TTAGCAAAAG
AAGAATTACA AGGAGTCACT GGTTTAGGAT ACAATTGTTT ATTCTTCATT
TTATCGTGTT TCAACTG--- -------AAG TGAATTTTAT AAAAATGCTT
TAATGTACTT ATCATACTGT AAATTAGAAA CAATCTCTCA AGAAGAACAA
GCAAGTCTTG CTTATAATTT ATGTATTGCC GCTTTAGTTG GTGAAAATGT
TTATGGTTTT GGTGATTTAA TTGCAAATCC AATTCTTAAA GCATTAGAAG
GATCACAACA TAATTGGTTA ATTGCATTTT TAAAGGCATT CAATATTGGT
GATATTCAAC AATTTGAAGG ATTAATGTCA CAACATCGTG ATATTATTTC
AACACAAACT GCAATCACAA ATAATATGCA AAAATTAAGA CAAAAGATAT
CGATTCTCTC TTTGTTAGAA TTGGCTTTTA GAACACCATC TGACAAGAGA
TCAATTTCAT TTTCAAAGAT TGCTCAAGCC ACTAAATTAC CATTAGGTGA
GATTGAACAT CTTTTAATGA AATCACTTTC ATTAAATTTG ATCAAAGGTT
CAATCGATCA AACTGTTGAA ATCATTCACA TCACTTGGGT CACTCCAAGA
ATTTTAGATC TTAATCAAAT CAATTCAATG AATAATAGAA TCGCTGAATG
GACTGAAAAA GCAAAAACTT CTTTAAGATT AGTTGAAGAT GATACTGTTG
ATTTAGTTGC TTAAAATTTT TAATTTAAAA TAAATAAATA TAAATAAATA
AATA

Translated Amino Acid Sequence SSK878

KNTHHKMATYKPLEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLE
KKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESRKFIETISQKVKKDKSAYIL
TLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLGYNCLFFILSCFN---

---SEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALE
GSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAF
RTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILD
LNQINSMNNRIAEWTEKAKTSLRLVEDDTVDLVA*nf*fkinkyk*in

Homology SSK878 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSK878 (SSK878Q) /CSM/SS/SSK8-D/SSK878Q.Seq.d/                       2198   0.0
SFE355 (SFE355Q) /CSM/SF/SFE3-C/SFE355Q.Seq.d/                       1223   0.0
VFD383 (VFD383Q) /CSM/VF/VFD3-D/VFD383Q.Seq.d/                       1215   0.0
SFE746 (SFE746Q) /CSM/SF/SFE7-B/SFE746Q.Seq.d/                       1215   0.0
SLH687 (SLH687Q) /CSM/SL/SLH6-D/SLH687Q.Seq.d/                       1199   0.0
VFB482 (VFB482Q) /CSM/VF/VFB4-D/VFB482Q.Seq.d/                       1195   0.0
VFJ713 (VFJ713Q) /CSM/VF/VFJ7-A/VFJ713Q.Seq.d/                       1172   0.0
VFA629 (VFA629Q) /CSM/VF/VFA6-B/VFA629Q.Seq.d/                       1158   0.0
SFA265 (SFA265Q) /CSM/SF/SFA2-C/SFA265Q.Seq.d/                       1027   0.0
AFJ835 (AFJ835Q) /CSM/AF/AFJ8-B/AFJ835Q.Seq.d/                        967   0.0

Homology SSK878 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C94359) Dictyostelium discoideum slug cDNA, clone SSK878.       1257   0.0    1
(BJ400304) Dictyostelium discoideum cDNA clone:dds9n13, 3' e...  1223   0.0    1
(BJ430585) Dictyostelium discoideum cDNA clone:ddv7f21, 3' e...  1201   0.0    3
(BJ397963) Dictyostelium discoideum cDNA clone:dds10l11, 3' ...  1201   0.0    4
(BJ429514) Dictyostelium discoideum cDNA clone:ddv3d22, 3' e...  1195   0.0    2
(BJ429096) Dictyostelium discoideum cDNA clone:ddv2i08, 3' e...  1158   0.0    1
(BJ432875) Dictyostelium discoideum cDNA clone:ddv20j03, 3' ...  1126   0.0    2
(BJ327402) Dictyostelium discoideum cDNA clone:dda20f10, 5' ...   842   0.0    4
(BJ389457) Dictyostelium discoideum cDNA clone:dds18g23, 5' ...   839   0.0    4
(AU062123) Dictyostelium discoideum slug cDNA, clone SLH687.      821   0.0    5

Homology SSK878 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54NQ0) RecName: Full=26S proteasome non-ATPase regulatory subu...   428   0.0
AK117761_1(AK117761|pid:none) Arabidopsis thaliana At4g19006 mRN...   205   3e-69
EU961903_1(EU961903|pid:none) Zea mays clone 238965 26S proteaso...   199   6e-66
BT040556_1(BT040556|pid:none) Zea mays full-length cDNA clone ZM...   199   7e-66
BT039217_1(BT039217|pid:none) Zea mays full-length cDNA clone ZM...   197   7e-66
EU964603_1(EU964603|pid:none) Zea mays clone 280258 26S proteaso...   197   2e-65
EU974195_1(EU974195|pid:none) Zea mays clone 442631 26S proteaso...   197   6e-65
DQ226994_1(DQ226994|pid:none) Nicotiana benthamiana RPN9 mRNA, p...   201   1e-60
AY223111_1(AY223111|pid:none) Schistosoma japonicum clone ZZD137...   181   3e-58
AY811806_1(AY811806|pid:none) Schistosoma japonicum SJCHGC06237 ...   181   3e-58

Homology SSK878 vs Genome