Homology SSK811 vs Protein
Query= SSK811 (SSK811Q) /CSM/SS/SSK8-A/SSK811Q.Seq.d/
(579 letters)
Database: nrp_B
5,349,213 sequences; 1,732,582,204 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(P54671) RecName: Full=Histone H1; &L33457_1(L33457|pid:none) &... 95 2e-18
AJ309169_1(AJ309169|pid:none) Beta vulgaris mRNA for putative li... 43 0.011
AF170089_1(AF170089|pid:none) Nicotiana tabacum histone H1C (H1c... 42 0.014
(P40267) RecName: Full=Histone H1; &S65059(S65059) &U01890_1(U0... 42 0.014
AF544985_1(AF544985|pid:none) Nicotiana tabacum histone H1D (H1d... 40 0.091
AB032542_1(AB032542|pid:none) Nicotiana tabacum A10 mRNA for str... 40 0.091
CP002685_1334(CP002685|pid:none) Arabidopsis thaliana chromosome... 39 0.12
AF527615_1(AF527615|pid:none) Zea mays histone H1-like protein H... 39 0.20
EU959800_1(EU959800|pid:none) Zea mays clone 220060 histone H1 m... 39 0.20
CP001574_268(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 39 0.20
EU967523_1(EU967523|pid:none) Zea mays clone 304193 histone H1 m... 39 0.20
HM201888_1(HM201888|pid:none) Picea sitchensis isolate RW200 his... 38 0.27
BT070920_1(BT070920|pid:none) Picea sitchensis clone WS02759_E13... 38 0.27
HM201864_1(HM201864|pid:none) Picea sitchensis isolate CR200 his... 38 0.27
HM201863_1(HM201863|pid:none) Picea sitchensis isolate CR101 his... 38 0.27
HM201886_1(HM201886|pid:none) Picea sitchensis isolate RW100 his... 38 0.27
HM201868_1(HM201868|pid:none) Picea sitchensis isolate CR400 his... 38 0.27
HM201874_1(HM201874|pid:none) Picea sitchensis isolate KD300 his... 38 0.27
CR933357_1(CR933357|pid:none) Mini antigen, Paramecium tetraurel... 38 0.27
AK355735_1(AK355735|pid:none) Hordeum vulgare subsp. vulgare mRN... 38 0.35
X62456_1(X62456|pid:none) A.thaliana H1-1C mRNA for histone H1-1... 37 0.45
AB254813_1(AB254813|pid:none) Cryptomeria japonica mRNA for puta... 37 0.59
BT035081_1(BT035081|pid:none) Zea mays full-length cDNA clone ZM... 37 0.77
BT061693_1(BT061693|pid:none) Zea mays full-length cDNA clone ZM... 37 0.77
EU959939_1(EU959939|pid:none) Zea mays clone 220737 histone H1 m... 36 1.0
EU959342_1(EU959342|pid:none) Zea mays clone 217155 histone H1 m... 36 1.0
EU957928_1(EU957928|pid:none) Zea mays clone 1633828 histone H1 ... 36 1.0
BT123143_1(BT123143|pid:none) Picea sitchensis clone WS0467_B05 ... 36 1.3
AF514416_1(AF514416|pid:none) Lathyrus aphaca histone H1 (His1) ... 36 1.3
BT122807_1(BT122807|pid:none) Picea sitchensis clone WS0461_H23 ... 36 1.3
AC104321_24(AC104321|pid:none) Oryza sativa chromosome 3 BAC OSJ... 36 1.3
AK073668_1(AK073668|pid:none) Oryza sativa Japonica Group cDNA c... 35 1.7
AL607007_6(AL607007|pid:none) Oryza sativa genomic DNA, chromoso... 35 1.7
BT071702_1(BT071702|pid:none) Picea sitchensis clone WS0441_G18 ... 35 1.7
AF352249_1(AF352249|pid:none) Lathyrus sativus histone H1 (His1)... 35 2.2
AF514417_1(AF514417|pid:none) Pisum sativum subsp. abyssinicum h... 35 2.2
AY237960_1(AY237960|pid:none) Lens nigricans histone H1 (his1-1)... 35 2.2
AF352253_1(AF352253|pid:none) Lens culinaris histone H1 (His1) g... 35 2.2
AF352251_1(AF352251|pid:none) Lens culinaris histone H1 (His1) g... 35 2.2
AF352246_1(AF352246|pid:none) Pisum sativum histone H1 (His1) ge... 35 2.2
AK359331_1(AK359331|pid:none) Hordeum vulgare subsp. vulgare mRN... 34 5.0
AY237959_1(AY237959|pid:none) Vicia hirsuta histone H1 (his1-1) ... 34 5.0
AM111310_1(AM111310|pid:none) Plantago major mRNA for histone H1... 34 5.0
AB021872_1(AB021872|pid:none) Pisum sativum mRNA for ribosome-se... 34 5.0
BC082371_1(BC082371|pid:none) Xenopus laevis hypothetical LOC494... 33 6.5
AB029614_1(AB029614|pid:none) Nicotiana tabacum NtH1 mRNA for hi... 33 6.5
AJ224933_1(AJ224933|pid:none) Lycopersicon esculentum cv. Monema... 33 6.5
FR824184_23(FR824184|pid:none) Albugo laibachii Nc14, genomic co... 33 6.5
L29456_1(L29456|pid:none) Nicotiana tabacum histone H1 (H1C12) m... 33 6.5
D87065_1(D87065|pid:none) Triticum aestivum gene for histone H1,... 33 6.5
(P06893) RecName: Full=Histone H1B; &I51447(I51447) &M21286_5(M... 33 6.5
EF087835_1(EF087835|pid:none) Picea sitchensis clone WS02818_I14... 33 8.5
>(P54671) RecName: Full=Histone H1; &L33457_1(L33457|pid:none)
&U50904_1(U50904|pid:none)
Length = 180
Score = 94.7 bits (234), Expect = 2e-18
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +2
Query: 11 ANSNVAPDTFKTQLKLALKRLVAKGTLTMVKASYKLSEEGKKEHQATLG 157
AN NVAPDTFKTQLKLALKRLVAKGTLTMVKASYKLSEEGKKEHQATLG
Sbjct: 55 ANYNVAPDTFKTQLKLALKRLVAKGTLTMVKASYKLSEEGKKEHQATLG 103
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 961,135,893
Number of extensions: 14431370
Number of successful extensions: 36277
Number of sequences better than 10.0: 52
Number of HSP's gapped: 36272
Number of HSP's successfully gapped: 52
Length of query: 193
Length of database: 1,732,582,204
Length adjustment: 125
Effective length of query: 68
Effective length of database: 1,063,930,579
Effective search space: 72347279372
Effective search space used: 72347279372
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Dictyostelium discoideum cDNA Project Home