Dictyostelium discoideum cDNA Clone SSK802

Size:		1350
3' sequence:	TMS980302
5' sequence:	TM981120
Whole insert?:	Y
Accession #:	
Remarks:	*

Sequence SSK802

GCAAAACATT CAAATTTTGA TCCAAGTCAA AGATATCAAA CATTGAGTAA
TTTTATTTCA GATATTAATA ATAATCCAAA AGTTTCAAAA TCATTAGAAC
CATGGGGAAT TACATATCAA CCAGCTTTAA AAGTTGATGG TTATGTTTTA
AGTGCACCAA AGAATTTACC AAATGATAAT AAACGTCAAT TGAATAATAT
TAAATGGGCA TTTGTTGTTG ATCGTGATGA ATATGAGAGA ACAAGAGATT
GCCAAACCAA TCTTTATAAT TTCATAAATG AAACTGGAAT GTCACAACCA
ACAACAATTT GTTATACAGA CCCACGCGAT AAAAGACCAA TTCAATACTC
TAATATCATG GAGAATGCAA TTAAAACACA TGGTATTCAA TTCTTTTTAA
TGTTAATTCC ACAAAATCAA CCAGAAATCT ATAAAGAGAT AAAGAGAAAA
TCATTGGTTC AATTTAAAGT TTTAACTCAA TGTATTTTCC CAAGGACTTT
TTATAAAGGT AGATCAGTAA CCAATAAATT AAAACAACAA GTAATTGCAA
AGTTAGGTTA TGCACCATGG GGTCTCAATC AACAAATATT CAATGGTGTC
ATTCCAAAGA AAACAATGAT CATTGGTATC GATGTTGGTC ATAACTCTGA
TATGAGAGGT CATTCAGTAG TTGGATTCGT TGCAACTATC GATGATAAAT
TTCAAAAGTA TTTCTCAAGA TCTTTTGTTC AAAAGCGTCC TGGTAAAGAA
ATCATTGATT CTCTTGAAGA AGCAACTAAA GAAGCAATGT CAAAATATTT
TAGTTTCAAT AATTGTTTAC CAGAATTGGT TATAGTTTAT CGTGATGGTG
TTGGTGATGG TATGTTAGAT CTTGTCAATA GATCTGAAAT TGCTGCAATG
AAAAAAGGTT TTGCTGAAAC ACCATCTTCT TGGGGTATAA AACCAAAGTT
AATGTATGTC ATTGTCAAAA AGAATACAAA TGCACGTTTA TTTACTGCTG
ATCCAATTGG TAATCCTCCA GCTGGTACTT TGGTTGACTC AAAAATTACC
CATCCAAATT GGTATGATTT CTTTTTAGTC TCTCAAGTAA CTAACAATGG
TTCTGTCAAT CCAACTCATT ATCACGTTTT ATTGGATGAA CAAAAAATGC
CTGCTGATTT ATTTCAATTA TTTACTTTCC AAATGTGTCA TCTTTATTTC
AACTTTGAAA AATCTGTTCG TGTTCCAGCA ACTTGTCAAT TTGCACACAA
AATGGCATTT TTAATTGGTA GAACAGTTTT CGCTGATGTG CGCCTCAATT
ATCTGATAAA TTATTCTTCC TTTAAATTTA TTTTAATCTA AAAAAAAAAA

Translated Amino Acid Sequence SSK802

AKHSNFDPSQRYQTLSNFISDINNNPKVSKSLEPWGITYQPALKVDGYVLSAPKNLPNDN
KRQLNNIKWAFVVDRDEYERTRDCQTNLYNFINETGMSQPTTICYTDPRDKRPIQYSNIM
ENAIKTHGIQFFLMLIPQNQPEIYKEIKRKSLVQFKVLTQCIFPRTFYKGRSVTNKLKQQ
VIAKLGYAPWGLNQQIFNGVIPKKTMIIGIDVGHNSDMRGHSVVGFVATIDDKFQKYFSR
SFVQKRPGKEIIDSLEEATKEAMSKYFSFNNCLPELVIVYRDGVGDGMLDLVNRSEIAAM
KKGFAETPSSWGIKPKLMYVIVKKNTNARLFTADPIGNPPAGTLVDSKITHPNWYDFFLV
SQVTNNGSVNPTHYHVLLDEQKMPADLFQLFTFQMCHLYFNFEKSVRVPATCQFAHKMAF
LIGRTVFADVRLNYLINYSSFKFILI*kkk

Homology SSK802 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSK802 (SSK802Q) /CSM/SS/SSK8-A/SSK802Q.Seq.d/                       2654   0.0
CHG488 (CHG488Q) /CSM/CH/CHG4-D/CHG488Q.Seq.d/                       1556   0.0
CHL307 (CHL307Q) /CSM/CH/CHL3-A/CHL307Q.Seq.d/                       1554   0.0
AHO381 (AHO381Q) /CSM/AH/AHO3-D/AHO381Q.Seq.d/                       1540   0.0
SHL722 (SHL722Q) /CSM/SH/SHL7-A/SHL722Q.Seq.d/                       1530   0.0
CHS352 (CHS352Q) /CSM/CH/CHS3-C/CHS352Q.Seq.d/                       1528   0.0
AHL485 (AHL485Q) /CSM/AH/AHL4-D/AHL485Q.Seq.d/                       1528   0.0
AHF283 (AHF283Q) /CSM/AH/AHF2-D/AHF283Q.Seq.d/                       1524   0.0
AHC666 (AHC666Q) /CSM/AH/AHC6-C/AHC666Q.Seq.d/                       1524   0.0
AHL458 (AHL458Q) /CSM/AH/AHL4-C/AHL458Q.Seq.d/                       1520   0.0

Homology SSK802 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ382268) Dictyostelium discoideum cDNA clone:ddc44n01, 3' ...  1495   0.0    2
(BJ386540) Dictyostelium discoideum cDNA clone:ddc58h13, 3' ...  1489   0.0    2
(BJ379470) Dictyostelium discoideum cDNA clone:ddc34p22, 3' ...  1489   0.0    3
(BJ351032) Dictyostelium discoideum cDNA clone:dda41e22, 3' ...  1489   0.0    2
(BJ356252) Dictyostelium discoideum cDNA clone:dda59b21, 3' ...  1481   0.0    2
(BJ354411) Dictyostelium discoideum cDNA clone:dda53d16, 3' ...  1481   0.0    2
(BJ386495) Dictyostelium discoideum cDNA clone:ddc58n11, 3' ...  1479   0.0    2
(BJ349040) Dictyostelium discoideum cDNA clone:dda35n03, 3' ...  1479   0.0    3
(BJ349446) Dictyostelium discoideum cDNA clone:dda36c18, 3' ...  1471   0.0    2
(BJ385602) Dictyostelium discoideum cDNA clone:ddc55c13, 3' ...  1461   0.0    2

Homology SSK802 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116924_18(AC116924|pid:none) Dictyostelium discoideum chromoso...   603   e-171
AB533506_1(AB533506|pid:none) Ephydatia fluviatilis EfPiwiB mRNA...   242   3e-62
AB455103_1(AB455103|pid:none) Botryllus primigenus BpPiwi mRNA f...   238   5e-61
(A6N7Y9) RecName: Full=Piwi-like protein 1;  &EF619343_1(EF61934...   235   4e-60
AY493987_1(AY493987|pid:none) Podocoryne carnea Cniwi (Cniwi) mR...   235   4e-60
HQ012500_1(HQ012500|pid:none) Macaca mulatta piwi like-1 protein...   233   3e-59
GQ329718_1(GQ329718|pid:none) Sus scrofa piwi-like 1 mRNA, compl...   231   6e-59
EU413991_1(EU413991|pid:none) Oryzias latipes piwi-like protein ...   231   7e-59
HM749787_1(HM749787|pid:none) Coturnix coturnix piwi-like protei...   231   1e-58
AF104260_1(AF104260|pid:none) Homo sapiens HIWI mRNA, complete c...   229   2e-58

Homology SSK802 vs Genome