Homology SSK759 vs Protein

Query= SSK759 (SSK759Q) /CSM/SS/SSK7-C/SSK759Q.Seq.d/
         (594 letters)

Database: nrp_B
           5,349,213 sequences; 1,732,582,204 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY812065_1(AY812065|pid:none) Schistosoma japonicum SJCHGC09327 ...    33   9.2

>AY812065_1(AY812065|pid:none) Schistosoma japonicum SJCHGC09327
           protein mRNA, partial cds.
          Length = 417

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 274 KSVFIKIKCSLVFLVLI*FNVSFIIDTLYIHSFKWFIKSISFV*ILVCCS 125
           KS  I +      L+LI FN++ IID + ++  +W +  +S + + V CS
Sbjct: 155 KSYLIGLNSLSSLLLLILFNITLIIDFILLNEKRWLLYILSILSLTVSCS 204

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 5349213
Number of Hits to DB: 683,968,572
Number of extensions: 9027642
Number of successful extensions: 22275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21861
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,732,582,204
Length adjustment: 125
Effective length of query: 73
Effective length of database: 1,063,930,579
Effective search space: 77666932267
Effective search space used: 77666932267
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)




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