Dictyostelium discoideum cDNA Clone SSK562

Size:		696
3' sequence:	TM980223
5' sequence:	TM981119
Whole insert?:	Y
Accession #:	
Remarks:	*

Sequence SSK562

CACACCTCAA GTAAATACAT CATATAAATT TAGAATATTA TATAATGAAT
TCAATGATTA GAAATGTACT TAAAACTACA ACAAATGTTG GTTTAAAAAA
TACAAGTGGT TTAGTTTTTA GACAAACAAA TGTTAATTTT TTAAAATCCT
CAACAACCAC AACAGCAATT AAAAGTGGAA TTTTTGGAGA ACTAATTACA
AAAAGAAATT ATCATGAAAG AGTATTGGAT CATTATAATA ACCCAAGAAA
TATTGGGTCA TTCGATAAGA AAGATATCGA TGTTGGTACT GCAACCGTTG
GTGCACCAGC ATGTGGTGAC GTTATGAAAA TTCAAATCAA GGTAAAGGAA
AACATTGTTG TCGATGTTTG TTTCAAAACT TTTGGTTGTG GTTCTGCAAT
CGCTTCAAGT TCATTGGCAA CTGAATGGGT AAAAGGTAAA ACATTAGATC
AATGTCTCGA AATTAAAAAT ACCGATATCG CAAAACATCT CTCACTTCCA
CCAGTAAAAA TGCATTGTAG TATGCTTGCC GAACAAGCTA TCAAAAGAGC
TATCTATGAT TACAAAGTTA AACATGAAAA ATTAAATTCA TCTGAACAAA
CTACAATTGA AACTACTGCA TCTTTGTAAA TAATTTTAAT AATTTAAAAA
AATAAATAAA AAAATAAAAA AATAAAAAAA AAATAAAAAA ATATAT

Translated Amino Acid Sequence SSK562

hlk*IHHINLEYYIMNSMIRNVLKTTTNVGLKNTSGLVFRQTNVNFLKSSTTTTAIKSGI
FGELITKRNYHERVLDHYNNPRNIGSFDKKDIDVGTATVGAPACGDVMKIQIKVKENIVV
DVCFKTFGCGSAIASSSLATEWVKGKTLDQCLEIKNTDIAKHLSLPPVKMHCSMLAEQAI
KRAIYDYKVKHEKLNSSEQTTIETTASL*iilii*knk*knkkikkk*kni

Homology SSK562 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


VSD315 (VSD315Q) /CSM/VS/VSD3-A/VSD315Q.Seq.d/                       1279   0.0
SSK562 (SSK562Q) /CSM/SS/SSK5-C/SSK562Q.Seq.d/                       1279   0.0
SSI841 (SSI841Q) /CSM/SS/SSI8-B/SSI841Q.Seq.d/                       1166   0.0
SSJ623 (SSJ623Q) /CSM/SS/SSJ6-A/SSJ623Q.Seq.d/                       1116   0.0
SSH360 (SSH360Q) /CSM/SS/SSH3-C/SSH360Q.Seq.d/                        565   e-160
SSC569 (SSC569Q) /CSM/SS/SSC5-C/SSC569Q.Seq.d/                         42   0.011
CFJ759 (CFJ759Q) /CSM/CF/CFJ7-C/CFJ759Q.Seq.d/                         38   0.17
VSJ817 (VSJ817Q) /CSM/VS/VSJ8-A/VSJ817Q.Seq.d/                         36   0.69
VSF836 (VSF836Q) /CSM/VS/VSF8-B/VSF836Q.Seq.d/                         36   0.69
VFH447 (VFH447Q) /CSM/VF/VFH4-B/VFH447Q.Seq.d/                         36   0.69

Homology SSK562 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU263826) Dictyostelium discoideum vegetative cDNA clone:VS...  1279   0.0    1
(C94224) Dictyostelium discoideum slug cDNA, clone SSK562.       1253   0.0    1
(C90609) Dictyostelium discoideum slug cDNA, clone SSI841.       1166   0.0    1
(AU263825) Dictyostelium discoideum vegetative cDNA clone:VS...  1049   0.0    1
(AU074391) Dictyostelium discoideum slug cDNA, clone SSK562.      476   e-130  1
(AU073496) Dictyostelium discoideum slug cDNA, clone SSH360.      285   e-123  2
(AU074144) Dictyostelium discoideum slug cDNA, clone SSJ623.      361   3e-95  1
(GR572263) CBTG610.g1 CBTG Dictyostelium purpureum 12 hr veg...   297   3e-93  2
(GR572129) CBTG514.g1 CBTG Dictyostelium purpureum 12 hr veg...   297   3e-93  2
(GR572262) CBTG610.b1 CBTG Dictyostelium purpureum 12 hr veg...   291   2e-91  2

Homology SSK562 vs Protein

Sequences producing significant alignments:                      (bits) Value


GN111776_1(GN111776|pid:none) Sequence 16557 from Patent WO20090...   202   1e-50
EU952383_1(EU952383|pid:none) Zea mays clone 1279145 nifU-like N...   202   1e-50
BT040469_1(BT040469|pid:none) Zea mays full-length cDNA clone ZM...   202   2e-50
GN111528_1(GN111528|pid:none) Sequence 16309 from Patent WO20090...   200   5e-50
GN111710_1(GN111710|pid:none) Sequence 16491 from Patent WO20090...   199   1e-49
GN111536_1(GN111536|pid:none) Sequence 16317 from Patent WO20090...   199   1e-49
FR824131_3(FR824131|pid:none) Albugo laibachii Nc14, genomic con...   198   2e-49
BT091656_1(BT091656|pid:none) Soybean clone JCVI-FLGm-8B21 unkno...   198   2e-49
EF676161_1(EF676161|pid:none) Picea sitchensis clone WS02715_O21...   198   2e-49
GN111526_1(GN111526|pid:none) Sequence 16307 from Patent WO20090...   197   3e-49

Homology SSK562 vs Genome