Dictyostelium discoideum cDNA Clone SSJ567

Size:		731
3' sequence:	RY980129
5' sequence:	TM981117
Whole insert?:	Y
Accession #:	
Remarks:	*

Sequence SSJ567

AATTAAAGAA AGAGATGAAG CAGAAGCAAG TTTAGGACCA GGAACAGTTA
GAACAGTACA ATTATCACAT CAAGTTAGAA CAGCAATTAT AGATGTTAAA
GGAGAATGTA ATAAATTACA AAGAATGCAC GATAAATCAG AAGAAAGATA
TAAAAGAGAN TAAAGAAAAT CCNGAAACAA AAGANATTAG ATTTAACAAG
AGAAACATGT GAATTAGCAT GGGCTCATGT AAAAGAATTA GAATTACAAA
ATAAACAAAG AGGTGGTGAT GGTAGTAAAT TCATTCCAAG AGACCATANT
CAATCATCAT CAAATGCATC TGGTACAAAG CAATTACCAG ATTTAGATAA
TGATGACTTT AAAGAATTAC TTAGAAATGA TAAACAAATT GATGGTGTTT
TAGATCAAAT CTCTGAACAA TTGAAAATCA CTGAAAATAT TGCAAATGAA
ATGGGTAAAG CTGCAACTAG ACAAGGTGTC CTTTTGGATA CTCTCAATGA
TAAAGCTGAT GTTTTAGATG AAAAATTGGA AAATATAAAT ATTCGNCTTG
GAAAAATGAT TAAAGATATT CGTAAAGCTG ATAGATTCAT TATTGATGTC
ATTTTAATTG TAGTTTTATT AGGTATTATT GGTGCTATCG TTAGTATTGT
TAGAAAATAA GAAAATAAAT AAATAAAAAA AAAAAAAAGT TTAATTTTTT
TTATTTTTTT TATCTGGTTA TATAAAAA

Translated Amino Acid Sequence SSJ567

n*rkr*srskfrtrns*nstiitss*nsnyrc*rrm**itknar*irrki*KRXKKIXKQ
KXLDLTRETCELAWAHVKELELQNKQRGGDGSKFIPRDHXQSSSNASGTKQLPDLDNDDF
KELLRNDKQIDGVLDQISEQLKITENIANEMGKAATRQGVLLDTLNDKADVLDEKLENIN
IRLGKMIKDIRKADRFIIDVILIVVLLGIIGAIVSIVRK*enk*ikkkksliffiffiwl
yk

Homology SSJ567 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSJ567 (SSJ567Q) /CSM/SS/SSJ5-C/SSJ567Q.Seq.d/                       1306   0.0
SSH228 (SSH228Q) /CSM/SS/SSH2-B/SSH228Q.Seq.d/                        850   0.0
FC-IC1136 (FC-IC1136Q) /CSM/FC-IC/FC-IC1136Q.Seq.d/                   456   e-127
SSE520 (SSE520Q) /CSM/SS/SSE5-A/SSE520Q.Seq.d/                        252   6e-66
SSF518 (SSF518Q) /CSM/SS/SSF5-A/SSF518Q.Seq.d/                         42   0.012
CFF691 (CFF691Q) /CSM/CF/CFF6-D/CFF691Q.Seq.d/                         40   0.046
AFN193 (AFN193Q) /CSM/AF/AFN1-D/AFN193Q.Seq.d/                         40   0.046
VFL366 (VFL366Q) /CSM/VF/VFL3-C/VFL366Q.Seq.d/                         38   0.18
VFI649 (VFI649Q) /CSM/VF/VFI6-C/VFI649Q.Seq.d/                         38   0.18
SSM683 (SSM683Q) /CSM/SS/SSM6-D/SSM683Q.Seq.d/                         38   0.18

Homology SSJ567 vs DNA

Sequences producing significant alignments:                    (bits)  Value  N


AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 m...    42  0.011  8
AL807238|AL807238.5 Mouse DNA sequence from clone RP23-476F...    34  0.027  6
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 m...    40  0.030  9
AP003193|AP003193.2 Clostridium perfringens str. 13 DNA, co...    40  0.11  10
BX168785|BX168785.1 Danio rerio genomic clone DKEY-175K9, g...    40  0.14  2
AF111943|AF111943.1 Dictyostelium discoideum AX4 developmen...    42  0.19  2
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14...    42  0.21  7
AC138973|AC138973.2 Homo sapiens 3 BAC CTD-2532M17 (Cal Tec...    36  0.26  5
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, compl...    32  0.26  9
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          46  0.31  6

Homology SSJ567 vs Protein

Sequences producing significant alignments:                      (bits) Value


HE575323_1233(HE575323|pid:none) Trypanosoma congolense IL3000 a...    55   3e-06
AC150891_8(AC150891|pid:none) Medicago truncatula chromosome 2 c...    49   3e-04
AK357072_1(AK357072|pid:none) Hordeum vulgare subsp. vulgare mRN...    47   7e-04
AC093956_4(AC093956|pid:none) Oryza sativa (japonica cultivar-gr...    47   0.001
(Q9SF29) RecName: Full=Syntaxin-71;          Short=AtSYP71;  &AC...    46   0.002
BT123841_1(BT123841|pid:none) Picea sitchensis clone WS04717_N17...    46   0.002
FJ664269_1(FJ664269|pid:none) Annona cherimola syntaxin-71 (SYP7...    45   0.003
BT098344_1(BT098344|pid:none) Soybean clone JCVI-FLGm-23G23 unkn...    45   0.003
DQ653131_1(DQ653131|pid:none) Arabidopsis thaliana clone 0000017...    44   0.006
AL132953_4(AL132953|pid:none) Arabidopsis thaliana DNA chromosom...    44   0.006

Homology SSJ567 vs Genome