Dictyostelium discoideum cDNA Clone SSJ524

Size:		1.3k
3' sequence:	TMS980129
5' sequence:	*
Whole insert?:	*
Accession #:	
Remarks:	*

Sequence SSJ524

---------- TTCACTATCT GAACAAAATT TAGTTGATTG CTCTGGTCCA
GAAGAAAACT TTGGTTGTGA TGGTGGTTTA ATGAATAATG CATTTGATTA
TATCATTAAA AACAAGGGTA TTGACACTGA AAGTAGTTAT CCATATACTG
CTGAAACTGG TTCAACATGT TTATTCAATA AATCTGATAT TGGTGCAACC
ATTAAAGGTT ATGTTAACAT TACTGCCGGT TCAGAGATTT CATTAGAGAA
TGGTGCTCAA CATGGTCCAG TATCTGTTGC AATTGATGCT TCCCATAATA
GTTTCCAACT CTATACATCT GGTATCTATT ATGAGCCAAA ATGTTCTCCA
ACTGAATTGG ATCATGGTGT TTTAGTTGTT GGTTATGGTG TTCAAGGTAA
AGATGATGAA GGTCCAGTAT TAAACAGAAA ACAAACCATT GTTATCCACA
AGAATGAAGA TAATAAAGTT GAATCCTCTG ATGATTCATC TGATAGTGTT
AGACCAAAGG CAAATAATTA TTGGATCGTT AAAAATTCAT GGGGTACCTC
ATGGGGTATA AAAGGTTACA TTTTAATGTC AAAGGATAGA AAGAATAATT
GTGGTATTGC ATCAGTTAGC TCTTATCCAC TTGCCTAGAT TTATGGTTCC
AAAATGAATA GGAGAATGTT TGGATCTATC TAGTAACCTG AAATGTTTTT
CTATTAAAAA AATAAAAATA AAAATAATAA TTTCTAATTG TAAA

Translated Amino Acid Sequence SSJ524

---SLSEQNLVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNK
SDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELD
HGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSW
GTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknk
nnnf*l*

Homology SSJ524 vs CSM-cDNA

Sequences producing significant alignments:                      (bits) Value


SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1378   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1374   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1362   0.0
CFK280 (CFK280Q) /CSM/CF/CFK2-D/CFK280Q.Seq.d/                       1356   0.0
AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/                       1356   0.0
AFK758 (AFK758Q) /CSM/AF/AFK7-C/AFK758Q.Seq.d/                       1342   0.0
SFK650 (SFK650Q) /CSM/SF/SFK6-C/SFK650Q.Seq.d/                       1332   0.0
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/                       1324   0.0
AFK761 (AFK761Q) /CSM/AF/AFK7-C/AFK761Q.Seq.d/                       1298   0.0
AFM621 (AFM621Q) /CSM/AF/AFM6-A/AFM621Q.Seq.d/                       1294   0.0

Homology SSJ524 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine p...  1378   0.0    2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encod...   961   0.0    5
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA...   595   0.0    2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase...    88   2e-54  7
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase...    76   1e-49  6
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 ma...    88   7e-39  7
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase...    82   9e-16  3
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine ...    56   1e-15  4
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase...    46   6e-11  4
BQ834906|BQ834906.1 Po_ad_04H08_TEXF1 Psoroptes ovis mixed P...    50   5e-06  3

Homology SSJ524 vs Protein

Sequences producing significant alignments:                      (bits) Value


(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   414   e-114
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   227   5e-58
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   227   5e-58
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   213   6e-54
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   212   2e-53
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   211   3e-53
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   209   9e-53
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   206   1e-51
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like...   206   1e-51
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   204   4e-51

Homology SSJ524 vs Genome