Homology SSJ189 vs DNA
Query= SSJ189 (SSJ189Q) /CSM/SS/SSJ1-D/SSJ189Q.Seq.d/
(481 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrt.seq;
ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
ddbjbct7.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq;
ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq;
ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq;
ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss8.seq;
ddbjgss9.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq; ddbjpat1.seq; ddbjpat2.seq;
ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq;
ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq;
ddbjsts1.seq; ddbjsts2.seq; ddbjsts3.seq;
/db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/a/new_est_btra1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/a/new_est_cele1.seq; est_crei1.seq; est_cint1.seq;
/db/DDBJNEW.DATA/a/new_est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/a/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/a/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/a/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/a/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; /db/DDBJNEW.DATA/a/new_est_rest1.seq
32,244,805 sequences; U,562,868,657 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 ma... 410 e-129 4
BZ389512|BZ389512.1 EINAJ30TF EI_10_12_KB Entamoeba invadens... 34 0.086 2
BZ399331|BZ399331.1 EINAV49TF EI_10_12_KB Entamoeba invadens... 34 0.086 2
BX005353|BX005353.5 Zebrafish DNA sequence *** SEQUENCING IN... 40 0.13 3
AP001666|AP001666.1 Homo sapiens genomic DNA, chromosome 21q... 46 0.45 1
BS000023|BS000023.1 Pan troglodytes chromosome 22 clone:PTB-... 46 0.45 1
AP001344|AP001344.1 Homo sapiens genomic DNA, chromosome 21q... 46 0.45 1
BS000022|BS000022.1 Pan troglodytes chromosome 22 clone:PTB-... 46 0.45 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 ma... 34 1.5 10
AL109865|AL109865.36 Human DNA sequence from clone GS1-120K1... 38 3.8 6
BX914216|BX914216.2 Zebrafish DNA sequence *** SEQUENCING IN... 34 4.1 5
AC113870|AC113870.5 Rattus norvegicus clone CH230-291M19, **... 34 4.9 6
AC006500|AC006500.4 Homo sapiens, clone hRPK.31_A_1, complet... 38 5.6 2
BG600856|BG600856.1 EST505751 cSTS Solanum tuberosum cDNA cl... 30 6.2 3
AC112287|AC112287.4 Rattus norvegicus clone CH230-80A3, *** ... 36 6.6 4
AL928753|AL928753.3 Oryza sativa chromosome 12, . BAC OSJNBb... 42 7.1 1
AC136272|AC136272.2 Rattus norvegicus clone CH230-92L10, ***... 42 7.1 1
AC099471|AC099471.6 Rattus norvegicus clone CH230-221M23, **... 42 7.1 1
BP514797|BP514797.1 Hydra magnipapillata cDNA, clone:hydmg_0... 42 7.1 1
AP005463|AP005463.1 Oryza sativa (japonica cultivar-group) g... 42 7.1 1
CK467333|CK467333.1 938622 MARC 4PIG Sus scrofa cDNA 5', mRN... 42 7.1 1
CK465231|CK465231.1 936318 MARC 4PIG Sus scrofa cDNA 3', mRN... 42 7.1 1
AZ524447|AZ524447.1 231PbB08 Pb MBN #21 Plasmodium berghei g... 42 7.1 1
AP004678|AP004678.1 Oryza sativa (japonica cultivar-group) g... 42 7.1 1
AC021654|AC021654.25 Homo sapiens 3 BAC RP11-192K2 (Roswell ... 42 7.1 1
AC079057|AC079057.1 Homo sapiens chromosome 18 clone RP11-21... 42 7.1 1
AC025432|AC025432.4 Homo sapiens chromosome 3 clone CTB-124C... 42 7.1 1
AC064870|AC064870.5 Homo sapiens BAC clone RP11-575E20 from ... 34 7.1 6
U67490|U67490.1 Methanococcus jannaschii section 32 of 150 o... 40 7.7 2
AL353703|AL353703.3 Human DNA sequence *** SEQUENCING CANCEL... 34 8.7 3
AC068698|AC068698.2 Homo sapiens chromosome 14 clone RP11-55... 36 8.8 4
>AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map
complement(6807709-6776860) strain AX4, complete
sequence.
Length = 30849
Score = 410 bits (207), Expect(4) = e-129
Identities = 249/263 (94%)
Strand = Plus / Minus
Query: 4 ttatccattggttaaatttatggttggattatttcaaaggttttatccgggatcattccc 63
|||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||| |
Sbjct: 1234 ttatccattggttaaatttatggttgaattatttcaaaagttttatccagaatcattaca 1175
Query: 64 aaaatgtttaattttaaatgccccttgggtctttatgggaatttggcatttcctcaaaca 123
||||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||
Sbjct: 1174 aaaatgtttaattttaaatgcaccttggatctttatgggaatttggcatatcatcaaaca 1115
Query: 124 ttggttggatccaaatcccgcttcaaaagtttcttttgtcaaaactaaacaattgggtga 183
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1114 ttggttagatccaaataccgcttcaaaagtttcttttgtcaaaactaaacaattggttga 1055
Query: 184 ttatattccaaaaggtcaattagaaagttcttatggtggaacaagtacatttaaatatac 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ttatattccaaaagatcaattagaaagttcttatggtggaacaagtacatttaaatatac 995
Query: 244 ttatgaaggaaaagaagtaaagt 266
|||||||||||||||||||||||
Sbjct: 994 ttatgaaggaaaagaagtaaagt 972
Score = 75.8 bits (38), Expect(4) = e-129
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 384 ctttatccttcaattaccgaaatctccacttttaatta 421
||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ctttatccttcaattaccgaaatctccacttttaatta 817
Score = 42.1 bits (21), Expect(4) = e-129
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 461 tgtatatataatttcttaaaa 481
|||||||||||||||||||||
Sbjct: 777 tgtatatataatttcttaaaa 757
Score = 30.2 bits (15), Expect(4) = e-129
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 360 aataatttcaaaacc 374
|||||||||||||||
Sbjct: 878 aataatttcaaaacc 864
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 10,181,124
Number of Sequences: 32244805
Number of extensions: 10181124
Number of successful extensions: 833449
Number of sequences better than 10.0: 62
length of query: 481
length of database: U,562,868,657
effective HSP length: 22
effective length of query: 459
effective length of database: T,853,482,947
effective search space: 16915748672673
effective search space used: 16915748672673
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home