Homology SSJ101 vs DNA
Query= SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/
(873 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum3.seq; ddbjhum4.seq;
ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrt.seq;
ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; /db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq;
ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq;
ddbjbct7.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq;
ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq;
ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq;
ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq;
ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq;
ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq;
ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq;
ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss8.seq;
ddbjgss9.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq; ddbjpat1.seq; ddbjpat2.seq;
ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq;
ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq;
ddbjsts1.seq; ddbjsts2.seq; ddbjsts3.seq;
/db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_btra1.seq;
/db/DDBJNEW.DATA/a/new_est_btra1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/a/new_est_cele1.seq; est_crei1.seq; est_cint1.seq;
/db/DDBJNEW.DATA/a/new_est_cint1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_ggal1.seq;
/db/DDBJNEW.DATA/a/new_est_ggal1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_hvul1.seq; /db/DDBJNEW.DATA/a/new_est_hvul1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_mtru1.seq;
/db/DDBJNEW.DATA/a/new_est_mtru1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_stro1.seq; est_taes1.seq;
/db/DDBJNEW.DATA/a/new_est_taes1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; /db/DDBJNEW.DATA/a/new_est_rest1.seq
32,244,805 sequences; U,562,868,657 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value N
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, c... 1168 0.0 4
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 ma... 1168 0.0 7
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 ma... 38 0.007 11
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clon... 50 0.054 1
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12,... 50 0.054 1
CA855068|CA855068.1 PfESToac46b06.y1 Plasmodium falciparum 3... 50 0.054 1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 ma... 40 0.14 9
AC099694|AC099694.12 Mus musculus, clone RP23-195D9, complet... 48 0.21 1
BE217634|BE217634.1 MD0264 Meloidogyne incognita J2 (#MD99-1... 48 0.21 1
CD951782|CD951782.1 SAY_66 GeneTag2 Zea mays cDNA, mRNA sequ... 48 0.21 1
CC755907|CC755907.1 ZMMBBb0141C12.r ZMMBBb Zea mays subsp. m... 46 0.84 1
AP004967|AP004967.1 Lotus corniculatus var. japonicus genomi... 46 0.84 1
AG232038|AG232038.1 Lotus corniculatus var. japonicus DNA, c... 46 0.84 1
CG678399|CG678399.1 ZMMBBb0291B19.f ZMMBBb Zea mays subsp. m... 46 0.84 1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 ma... 34 0.98 9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 ma... 34 1.4 13
AE017080|AE017080.1 Oryza sativa (japonica cultivar-group) c... 32 1.5 2
AC090441|AC090441.3 Oryza sativa chromosome 10 clone OSJNBb0... 32 1.6 2
BH149983|BH149983.1 ENTQD93TF Entamoeba histolytica Sheared ... 34 2.1 2
AZ683582|AZ683582.1 ENTKK47TR Entamoeba histolytica Sheared ... 34 2.1 2
AZ528430|AZ528430.1 ENTCO24TR Entamoeba histolytica Sheared ... 34 2.1 2
AZ535744|AZ535744.1 ENTCQ25TR Entamoeba histolytica Sheared ... 34 2.1 2
BC005670|BC005670.1 Mus musculus tudor domain containing 3, ... 36 2.1 3
BH427171|BH427171.1 BOGEG11TR BOGE Brassica oleracea genomic... 32 2.2 2
AC139526|AC139526.22 Medicago truncatula clone mth2-9b23, co... 38 2.6 7
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 ma... 34 3.0 9
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 ma... 34 3.2 5
BH149389|BH149389.1 ENTPD24TF Entamoeba histolytica Sheared ... 44 3.3 1
AZ549277|AZ549277.1 ENTGH22TF Entamoeba histolytica Sheared ... 44 3.3 1
AZ668863|AZ668863.1 ENTJR88TF Entamoeba histolytica Sheared ... 44 3.3 1
AG221394|AG221394.1 Lotus corniculatus var. japonicus DNA, c... 44 3.3 1
AZ675253|AZ675253.1 ENTKG96TR Entamoeba histolytica Sheared ... 44 3.3 1
AC121238|AC121238.17 Medicago truncatula clone mth2-34p9, co... 34 4.7 5
AC135363|AC135363.2 Mus musculus chromosome UNK clone RP23-3... 40 4.8 6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma... 38 5.1 10
CD017930|CD017930.1 NXCI_150_D11_F NXCI (Nsf Xylem Compressi... 34 5.2 2
AP004556|AP004556.3 Oryza sativa (japonica cultivar-group) g... 30 5.8 2
AL731640|AL731640.3 Oryza sativa genomic DNA, chromosome 4, ... 30 5.8 2
AP004655|AP004655.2 Oryza sativa (japonica cultivar-group) g... 30 5.8 2
AP005512|AP005512.3 Oryza sativa (japonica cultivar-group) g... 30 5.9 2
AP005415|AP005415.2 Oryza sativa (japonica cultivar-group) g... 30 5.9 2
Z81586|Z81586.1 Caenorhabditis elegans cosmid T05F1. 40 6.5 4
AL591031|AL591031.3 Human DNA sequence from clone RP11-151D1... 32 6.6 7
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 ... 38 7.3 5
AX488704|AX488704.1 Sequence 6004 from Patent WO02053728. 32 7.9 2
AX240808|AX240808.1 Sequence 46 from Patent WO0160975. 32 7.9 2
AC132558|AC132558.2 Rattus norvegicus clone CH230-15F10, ***... 38 8.0 8
AC114003|AC114003.4 Mus musculus BAC clone RP23-174C24 from ... 32 8.9 8
AC100333|AC100333.1 Mus musculus clone RP23-126H4, LOW-PASS ... 36 9.4 3
AC019126|AC019126.4 Homo sapiens chromosome 11 clone RP11-55... 42 13 1
AC115500|AC115500.5 Rattus norvegicus clone CH230-116H12, WO... 42 13 1
AC121995|AC121995.2 Mus musculus BAC clone RP24-310M4 from 7... 42 13 1
AC147244|AC147244.1 Mus musculus chromosome UNK clone RP23-4... 42 13 1
AC099755|AC099755.2 Homo sapiens chromosome 1 clone RP11-434... 42 13 1
AC132192|AC132192.3 Homo sapiens chromosome 11, clone CTD-23... 42 13 1
CF897574|CF897574.1 A0226H06-5 NIA Mouse Embryonic Germ Cell... 42 13 1
CD563132|CD563132.1 B0459C02-5 NIA Mouse E6.5 Whole Embryo c... 42 13 1
AC100893|AC100893.7 Mus musculus chromosome 8 clone RP23-68I... 42 13 1
AA636313|AA636313.1 vq76e09.s1 Knowles Solter mouse 2 cell M... 42 13 1
CD805021|CD805021.1 UI-M-GW0-cih-i-07-0-UI.r1 NIH_BMAP_GW0 M... 42 13 1
AX870544|AX870544.1 Sequence 5449 from Patent EP1074617. 42 13 1
BD150606|BD150606.1 Primer for synthesizing full-length cDNA... 42 13 1
BD126826|BD126826.1 Primer for synthesizing full-length cDNA... 42 13 1
AL035476|AL035476.7 Plasmodium falciparum MAL4P3. 42 13 1
AA647849|AA647849.1 vq80d11.s1 Knowles Solter mouse 2 cell M... 42 13 1
BM785921|BM785921.1 K-EST0064488 S9SNU601 Homo sapiens cDNA ... 42 13 1
CQ335856|CQ335856.1 Sequence 9950 from Patent WO0157275. 42 13 1
CQ261702|CQ261702.1 Sequence 9963 from Patent WO0157277. 42 13 1
CQ223714|CQ223714.1 Sequence 10553 from Patent WO0157273. 42 13 1
CQ140388|CQ140388.1 Sequence 10410 from Patent WO0157276. 42 13 1
CQ101397|CQ101397.1 Sequence 10256 from Patent WO0157272. 42 13 1
BE569699|BE569699.1 601332302F1 NCI_CGAP_Mam6 Mus musculus c... 42 13 1
BE874685|BE874685.1 601485810F1 NIH_MGC_69 Homo sapiens cDNA... 42 13 1
AL109737|AL109737.1 Arabidopsis thaliana DNA *** SEQUENCING ... 42 13 1
AL109819|AL109819.1 Arabidopsis thaliana DNA chromosome 4, B... 42 13 1
BJ611409|BJ611409.1 Physcomitrella patens subsp. patens cDNA... 42 13 1
CD565645|CD565645.1 B0497H12-5 NIA Mouse E6.5 Whole Embryo c... 42 13 1
AX881081|AX881081.1 Sequence 15986 from Patent EP1074617. 42 13 1
BD158761|BD158761.1 Primer for synthesizing full-length cDNA... 42 13 1
BD012349|BD012349.1 Genes related to stomach cancer. 42 13 1
AK027892|AK027892.1 Homo sapiens cDNA FLJ14986 fis, clone Y7... 42 13 1
BJ600326|BJ600326.1 Physcomitrella patens subsp. patens cDNA... 42 13 1
BY080592|BY080592.1 Mus musculus cDNA, RIKEN full-length enr... 42 13 1
H83103|H83103.1 yq46h07.r1 Soares fetal liver spleen 1NFLS H... 42 13 1
BT004630|BT004630.1 Arabidopsis thaliana At4g08320 gene, com... 42 13 1
AL139324|AL139324.19 Human DNA sequence from clone RP11-309I... 42 13 1
AC093951|AC093951.5 Rattus norvegicus clone CH230-1K21, WORK... 42 13 1
CE676838|CE676838.1 tigr-gss-dog-17000313943138 Dog Library ... 42 13 1
BE570737|BE570737.1 601329102F1 NCI_CGAP_Mam6 Mus musculus c... 42 13 1
BD137318|BD137318.1 Human nucleic acid sequence originating ... 42 13 1
AX018012|AX018012.1 Sequence 247 from Patent WO9946375. 42 13 1
CC135939|CC135939.1 NDL.47M15.SP6 Notre Dame Liverpool Aedes... 42 13 1
BF968872|BF968872.1 602270844F1 NIH_MGC_84 Homo sapiens cDNA... 42 13 1
BF045355|BF045355.1 BP250025A20B7 Soares normalized bovine p... 42 13 1
AL158032|AL158032.32 Human DNA sequence from clone RP11-101P... 42 13 1
BQ925547|BQ925547.1 AGENCOURT_8765754 NIH_MGC_130 Mus muscul... 42 13 1
AU154589|AU154589.1 Homo sapiens cDNA clone:NT2RP4001564, 3'... 42 13 1
AC016162|AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3... 42 13 1
BC053524|BC053524.1 Mus musculus importin 7, mRNA (cDNA clon... 42 13 1
AJ278435|AJ278435.1 Mus musculus Ranbp7 gene, Staf gene and ... 42 13 1
>M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete
cds.
Length = 2377
Score = 1168 bits (589), Expect(4) = 0.0
Identities = 589/589 (100%)
Strand = Plus / Plus
Query: 151 acattgtggcggacgtccaaataagattaaagtcatctgtgttccatcaccaaaaggtac 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1595 acattgtggcggacgtccaaataagattaaagtcatctgtgttccatcaccaaaaggtac 1654
Query: 211 ttgcaagactgttcaatgtccaaaaggttacaaatgcaaactctatgctgatggtccaac 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 ttgcaagactgttcaatgtccaaaaggttacaaatgcaaactctatgctgatggtccaac 1714
Query: 271 atgtgtaaagattgaaaaaccaaaatgtctcacttgtaaagatatgcattgtgagtcaaa 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1715 atgtgtaaagattgaaaaaccaaaatgtctcacttgtaaagatatgcattgtgagtcaaa 1774
Query: 331 tggattactctgtgtcttgactccacaaaagaagactgatgaagaatgttgtccaattat 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 tggattactctgtgtcttgactccacaaaagaagactgatgaagaatgttgtccaattat 1834
Query: 391 tccaatctgtatcaatccatcaactattgccgcatccactattgccactacaactgcatc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 tccaatctgtatcaatccatcaactattgccgcatccactattgccactacaactgcatc 1894
Query: 451 aactcgtcactcaactgcctcaacaattgcctcattagtcactggtaccacaagtggtgg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1895 aactcgtcactcaactgcctcaacaattgcctcattagtcactggtaccacaagtggtgg 1954
Query: 511 tggtggtatgggttcatttggtggtcgatccgatgaagaatcaagtgatccaaatgctat 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1955 tggtggtatgggttcatttggtggtcgatccgatgaagaatcaagtgatccaaatgctat 2014
Query: 571 acttggtctctttgaagacgatattttctggggtgataatgatgaatactttagtgataa 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2015 acttggtctctttgaagacgatattttctggggtgataatgatgaatactttagtgataa 2074
Query: 631 ctaccgttatgttgatgaagaagatattgatgaagatttcaatggtaatgatgaatttga 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2075 ctaccgttatgttgatgaagaagatattgatgaagatttcaatggtaatgatgaatttga 2134
Query: 691 aattgatgttgaaggtgatttccaagaagatgatttcgaagaagaatat 739
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2135 aattgatgttgaaggtgatttccaagaagatgatttcgaagaagaatat 2183
Score = 65.9 bits (33), Expect(4) = 0.0
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 84 ttgtatatctcacccaaaaggtggctggattggtccccata 124
|||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 1525 ttgtatatctcaaccaaaaggtggctggattggttcccata 1565
Score = 42.1 bits (21), Expect(4) = 0.0
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 127 aacgtcactggcaattccacccaga 151
|||||||||||||||| ||||||||
Sbjct: 1570 aacgtcactggcaattacacccaga 1594
Score = 30.2 bits (15), Expect(4) = 0.0
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 56 caaatttactgcccaaagg 74
|||||| ||||||||||||
Sbjct: 1500 caaattaactgcccaaagg 1518
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Hits to DB: 17,856,693
Number of Sequences: 32244805
Number of extensions: 17856693
Number of successful extensions: 1724648
Number of sequences better than 10.0: 310
length of query: 873
length of database: U,562,868,657
effective HSP length: 22
effective length of query: 851
effective length of database: T,853,482,947
effective search space: 31362313987897
effective search space used: 31362313987897
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
Dictyostelium discoideum cDNA Project Home